Wall clock time and date at job start Tue Mar 31 2020 18:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34782 * 119.99818 * 2 1 4 4 O 1.21270 * 119.99823 * 180.02562 * 3 2 1 5 5 C 1.50700 * 119.99796 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.46844 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.47348 * 180.02562 * 6 5 3 8 8 C 1.41382 * 126.57787 * 89.99701 * 7 6 5 9 9 C 1.34511 * 106.84340 * 179.97438 * 8 7 6 10 10 O 1.34310 * 108.41890 * 0.02562 * 9 8 7 11 11 C 1.34307 * 109.47306 * 359.77011 * 10 9 8 12 12 C 1.46494 * 120.00109 * 179.97438 * 2 1 3 13 13 C 1.53937 * 113.73257 * 60.00370 * 12 2 1 14 14 N 1.47955 * 86.18157 * 269.35781 * 13 12 2 15 15 C 1.46896 * 111.00525 * 222.41550 * 14 13 12 16 16 C 1.50703 * 109.47363 * 169.99959 * 15 14 13 17 17 O 1.21288 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99567 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00700 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46869 * 60.00005 * 23 21 19 25 25 H 1.48497 * 109.47049 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46951 * 300.00438 * 23 21 19 27 27 C 1.47961 * 90.76430 * 335.31007 * 14 13 12 28 28 H 1.09008 * 109.46984 * 270.00101 * 1 2 3 29 29 H 1.08993 * 109.47005 * 30.00062 * 1 2 3 30 30 H 1.08998 * 109.46819 * 150.00845 * 1 2 3 31 31 H 1.09000 * 109.47588 * 300.00533 * 5 3 2 32 32 H 1.09007 * 109.47031 * 60.00877 * 5 3 2 33 33 H 1.08993 * 109.47534 * 300.00181 * 6 5 3 34 34 H 1.09001 * 109.47126 * 60.00425 * 6 5 3 35 35 H 1.08002 * 126.58112 * 0.02562 * 8 7 6 36 36 H 1.07998 * 125.79233 * 179.97438 * 9 8 7 37 37 H 1.07999 * 125.78618 * 180.23873 * 11 10 9 38 38 H 1.09001 * 113.00985 * 191.63157 * 12 2 1 39 39 H 1.09005 * 113.75745 * 23.67504 * 13 12 2 40 40 H 1.08996 * 113.76539 * 155.04190 * 13 12 2 41 41 H 1.08998 * 109.47190 * 290.00447 * 15 14 13 42 42 H 1.09002 * 109.47036 * 50.00132 * 15 14 13 43 43 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 44 44 H 0.96992 * 120.00526 * 179.97438 * 22 21 19 45 45 H 1.09002 * 113.75838 * 270.37219 * 27 14 13 46 46 H 1.09002 * 113.76303 * 139.00391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9404 -0.0011 8 6 1.2051 5.6702 1.1343 9 6 0.5725 6.7669 0.6802 10 8 0.5873 6.7399 -0.6626 11 6 1.2290 5.6368 -1.0811 12 6 2.1975 -1.2687 0.0006 13 6 1.8972 -2.1580 -1.2195 14 7 0.8197 -2.7514 -0.3973 15 6 0.7814 -4.2115 -0.5539 16 6 -0.1519 -4.8024 0.4712 17 8 -0.7281 -4.0785 1.2555 18 7 -0.3464 -6.1353 0.5166 19 6 -1.1951 -6.6729 1.4495 20 1 -1.7081 -6.0282 2.1478 21 6 -1.3959 -8.0470 1.4959 22 7 -0.7720 -8.8314 0.6459 23 14 -2.5528 -8.7795 2.7666 24 1 -3.9163 -8.2239 2.5730 25 1 -2.5919 -10.2554 2.6078 26 1 -2.0693 -8.4412 4.1293 27 6 1.5293 -2.3697 0.8437 28 1 -0.3633 0.0000 1.0278 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5137 31 1 0.7589 2.5299 -0.8907 32 1 0.7584 2.5303 0.8893 33 1 3.0062 3.5779 0.8888 34 1 3.0061 3.5771 -0.8911 35 1 1.3622 5.3995 2.1680 36 1 0.1273 7.5379 1.2915 37 1 1.3962 5.3557 -2.1104 38 1 3.2616 -1.1462 0.2028 39 1 1.5345 -1.6060 -2.0866 40 1 2.6988 -2.8554 -1.4626 41 1 0.4271 -4.4605 -1.5541 42 1 1.7824 -4.6186 -0.4112 43 1 0.1147 -6.7143 -0.1104 44 1 -0.9119 -9.7906 0.6785 45 1 2.2233 -3.1290 1.2040 46 1 0.8727 -1.9868 1.6250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723749425.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:49 Heat of formation + Delta-G solvation = -34.026851 kcal Electronic energy + Delta-G solvation = -27952.570273 eV Core-core repulsion = 23844.641024 eV Total energy + Delta-G solvation = -4107.929249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.40465 -41.85711 -40.38596 -39.36104 -36.06596 -35.79965 -35.70365 -33.29425 -32.48233 -31.28229 -29.96245 -28.06930 -27.35234 -26.95544 -26.00481 -24.54745 -22.44052 -21.64477 -21.07333 -20.85838 -19.91927 -19.56666 -18.60584 -17.92659 -17.80463 -17.26604 -16.96393 -16.77358 -16.63350 -16.34727 -16.27730 -15.58711 -15.41653 -15.23940 -15.04386 -14.77766 -14.18912 -14.00805 -13.70846 -13.63241 -13.48339 -13.46709 -13.25071 -13.12741 -13.03272 -12.97112 -12.79734 -12.68883 -12.43917 -12.15628 -12.12896 -11.92622 -11.86165 -11.48743 -10.92951 -10.51989 -10.31563 -10.01024 -9.73061 -9.61808 -9.39608 -8.46379 -5.94944 0.91560 1.39238 1.41227 1.51875 1.57821 1.65554 1.99984 2.06105 2.28422 2.36927 2.79155 3.20290 3.26903 3.47017 3.60484 3.78893 3.93581 4.03484 4.17602 4.21598 4.22421 4.27237 4.38310 4.41164 4.45789 4.47989 4.55389 4.62165 4.69080 4.73049 4.79585 4.85964 4.88719 4.91438 5.14130 5.18154 5.25687 5.31864 5.37985 5.40905 5.57047 5.63891 5.84417 6.04921 6.25526 6.43259 6.60346 7.12950 7.13819 7.56824 8.12221 8.70696 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001800 C = 0.001727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.922416 B =15551.548694 C =16205.845484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.590 5.590 3 C 0.512 3.488 4 O -0.582 6.582 5 C -0.122 4.122 6 C -0.027 4.027 7 C -0.193 4.193 8 C -0.229 4.229 9 C -0.042 4.042 10 O -0.192 6.192 11 C -0.043 4.043 12 C 0.117 3.883 13 C 0.001 3.999 14 N -0.466 5.466 15 C 0.021 3.979 16 C 0.442 3.558 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.011 3.989 28 H 0.048 0.952 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.154 0.846 36 H 0.231 0.769 37 H 0.225 0.775 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.075 0.925 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.306 25.286 -5.590 26.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.321 5.321 3 C 0.303 3.697 4 O -0.463 6.463 5 C -0.161 4.161 6 C -0.065 4.065 7 C -0.194 4.194 8 C -0.248 4.248 9 C -0.109 4.109 10 O -0.088 6.088 11 C -0.110 4.110 12 C 0.011 3.989 13 C -0.128 4.128 14 N -0.189 5.189 15 C -0.111 4.111 16 C 0.229 3.771 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.119 4.119 28 H 0.067 0.933 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.171 0.829 36 H 0.248 0.752 37 H 0.241 0.759 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.093 0.907 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.711 25.944 -5.389 26.913 hybrid contribution 0.473 -1.770 0.789 1.995 sum 5.185 24.174 -4.600 25.148 Atomic orbital electron populations 1.22010 0.77440 1.04950 1.02336 1.47606 1.08003 1.04461 1.72035 1.21296 0.87685 0.86184 0.74571 1.90662 1.15669 1.88010 1.51939 1.21668 0.99068 0.89319 1.06081 1.19564 0.95496 0.88081 1.03334 1.20541 1.05866 0.99535 0.93487 1.22035 1.05145 0.97140 1.00497 1.24643 1.03983 1.01743 0.80549 1.84087 1.60804 1.40358 1.23525 1.24389 0.99367 0.86439 1.00824 1.22351 0.96878 0.83466 0.96172 1.24508 0.93865 0.96942 0.97491 1.68421 1.37572 1.08330 1.04553 1.22379 0.98549 0.90890 0.99263 1.20717 0.86362 0.82265 0.87726 1.90486 1.53829 1.60442 1.45434 1.41947 1.41230 1.06057 1.32024 1.19602 1.22527 0.91444 1.12591 0.90331 1.26018 0.99481 0.95915 0.99890 1.69660 1.43474 1.05513 1.37483 0.85010 0.78244 0.77210 0.78005 1.19711 1.19571 1.19793 1.24099 0.96189 0.96658 0.94924 0.93303 0.88679 0.89558 0.86615 0.87799 0.91762 0.90669 0.82851 0.75249 0.75866 0.87716 0.87984 0.88405 0.87196 0.90432 0.77075 0.91354 0.90658 0.90911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.55 9.19 127.77 1.17 2.73 16 2 N -0.59 -13.63 3.09 -826.84 -2.56 -16.18 16 3 C 0.51 11.82 7.67 87.66 0.67 12.49 16 4 O -0.58 -17.46 15.47 -3.00 -0.05 -17.50 16 5 C -0.12 -1.92 4.23 29.85 0.13 -1.79 16 6 C -0.03 -0.45 5.02 29.85 0.15 -0.30 16 7 C -0.19 -3.01 5.42 -19.94 -0.11 -3.11 16 8 C -0.23 -3.36 10.87 22.19 0.24 -3.12 16 9 C -0.04 -0.52 12.09 66.97 0.81 0.29 16 10 O -0.19 -2.92 10.65 -2.59 -0.03 -2.95 16 11 C -0.04 -0.58 12.01 66.97 0.80 0.22 16 12 C 0.12 2.91 4.51 46.56 0.21 3.12 16 13 C 0.00 0.03 7.45 86.41 0.64 0.67 16 14 N -0.47 -13.88 4.08 -912.90 -3.72 -17.60 16 15 C 0.02 0.68 5.31 85.56 0.45 1.13 16 16 C 0.44 20.44 7.59 87.66 0.67 21.10 16 17 O -0.62 -32.98 15.12 -3.05 -0.05 -33.02 16 18 N -0.58 -29.06 5.29 -306.99 -1.62 -30.68 16 19 C -0.33 -18.66 9.68 84.04 0.81 -17.85 16 20 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.36 13.05 21.66 0.28 -49.07 16 23 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 27 C 0.01 0.34 5.99 86.41 0.52 0.85 16 28 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.09 1.34 6.44 -2.39 -0.02 1.33 16 30 H 0.09 2.18 6.07 -2.39 -0.01 2.16 16 31 H 0.12 1.34 7.40 -2.39 -0.02 1.32 16 32 H 0.10 1.49 8.11 -2.38 -0.02 1.47 16 33 H 0.06 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 35 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.23 1.05 8.06 -2.91 -0.02 1.03 16 37 H 0.23 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.10 2.70 7.25 -2.39 -0.02 2.68 16 39 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 40 H 0.10 1.83 7.79 -2.39 -0.02 1.81 16 41 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.08 2.22 7.69 -2.39 -0.02 2.20 16 43 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 44 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 45 H 0.08 2.26 7.78 -2.39 -0.02 2.24 16 46 H 0.07 2.55 7.77 -2.39 -0.02 2.53 16 Total: -1.00 -73.11 384.62 2.20 -70.90 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.27 Total: 35.20 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 7.64 Total: 16.20 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -7.62 Total: -113.54 kcal Atomic # 8 Polarization: -53.36 SS G_CDS: -0.12 Total: -53.48 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -73.11 2.20 -70.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723749425.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.875 kcal (2) G-P(sol) polarization free energy of solvation -73.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds