Wall clock time and date at job start Tue Mar 31 2020 18:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 113.99657 * 2 1 4 4 C 1.53003 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46618 * 65.00379 * 4 3 2 6 6 C 1.35924 * 116.99479 * 180.02562 * 5 4 3 7 7 C 1.38850 * 120.41047 * 359.97438 * 6 5 4 8 8 N 1.31874 * 121.00517 * 180.02562 * 7 6 5 9 9 C 1.31684 * 121.93900 * 359.66998 * 8 7 6 10 10 C 1.39526 * 120.68970 * 0.59523 * 9 8 7 11 11 C 1.47859 * 120.53229 * 179.72593 * 10 9 8 12 12 O 1.21549 * 119.99849 * 40.19125 * 11 10 9 13 13 N 1.34773 * 119.99858 * 220.19382 * 11 10 9 14 14 C 1.46505 * 119.99998 * 355.64145 * 13 11 10 15 15 C 1.46498 * 119.99978 * 175.64429 * 13 11 10 16 16 C 1.53498 * 114.20773 * 120.00082 * 15 13 11 17 17 N 1.47062 * 87.99043 * 87.71255 * 16 15 13 18 18 C 1.36929 * 136.06001 * 207.08123 * 17 16 15 19 19 H 1.07996 * 120.00361 * 5.71076 * 18 17 16 20 20 C 1.38818 * 119.99985 * 185.70980 * 18 17 16 21 21 N 1.31623 * 119.99910 * 5.54006 * 20 18 17 22 22 Si 1.86796 * 120.00041 * 185.54489 * 20 18 17 23 23 H 1.48495 * 109.47084 * 265.00260 * 22 20 18 24 24 H 1.48497 * 109.47197 * 25.00297 * 22 20 18 25 25 H 1.48507 * 109.47247 * 145.00169 * 22 20 18 26 26 C 1.47076 * 87.87933 * 27.34408 * 17 16 15 27 27 C 1.38842 * 120.40470 * 179.97438 * 6 5 4 28 28 H 1.08994 * 109.47235 * 59.99926 * 1 2 3 29 29 H 1.09009 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46835 * 299.99422 * 1 2 3 31 31 H 1.09009 * 109.47313 * 60.00504 * 3 2 1 32 32 H 1.08996 * 109.47770 * 300.00498 * 3 2 1 33 33 H 1.09000 * 109.47208 * 305.00690 * 4 3 2 34 34 H 1.08998 * 109.47504 * 184.99960 * 4 3 2 35 35 H 1.08005 * 119.49477 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.65643 * 180.31441 * 9 8 7 37 37 H 1.09007 * 109.46780 * 274.67286 * 14 13 11 38 38 H 1.09000 * 109.47097 * 34.67603 * 14 13 11 39 39 H 1.08998 * 109.46871 * 154.67764 * 14 13 11 40 40 H 1.08998 * 113.28497 * 346.92858 * 15 13 11 41 41 H 1.09008 * 113.46405 * 332.92957 * 16 15 13 42 42 H 1.09004 * 113.47075 * 202.49989 * 16 15 13 43 43 H 0.96995 * 120.00085 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.46672 * 87.43792 * 26 17 16 45 45 H 1.09008 * 113.46343 * 217.87347 * 26 17 16 46 46 H 1.08005 * 120.87858 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2221 6 6 5.3021 0.3981 -1.3839 7 6 6.1900 0.7918 -0.3917 8 7 7.4896 0.6215 -0.5365 9 6 8.0039 0.0693 -1.6157 10 6 7.1815 -0.3492 -2.6623 11 6 7.7631 -0.9634 -3.8751 12 8 8.6872 -1.7468 -3.7761 13 7 7.2686 -0.6546 -5.0902 14 6 6.0946 0.2145 -5.2040 15 6 7.9049 -1.1879 -6.2971 16 6 6.9824 -2.0562 -7.1638 17 7 6.5502 -0.8263 -7.8445 18 6 5.4252 -0.4071 -8.5031 19 1 4.5473 -1.0357 -8.5265 20 6 5.4131 0.8259 -9.1408 21 7 6.5144 1.5438 -9.2063 22 14 3.8339 1.4663 -9.9058 23 1 3.8059 1.1172 -11.3488 24 1 2.6679 0.8487 -9.2244 25 1 3.7723 2.9421 -9.7521 26 6 7.8606 -0.2470 -7.5124 27 6 5.7970 -0.1837 -2.5433 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1766 0.0889 35 1 5.8104 1.2445 0.5125 36 1 9.0736 -0.0569 -1.6934 37 1 5.1888 -0.3843 -5.1086 38 1 6.1196 0.9643 -4.4133 39 1 6.1021 0.7098 -6.1749 40 1 8.8851 -1.6264 -6.1096 41 1 6.1868 -2.5421 -6.5989 42 1 7.5202 -2.7462 -7.8140 43 1 6.5058 2.4054 -9.6515 44 1 8.6300 -0.4600 -8.2545 45 1 7.8132 0.8086 -7.2445 46 1 5.1311 -0.4997 -3.3327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723802479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:58 Heat of formation + Delta-G solvation = 4.846585 kcal Electronic energy + Delta-G solvation = -29082.084614 eV Core-core repulsion = 24975.841044 eV Total energy + Delta-G solvation = -4106.243570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.04240 -39.78285 -38.70673 -37.85889 -37.40245 -34.43064 -32.68235 -31.98457 -31.27350 -29.92472 -27.97865 -26.79015 -26.43614 -25.05011 -24.65224 -23.70234 -23.23907 -22.46784 -20.60710 -18.78806 -18.01418 -17.27753 -17.21605 -16.90819 -16.86980 -16.42498 -15.98384 -15.63227 -15.59087 -15.32381 -14.84065 -14.72211 -14.01550 -13.85754 -13.81608 -13.59157 -13.28003 -12.93350 -12.73678 -12.62859 -12.46843 -12.35556 -11.96379 -11.93614 -11.75609 -11.40599 -11.36592 -10.99333 -10.92212 -10.68914 -10.17205 -10.14477 -10.11457 -9.92725 -9.71390 -9.47860 -9.37209 -8.85975 -8.64251 -8.06745 -6.97130 -5.87014 -3.18572 0.64194 1.13419 2.69227 2.91758 3.27503 3.30700 3.33228 3.39144 3.40610 3.71501 4.23735 4.34724 4.38616 4.52111 4.60992 4.65622 4.79185 4.83525 4.86046 4.97830 5.00641 5.02638 5.18106 5.23369 5.31412 5.34479 5.39548 5.43528 5.69253 5.74017 5.90318 6.06189 6.09871 6.13290 6.27043 6.44495 6.50604 6.64692 6.69690 6.87940 6.98481 7.08629 7.20411 7.43040 7.71357 7.82372 7.88175 8.39297 8.94892 9.60723 10.54834 11.30858 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.003508 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.711801 B = 7979.879538 C =10270.221302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.062 3.938 4 C 0.057 3.943 5 O -0.297 6.297 6 C 0.074 3.926 7 C 0.029 3.971 8 N -0.453 5.453 9 C 0.113 3.887 10 C -0.129 4.129 11 C 0.559 3.441 12 O -0.541 6.541 13 N -0.564 5.564 14 C 0.073 3.927 15 C 0.081 3.919 16 C 0.105 3.895 17 N -0.606 5.606 18 C -0.218 4.218 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.279 1.279 25 H -0.290 1.290 26 C 0.152 3.848 27 C -0.078 4.078 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.116 0.884 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.044 0.956 43 H 0.255 0.745 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.943 1.256 19.891 21.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.015 4.015 4 C -0.018 4.018 5 O -0.210 6.210 6 C 0.027 3.973 7 C -0.129 4.129 8 N -0.161 5.161 9 C -0.046 4.046 10 C -0.134 4.134 11 C 0.346 3.654 12 O -0.419 6.419 13 N -0.294 5.294 14 C -0.070 4.070 15 C -0.024 4.024 16 C -0.022 4.022 17 N -0.333 5.333 18 C -0.345 4.345 19 H 0.099 0.901 20 C -0.202 4.202 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.205 1.205 25 H -0.216 1.216 26 C 0.026 3.974 27 C -0.104 4.104 28 H 0.063 0.937 29 H 0.106 0.894 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.176 0.824 36 H 0.184 0.816 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.134 0.866 40 H 0.120 0.880 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.217 1.154 20.255 21.219 hybrid contribution -1.682 0.466 -1.183 2.108 sum -7.898 1.619 19.072 20.706 Atomic orbital electron populations 1.22774 0.80630 1.03127 1.00032 1.87970 1.19989 1.26940 1.95430 1.22569 0.91240 0.85979 1.01685 1.22923 0.94182 0.98361 0.86337 1.86183 1.18817 1.76851 1.39126 1.19859 0.83972 0.98083 0.95390 1.23028 0.89318 1.01675 0.98852 1.67585 1.13158 1.12163 1.23220 1.22756 1.00680 0.93815 0.87346 1.20868 0.93584 1.01828 0.97168 1.18001 0.82970 0.81711 0.82748 1.90761 1.29644 1.35178 1.86359 1.47272 1.29867 1.47700 1.04523 1.22226 0.86051 0.93267 1.05406 1.22791 0.96220 0.98683 0.84694 1.22841 0.95215 0.91433 0.92757 1.45872 1.11997 1.09923 1.65517 1.18928 0.88496 1.00648 1.26470 0.90105 1.24797 0.97254 0.97951 1.00215 1.69837 1.25501 1.13504 1.47636 0.86153 0.82551 0.78165 0.79238 1.21631 1.20491 1.21603 1.22428 0.87861 0.97724 0.89425 1.21465 0.94716 0.97516 0.96746 0.93726 0.89396 0.94081 0.90929 0.91735 0.90775 0.90044 0.82413 0.81553 0.92779 0.92703 0.86603 0.88022 0.93918 0.93848 0.93529 0.93906 0.91338 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.77 10.67 -40.08 -0.43 -4.20 16 3 C 0.06 0.44 6.32 37.16 0.23 0.68 16 4 C 0.06 0.44 5.13 37.16 0.19 0.63 16 5 O -0.30 -3.48 10.11 -24.36 -0.25 -3.72 16 6 C 0.07 0.93 6.70 -39.13 -0.26 0.66 16 7 C 0.03 0.34 10.21 -17.31 -0.18 0.16 16 8 N -0.45 -6.05 10.34 -12.80 -0.13 -6.19 16 9 C 0.11 1.59 10.81 -17.13 -0.19 1.40 16 10 C -0.13 -1.95 5.19 -104.84 -0.54 -2.49 16 11 C 0.56 9.84 7.36 -12.32 -0.09 9.74 16 12 O -0.54 -10.74 16.48 5.32 0.09 -10.65 16 13 N -0.56 -10.25 3.12 -174.66 -0.54 -10.79 16 14 C 0.07 1.28 8.11 59.85 0.49 1.77 16 15 C 0.08 1.56 4.66 -67.67 -0.32 1.25 16 16 C 0.10 2.13 8.31 -8.52 -0.07 2.06 16 17 N -0.61 -14.53 2.46 -184.63 -0.46 -14.98 16 18 C -0.22 -5.71 10.20 -15.06 -0.15 -5.87 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 21 N -0.92 -25.78 11.76 55.49 0.65 -25.12 16 22 Si 0.91 21.10 29.56 -169.99 -5.02 16.08 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.15 3.40 6.27 -8.38 -0.05 3.34 16 27 C -0.08 -1.08 7.68 -38.72 -0.30 -1.38 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.08 0.43 7.67 -51.93 -0.40 0.04 16 35 H 0.16 1.28 6.30 -52.48 -0.33 0.95 16 36 H 0.17 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.05 0.92 6.90 -51.93 -0.36 0.56 16 38 H 0.05 0.86 5.93 -51.93 -0.31 0.55 16 39 H 0.12 2.49 5.13 -51.93 -0.27 2.22 16 40 H 0.10 1.89 7.32 -51.93 -0.38 1.51 16 41 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 1.66 6.74 -51.92 -0.35 1.31 16 46 H 0.16 2.18 5.54 -52.48 -0.29 1.89 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -32.21 377.80 -7.05 -39.26 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.43 Total: 1.58 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: -0.22 Total: 13.05 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.48 Total: -57.09 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.59 Total: -18.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.21 -7.05 -39.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723802479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.103 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds