Wall clock time and date at job start Tue Mar 31 2020 18:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34782 * 119.99818 * 2 1 4 4 O 1.21270 * 119.99823 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99796 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.46844 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.47348 * 180.02562 * 6 5 3 8 8 C 1.41382 * 126.57787 * 89.99701 * 7 6 5 9 9 C 1.34511 * 106.84340 * 179.97438 * 8 7 6 10 10 O 1.34310 * 108.41890 * 0.02562 * 9 8 7 11 11 C 1.34307 * 109.47306 * 359.77011 * 10 9 8 12 12 C 1.46494 * 120.00109 * 179.97438 * 2 1 3 13 13 C 1.53937 * 113.73257 * 60.00370 * 12 2 1 14 14 N 1.47955 * 86.18157 * 269.35781 * 13 12 2 15 15 C 1.46896 * 111.00525 * 222.41550 * 14 13 12 16 16 C 1.50703 * 109.47363 * 169.99959 * 15 14 13 17 17 O 1.21288 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99567 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00700 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46869 * 60.00005 * 23 21 19 25 25 H 1.48497 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46951 * 300.00438 * 23 21 19 27 27 C 1.47961 * 90.76430 * 335.31007 * 14 13 12 28 28 H 1.09008 * 109.46984 * 270.00101 * 1 2 3 29 29 H 1.08993 * 109.47005 * 30.00062 * 1 2 3 30 30 H 1.08998 * 109.46819 * 150.00845 * 1 2 3 31 31 H 1.09000 * 109.47588 * 300.00533 * 5 3 2 32 32 H 1.09007 * 109.47031 * 60.00877 * 5 3 2 33 33 H 1.08993 * 109.47534 * 300.00181 * 6 5 3 34 34 H 1.09001 * 109.47126 * 60.00425 * 6 5 3 35 35 H 1.08002 * 126.58112 * 0.02562 * 8 7 6 36 36 H 1.07998 * 125.79233 * 179.97438 * 9 8 7 37 37 H 1.07999 * 125.78618 * 180.23873 * 11 10 9 38 38 H 1.09001 * 113.00985 * 191.63157 * 12 2 1 39 39 H 1.09005 * 113.75745 * 23.67504 * 13 12 2 40 40 H 1.08996 * 113.76539 * 155.04190 * 13 12 2 41 41 H 1.08998 * 109.47190 * 290.00447 * 15 14 13 42 42 H 1.09002 * 109.47036 * 50.00132 * 15 14 13 43 43 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 44 44 H 0.96992 * 120.00526 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.75838 * 270.37219 * 27 14 13 46 46 H 1.09002 * 113.76303 * 139.00391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9404 -0.0011 8 6 1.2051 5.6702 1.1343 9 6 0.5725 6.7669 0.6802 10 8 0.5873 6.7399 -0.6626 11 6 1.2290 5.6368 -1.0811 12 6 2.1975 -1.2687 0.0006 13 6 1.8972 -2.1580 -1.2195 14 7 0.8197 -2.7514 -0.3973 15 6 0.7814 -4.2115 -0.5539 16 6 -0.1519 -4.8024 0.4712 17 8 -0.7281 -4.0785 1.2555 18 7 -0.3464 -6.1353 0.5166 19 6 -1.1951 -6.6729 1.4495 20 1 -1.7081 -6.0282 2.1478 21 6 -1.3959 -8.0470 1.4959 22 7 -0.7720 -8.8314 0.6459 23 14 -2.5528 -8.7795 2.7666 24 1 -3.9163 -8.2239 2.5730 25 1 -2.5919 -10.2554 2.6078 26 1 -2.0693 -8.4412 4.1293 27 6 1.5293 -2.3697 0.8437 28 1 -0.3633 0.0000 1.0278 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 0.7589 2.5299 -0.8907 32 1 0.7584 2.5303 0.8893 33 1 3.0062 3.5779 0.8888 34 1 3.0061 3.5771 -0.8911 35 1 1.3622 5.3995 2.1680 36 1 0.1273 7.5379 1.2915 37 1 1.3962 5.3557 -2.1104 38 1 3.2616 -1.1462 0.2028 39 1 1.5345 -1.6060 -2.0866 40 1 2.6988 -2.8554 -1.4626 41 1 0.4271 -4.4605 -1.5541 42 1 1.7824 -4.6186 -0.4112 43 1 0.1147 -6.7143 -0.1104 44 1 -0.9119 -9.7906 0.6785 45 1 2.2233 -3.1290 1.2040 46 1 0.8727 -1.9868 1.6250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723749425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:49 Heat of formation + Delta-G solvation = -10.922004 kcal Electronic energy + Delta-G solvation = -27951.568372 eV Core-core repulsion = 23844.641024 eV Total energy + Delta-G solvation = -4106.927348 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.84508 -40.75119 -39.15107 -37.70129 -35.11212 -34.82816 -33.89661 -31.79817 -31.29190 -30.10629 -29.25921 -26.99355 -26.08661 -25.68587 -24.81311 -23.24422 -21.90267 -20.80808 -20.13117 -19.29569 -18.58147 -17.99173 -17.83335 -17.00816 -16.40013 -16.22150 -16.09351 -15.83973 -15.30870 -14.98063 -14.88236 -14.60868 -14.25326 -13.93973 -13.72227 -13.32872 -13.14446 -13.07387 -12.87305 -12.74252 -12.47135 -12.33224 -12.24639 -12.01146 -11.93370 -11.57382 -11.50815 -11.18615 -11.08836 -10.91608 -10.77552 -10.46453 -10.23563 -10.06746 -9.78189 -9.52066 -8.84807 -8.72742 -8.60863 -8.26084 -7.99076 -6.44061 -3.85157 1.45643 2.25715 2.52457 2.83255 2.93204 3.17890 3.23959 3.28056 3.86261 3.97284 4.18845 4.32836 4.47944 4.55441 4.63880 4.81553 4.83201 4.91766 4.96508 5.00546 5.18600 5.20200 5.36452 5.39217 5.43373 5.46550 5.49489 5.62819 5.68237 5.70395 5.75549 5.77637 5.83680 5.87439 5.94968 6.11613 6.13097 6.21055 6.22464 6.53565 6.59200 6.80645 7.11134 7.38161 7.52332 8.02662 8.09184 8.58391 9.15109 9.51346 10.02713 10.73503 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001800 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.922416 B =15551.548694 C =16205.845484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.589 5.589 3 C 0.513 3.487 4 O -0.548 6.548 5 C -0.131 4.131 6 C -0.035 4.035 7 C -0.177 4.177 8 C -0.208 4.208 9 C -0.044 4.044 10 O -0.179 6.179 11 C -0.041 4.041 12 C 0.110 3.890 13 C -0.012 4.012 14 N -0.452 5.452 15 C 0.009 3.991 16 C 0.443 3.557 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.014 3.986 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.201 0.799 37 H 0.201 0.799 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.077 0.923 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 24.418 -4.592 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.320 5.320 3 C 0.302 3.698 4 O -0.426 6.426 5 C -0.171 4.171 6 C -0.072 4.072 7 C -0.178 4.178 8 C -0.227 4.227 9 C -0.111 4.111 10 O -0.075 6.075 11 C -0.109 4.109 12 C 0.005 3.995 13 C -0.143 4.143 14 N -0.175 5.175 15 C -0.123 4.123 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.166 0.834 36 H 0.218 0.782 37 H 0.218 0.782 38 H 0.125 0.875 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.920 25.072 -4.371 25.921 hybrid contribution 0.386 -1.575 0.464 1.687 sum 5.306 23.497 -3.907 24.404 Atomic orbital electron populations 1.22021 0.78200 1.04346 1.02646 1.47504 1.07570 1.04627 1.72315 1.20736 0.87972 0.85401 0.75671 1.90677 1.14062 1.87534 1.50333 1.21668 0.99271 0.91479 1.04688 1.19700 0.95664 0.87611 1.04268 1.20504 1.05111 0.99450 0.92776 1.21802 1.04360 0.96479 1.00107 1.24033 1.04778 1.01442 0.80868 1.84074 1.60608 1.40034 1.22777 1.23913 1.00119 0.86962 0.99866 1.22473 0.97183 0.83384 0.96463 1.24475 0.94542 0.97356 0.97892 1.68393 1.35768 1.09540 1.03753 1.22470 0.99162 0.89992 1.00694 1.19674 0.86763 0.83104 0.87588 1.90511 1.52409 1.59760 1.43771 1.41871 1.40995 1.05147 1.32022 1.19638 1.20930 0.90884 1.11477 0.87999 1.25260 0.98341 0.96079 0.98227 1.69599 1.42872 1.05156 1.36649 0.85921 0.80332 0.77515 0.80470 1.19888 1.20966 1.19933 1.24168 0.96515 0.95623 0.95252 0.92496 0.91834 0.87710 0.88818 0.88693 0.90170 0.90332 0.83446 0.78222 0.78215 0.87500 0.89236 0.90419 0.89158 0.92674 0.77500 0.91805 0.90507 0.88387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.77 9.19 59.85 0.55 1.32 16 2 N -0.59 -7.11 3.09 -175.28 -0.54 -7.65 16 3 C 0.51 6.19 7.67 -10.98 -0.08 6.11 16 4 O -0.55 -8.33 15.47 5.57 0.09 -8.24 16 5 C -0.13 -1.14 4.23 -27.89 -0.12 -1.26 16 6 C -0.03 -0.30 5.02 -27.88 -0.14 -0.44 16 7 C -0.18 -1.49 5.42 -104.74 -0.57 -2.05 16 8 C -0.21 -1.64 10.87 -39.70 -0.43 -2.07 16 9 C -0.04 -0.31 12.09 29.41 0.36 0.05 16 10 O -0.18 -1.52 10.65 5.68 0.06 -1.46 16 11 C -0.04 -0.31 12.01 29.41 0.35 0.04 16 12 C 0.11 1.42 4.51 -69.63 -0.31 1.11 16 13 C -0.01 -0.15 7.45 -2.77 -0.02 -0.17 16 14 N -0.45 -6.98 4.08 -239.90 -0.98 -7.96 16 15 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 16 C 0.44 10.17 7.59 -10.98 -0.08 10.09 16 17 O -0.58 -15.16 15.12 5.55 0.08 -15.08 16 18 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.01 0.21 5.99 -2.77 -0.02 0.19 16 28 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.06 0.53 6.44 -51.93 -0.33 0.19 16 30 H 0.10 1.37 6.07 -51.93 -0.32 1.05 16 31 H 0.09 0.68 7.40 -51.93 -0.38 0.29 16 32 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 33 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 34 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.15 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.20 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.20 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.11 1.42 7.25 -51.93 -0.38 1.04 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 0.85 7.79 -51.93 -0.40 0.45 16 41 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 43 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.08 1.15 7.78 -51.93 -0.40 0.75 16 46 H 0.10 1.65 7.77 -51.93 -0.40 1.25 16 LS Contribution 384.62 15.07 5.80 5.80 Total: -1.00 -33.35 384.62 -7.29 -40.64 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -6.65 Total: 10.65 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.78 Total: 5.14 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.85 Total: -53.31 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.23 Total: -24.78 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.35 -7.29 -40.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723749425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.719 kcal (2) G-P(sol) polarization free energy of solvation -33.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds