Wall clock time and date at job start Tue Mar 31 2020 18:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 119.99984 * 2 1 4 4 H 1.07996 * 120.00328 * 198.76955 * 3 2 1 5 5 C 1.38813 * 119.99939 * 18.76791 * 3 2 1 6 6 N 1.31625 * 120.00050 * 16.24073 * 5 3 2 7 7 Si 1.86801 * 120.00117 * 196.23380 * 5 3 2 8 8 H 1.48506 * 109.46946 * 94.98382 * 7 5 3 9 9 H 1.48501 * 109.47124 * 214.98371 * 7 5 3 10 10 H 1.48497 * 109.47162 * 334.98711 * 7 5 3 11 11 C 1.46493 * 120.00168 * 179.97438 * 2 1 3 12 12 C 1.52994 * 109.47535 * 270.00161 * 11 2 1 13 13 O 1.42902 * 109.47192 * 65.00022 * 12 11 2 14 14 C 1.42901 * 114.00450 * 180.02562 * 13 12 11 15 15 C 1.53001 * 109.47416 * 180.02562 * 14 13 12 16 16 N 1.46495 * 109.47417 * 64.99160 * 15 14 13 17 17 C 1.34773 * 120.00212 * 179.97438 * 16 15 14 18 18 O 1.21356 * 119.99762 * 0.02562 * 17 16 15 19 19 C 1.49354 * 119.99928 * 180.02562 * 17 16 15 20 20 O 1.21370 * 120.00227 * 359.97438 * 19 17 16 21 21 N 1.34781 * 119.99808 * 180.02562 * 19 17 16 22 22 C 1.39722 * 120.00146 * 185.09643 * 21 19 17 23 23 C 1.38929 * 120.07996 * 144.48283 * 22 21 19 24 24 C 1.38091 * 119.92453 * 179.97438 * 23 22 21 25 25 C 1.38294 * 120.07730 * 0.02562 * 24 23 22 26 26 C 1.38297 * 120.15287 * 359.97438 * 25 24 23 27 27 C 1.38088 * 120.07271 * 0.02562 * 26 25 24 28 28 H 1.09002 * 109.46974 * 274.32780 * 1 2 3 29 29 H 1.08999 * 109.47158 * 34.33191 * 1 2 3 30 30 H 1.09005 * 109.46950 * 154.32802 * 1 2 3 31 31 H 0.96998 * 120.00099 * 179.97438 * 6 5 3 32 32 H 1.09003 * 109.47494 * 150.00034 * 11 2 1 33 33 H 1.09002 * 109.47130 * 30.00433 * 11 2 1 34 34 H 1.09005 * 109.47451 * 304.99911 * 12 11 2 35 35 H 1.09004 * 109.47819 * 184.99952 * 12 11 2 36 36 H 1.08998 * 109.47696 * 59.99292 * 14 13 12 37 37 H 1.09007 * 109.46723 * 299.99382 * 14 13 12 38 38 H 1.08998 * 109.46847 * 304.99636 * 15 14 13 39 39 H 1.08993 * 109.47222 * 184.99692 * 15 14 13 40 40 H 0.97005 * 119.99776 * 0.02562 * 16 15 14 41 41 H 0.96999 * 119.99837 * 5.08786 * 21 19 17 42 42 H 1.08001 * 120.03463 * 359.70654 * 23 22 21 43 43 H 1.08000 * 119.96197 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.92710 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.96341 * 180.02562 * 26 25 24 46 46 H 1.08008 * 120.03680 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1866 1.2108 -0.3009 5 6 1.5110 2.3561 0.3868 6 7 0.3744 2.2978 1.0481 7 14 2.2645 4.0135 -0.0310 8 1 1.6694 4.5240 -1.2922 9 1 1.9915 4.9729 1.0691 10 1 3.7317 3.8612 -0.2023 11 6 2.1975 -1.2686 0.0006 12 6 2.4526 -1.7098 1.4432 13 8 1.2061 -1.9927 2.0822 14 6 1.3324 -2.4151 3.4415 15 6 -0.0566 -2.6892 4.0216 16 7 -0.6646 -3.8216 3.3187 17 6 -1.8967 -4.2457 3.6631 18 8 -2.5026 -3.6891 4.5552 19 6 -2.5163 -5.4005 2.9468 20 8 -1.9105 -5.9569 2.0542 21 7 -3.7486 -5.8243 3.2908 22 6 -4.2853 -6.9688 2.6957 23 6 -5.0923 -7.8248 3.4348 24 6 -5.6215 -8.9548 2.8433 25 6 -5.3486 -9.2351 1.5168 26 6 -4.5458 -8.3853 0.7781 27 6 -4.0133 -7.2535 1.3633 28 1 -0.3633 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9263 -0.4452 31 1 -0.0717 3.1155 1.3187 32 1 3.1500 -1.1386 -0.5133 33 1 1.6085 -2.0285 -0.5130 34 1 2.9643 -0.9122 1.9820 35 1 3.0733 -2.6058 1.4449 36 1 1.8207 -1.6320 4.0215 37 1 1.9300 -3.3257 3.4849 38 1 -0.6830 -1.8059 3.8974 39 1 0.0326 -2.9252 5.0819 40 1 -0.1801 -4.2667 2.6058 41 1 -4.2628 -5.3347 3.9517 42 1 -5.3019 -7.6089 4.4721 43 1 -6.2485 -9.6208 3.4174 44 1 -5.7635 -10.1198 1.0567 45 1 -4.3351 -8.6069 -0.2577 46 1 -3.3860 -6.5904 0.7860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717712027.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:13 Heat of formation + Delta-G solvation = -76.060850 kcal Electronic energy + Delta-G solvation = -28076.558635 eV Core-core repulsion = 23966.806655 eV Total energy + Delta-G solvation = -4109.751980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17960 -40.51950 -39.27616 -38.99039 -37.29623 -36.41504 -35.52405 -33.41954 -31.86748 -31.25235 -30.71097 -29.50238 -27.83350 -26.34425 -24.83599 -23.98711 -23.52616 -22.71780 -22.15317 -21.45707 -19.95479 -18.78548 -18.62220 -17.91196 -17.67460 -17.31004 -17.03628 -16.87788 -16.81344 -16.15570 -15.85355 -15.61576 -15.28588 -15.20775 -15.07861 -14.92822 -14.71331 -14.31763 -14.08724 -13.86674 -13.73443 -13.18500 -13.14739 -13.01564 -12.73105 -12.55048 -12.51783 -12.41969 -12.33719 -12.22775 -12.00111 -11.77889 -11.70051 -11.48066 -10.82093 -10.60407 -10.40663 -10.37026 -9.88714 -9.26050 -8.78233 -7.78688 -5.22303 -0.09640 0.44925 0.53952 1.16111 1.46486 1.48581 1.57052 1.97592 2.46565 2.53200 2.83978 2.86361 3.26229 3.33977 3.75363 3.90178 3.98080 4.05191 4.15434 4.30594 4.42431 4.46980 4.50891 4.52551 4.56512 4.57662 4.59907 4.67950 4.81946 4.92059 4.98435 5.07985 5.10027 5.20201 5.23532 5.27692 5.37352 5.50217 5.60541 5.66059 5.79855 5.80697 6.04507 6.19795 6.33780 6.44591 6.58065 6.77633 7.17923 7.92168 8.37137 9.25247 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018684 B = 0.002076 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.280929 B =13483.221024 C =13786.665295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.194 3.806 2 N -0.613 5.613 3 C -0.258 4.258 4 H 0.077 0.923 5 C -0.060 4.060 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.291 1.291 9 H -0.299 1.299 10 H -0.265 1.265 11 C 0.143 3.857 12 C 0.052 3.948 13 O -0.396 6.396 14 C 0.049 3.951 15 C 0.127 3.873 16 N -0.679 5.679 17 C 0.509 3.491 18 O -0.542 6.542 19 C 0.512 3.488 20 O -0.518 6.518 21 N -0.635 5.635 22 C 0.115 3.885 23 C -0.139 4.139 24 C -0.102 4.102 25 C -0.130 4.130 26 C -0.111 4.111 27 C -0.143 4.143 28 H 0.001 0.999 29 H 0.010 0.990 30 H 0.017 0.983 31 H 0.244 0.756 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.026 0.974 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.420 0.580 41 H 0.430 0.570 42 H 0.148 0.852 43 H 0.157 0.843 44 H 0.151 0.849 45 H 0.139 0.861 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 -24.808 6.338 26.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.336 5.336 3 C -0.388 4.388 4 H 0.094 0.906 5 C -0.255 4.255 6 N -0.584 5.584 7 Si 0.795 3.205 8 H -0.218 1.218 9 H -0.226 1.226 10 H -0.189 1.189 11 C 0.017 3.983 12 C -0.027 4.027 13 O -0.316 6.316 14 C -0.028 4.028 15 C 0.004 3.996 16 N -0.331 5.331 17 C 0.289 3.711 18 O -0.420 6.420 19 C 0.294 3.706 20 O -0.393 6.393 21 N -0.282 5.282 22 C 0.022 3.978 23 C -0.159 4.159 24 C -0.120 4.120 25 C -0.148 4.148 26 C -0.130 4.130 27 C -0.163 4.163 28 H 0.019 0.981 29 H 0.029 0.971 30 H 0.035 0.965 31 H 0.053 0.947 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.127 0.873 40 H 0.257 0.743 41 H 0.270 0.730 42 H 0.166 0.834 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.251 -24.605 6.314 26.708 hybrid contribution 0.489 1.584 0.059 1.658 sum -7.762 -23.021 6.373 25.116 Atomic orbital electron populations 1.20329 0.82962 0.94682 0.97118 1.44146 1.02056 1.01674 1.85732 1.19607 0.96469 0.85861 1.36858 0.90559 1.25726 0.98686 1.01556 0.99482 1.70313 1.20035 1.26535 1.41552 0.85250 0.78482 0.80036 0.76694 1.21787 1.22560 1.18917 1.21144 0.96814 0.87020 0.93298 1.23255 0.85289 0.98059 0.96100 1.87969 1.31034 1.87792 1.24803 1.22768 0.95745 1.00059 0.84184 1.21563 0.93252 0.87901 0.96890 1.45710 1.16191 1.32986 1.38231 1.19908 0.82850 0.84434 0.83913 1.90768 1.62229 1.57664 1.31373 1.20212 0.82397 0.84398 0.83615 1.90770 1.62656 1.56491 1.29364 1.43054 1.15592 1.26685 1.42917 1.18010 0.98806 0.88506 0.92518 1.21244 0.99608 0.94487 1.00582 1.21375 0.99029 0.96265 0.95359 1.21572 0.98172 1.00331 0.94767 1.21332 0.96852 0.93762 1.01048 1.21361 1.01518 0.99769 0.93624 0.98115 0.97134 0.96462 0.94656 0.90791 0.92396 0.95589 0.91271 0.91695 0.90211 0.92356 0.87339 0.74293 0.73026 0.83435 0.82503 0.83176 0.84268 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.29 8.62 127.77 1.10 11.39 16 2 N -0.61 -31.33 2.89 -726.95 -2.10 -33.43 16 3 C -0.26 -14.21 9.68 84.03 0.81 -13.40 16 4 H 0.08 4.00 7.86 -2.91 -0.02 3.98 16 5 C -0.06 -3.42 5.04 84.86 0.43 -2.99 16 6 N -0.94 -57.20 10.65 21.65 0.23 -56.97 16 7 Si 0.97 45.81 29.58 68.60 2.03 47.83 16 8 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 9 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 10 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 11 C 0.14 5.66 6.11 86.38 0.53 6.19 16 12 C 0.05 1.81 6.28 71.98 0.45 2.26 16 13 O -0.40 -14.28 9.85 -148.98 -1.47 -15.74 16 14 C 0.05 1.31 6.07 71.98 0.44 1.75 16 15 C 0.13 3.33 6.06 86.38 0.52 3.85 16 16 N -0.68 -17.63 5.50 -464.54 -2.55 -20.18 16 17 C 0.51 13.82 7.89 87.24 0.69 14.51 16 18 O -0.54 -16.55 16.48 -3.27 -0.05 -16.61 16 19 C 0.51 13.08 7.73 87.24 0.67 13.75 16 20 O -0.52 -15.06 13.92 -3.31 -0.05 -15.11 16 21 N -0.64 -13.31 5.32 -304.83 -1.62 -14.93 16 22 C 0.11 2.33 6.29 38.22 0.24 2.57 16 23 C -0.14 -2.03 9.97 22.40 0.22 -1.81 16 24 C -0.10 -1.18 10.04 22.25 0.22 -0.96 16 25 C -0.13 -1.63 10.04 22.30 0.22 -1.41 16 26 C -0.11 -1.87 10.04 22.25 0.22 -1.65 16 27 C -0.14 -3.16 8.70 22.40 0.19 -2.96 16 28 H 0.00 0.03 7.48 -2.39 -0.02 0.01 16 29 H 0.01 0.58 7.08 -2.39 -0.02 0.56 16 30 H 0.02 0.80 7.84 -2.38 -0.02 0.78 16 31 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.07 2.68 8.03 -2.39 -0.02 2.66 16 33 H 0.06 2.13 7.86 -2.39 -0.02 2.11 16 34 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 35 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.42 10.40 7.94 -92.70 -0.74 9.66 16 41 H 0.43 7.45 8.30 -92.71 -0.77 6.68 16 42 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 43 H 0.16 0.86 8.06 -2.91 -0.02 0.83 16 44 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 45 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 46 H 0.12 3.09 6.24 -2.91 -0.02 3.07 16 Total: -1.00 -73.84 392.12 0.89 -72.94 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: -0.50 Total: 21.11 kcal Atomic # 6 Polarization: 24.12 SS G_CDS: 6.98 Total: 31.09 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -6.05 Total: -125.52 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -1.57 Total: -47.46 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -73.84 0.89 -72.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717712027.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.118 kcal (2) G-P(sol) polarization free energy of solvation -73.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds