Wall clock time and date at job start Tue Mar 31 2020 18:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42892 * 113.99657 * 2 1 4 4 C 1.53003 * 109.47255 * 180.02562 * 3 2 1 5 5 O 1.42906 * 109.46618 * 65.00379 * 4 3 2 6 6 C 1.35924 * 116.99479 * 180.02562 * 5 4 3 7 7 C 1.38850 * 120.41047 * 359.97438 * 6 5 4 8 8 N 1.31874 * 121.00517 * 180.02562 * 7 6 5 9 9 C 1.31684 * 121.93900 * 359.66998 * 8 7 6 10 10 C 1.39526 * 120.68970 * 0.59523 * 9 8 7 11 11 C 1.47859 * 120.53229 * 179.72593 * 10 9 8 12 12 O 1.21549 * 119.99849 * 40.19125 * 11 10 9 13 13 N 1.34773 * 119.99858 * 220.19382 * 11 10 9 14 14 C 1.46505 * 119.99998 * 355.64145 * 13 11 10 15 15 C 1.46498 * 119.99978 * 175.64429 * 13 11 10 16 16 C 1.53498 * 114.20773 * 120.00082 * 15 13 11 17 17 N 1.47062 * 87.99043 * 87.71255 * 16 15 13 18 18 C 1.36929 * 136.06001 * 207.08123 * 17 16 15 19 19 H 1.07996 * 120.00361 * 5.71076 * 18 17 16 20 20 C 1.38818 * 119.99985 * 185.70980 * 18 17 16 21 21 N 1.31623 * 119.99910 * 5.54006 * 20 18 17 22 22 Si 1.86796 * 120.00041 * 185.54489 * 20 18 17 23 23 H 1.48495 * 109.47084 * 265.00260 * 22 20 18 24 24 H 1.48497 * 109.47197 * 25.00297 * 22 20 18 25 25 H 1.48507 * 109.47247 * 145.00169 * 22 20 18 26 26 C 1.47076 * 87.87933 * 27.34408 * 17 16 15 27 27 C 1.38842 * 120.40470 * 179.97438 * 6 5 4 28 28 H 1.08994 * 109.47235 * 59.99926 * 1 2 3 29 29 H 1.09009 * 109.46782 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46835 * 299.99422 * 1 2 3 31 31 H 1.09009 * 109.47313 * 60.00504 * 3 2 1 32 32 H 1.08996 * 109.47770 * 300.00498 * 3 2 1 33 33 H 1.09000 * 109.47208 * 305.00690 * 4 3 2 34 34 H 1.08998 * 109.47504 * 184.99960 * 4 3 2 35 35 H 1.08005 * 119.49477 * 0.02562 * 7 6 5 36 36 H 1.07999 * 119.65643 * 180.31441 * 9 8 7 37 37 H 1.09007 * 109.46780 * 274.67286 * 14 13 11 38 38 H 1.09000 * 109.47097 * 34.67603 * 14 13 11 39 39 H 1.08998 * 109.46871 * 154.67764 * 14 13 11 40 40 H 1.08998 * 113.28497 * 346.92858 * 15 13 11 41 41 H 1.09008 * 113.46405 * 332.92957 * 16 15 13 42 42 H 1.09004 * 113.47075 * 202.49989 * 16 15 13 43 43 H 0.96995 * 120.00085 * 180.02562 * 21 20 18 44 44 H 1.08998 * 113.46672 * 87.43792 * 26 17 16 45 45 H 1.09008 * 113.46343 * 217.87347 * 26 17 16 46 46 H 1.08005 * 120.87858 * 0.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2221 6 6 5.3021 0.3981 -1.3839 7 6 6.1900 0.7918 -0.3917 8 7 7.4896 0.6215 -0.5365 9 6 8.0039 0.0693 -1.6157 10 6 7.1815 -0.3492 -2.6623 11 6 7.7631 -0.9634 -3.8751 12 8 8.6872 -1.7468 -3.7761 13 7 7.2686 -0.6546 -5.0902 14 6 6.0946 0.2145 -5.2040 15 6 7.9049 -1.1879 -6.2971 16 6 6.9824 -2.0562 -7.1638 17 7 6.5502 -0.8263 -7.8445 18 6 5.4252 -0.4071 -8.5031 19 1 4.5473 -1.0357 -8.5265 20 6 5.4131 0.8259 -9.1408 21 7 6.5144 1.5438 -9.2063 22 14 3.8339 1.4663 -9.9058 23 1 3.8059 1.1172 -11.3488 24 1 2.6679 0.8487 -9.2244 25 1 3.7723 2.9421 -9.7521 26 6 7.8606 -0.2470 -7.5124 27 6 5.7970 -0.1837 -2.5433 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6885 1.8464 -0.8899 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1766 0.0889 35 1 5.8104 1.2445 0.5125 36 1 9.0736 -0.0569 -1.6934 37 1 5.1888 -0.3843 -5.1086 38 1 6.1196 0.9643 -4.4133 39 1 6.1021 0.7098 -6.1749 40 1 8.8851 -1.6264 -6.1096 41 1 6.1868 -2.5421 -6.5989 42 1 7.5202 -2.7462 -7.8140 43 1 6.5058 2.4054 -9.6515 44 1 8.6300 -0.4600 -8.2545 45 1 7.8132 0.8086 -7.2445 46 1 5.1311 -0.4997 -3.3327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723802479.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:57 Heat of formation + Delta-G solvation = -16.494046 kcal Electronic energy + Delta-G solvation = -29083.010014 eV Core-core repulsion = 24975.841044 eV Total energy + Delta-G solvation = -4107.168970 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14641 -41.10344 -39.74285 -39.05650 -38.32799 -35.92182 -34.30363 -33.37772 -32.15741 -30.73794 -29.81180 -27.95786 -27.31702 -26.39842 -26.25313 -24.92691 -24.42228 -23.49979 -21.94743 -20.20303 -19.24152 -18.66078 -18.26883 -17.93485 -17.85416 -17.68902 -17.15854 -16.76193 -16.56196 -16.35122 -16.22609 -15.90654 -15.64182 -15.33209 -14.88108 -14.64533 -14.53997 -14.30008 -14.17261 -13.84513 -13.58484 -13.31499 -13.25485 -13.21240 -12.78804 -12.62043 -12.57158 -12.51774 -12.45794 -12.00916 -11.98441 -11.74821 -11.44549 -11.33839 -10.88625 -10.79714 -10.65752 -10.49753 -9.67179 -9.51606 -8.92124 -7.90339 -5.22312 -0.42260 0.11099 1.48176 1.49247 1.52349 1.58012 1.81005 2.04348 2.48091 2.64156 2.81044 3.23263 3.32980 3.43649 3.46422 3.51394 3.72929 3.77771 3.87612 4.04748 4.14513 4.20032 4.27856 4.34850 4.40475 4.47216 4.51432 4.52857 4.57114 4.61320 4.68896 4.77490 4.79616 4.87208 4.88185 4.88733 5.00352 5.18303 5.26723 5.27155 5.46369 5.62744 5.88460 6.11700 6.23241 6.36020 6.72725 6.91374 6.96331 7.60306 8.59957 9.27692 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008967 B = 0.003508 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3121.711801 B = 7979.879538 C =10270.221302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.418 6.418 3 C 0.057 3.943 4 C 0.045 3.955 5 O -0.314 6.314 6 C 0.080 3.920 7 C 0.043 3.957 8 N -0.460 5.460 9 C 0.109 3.891 10 C -0.143 4.143 11 C 0.564 3.436 12 O -0.565 6.565 13 N -0.569 5.569 14 C 0.088 3.912 15 C 0.101 3.899 16 C 0.108 3.892 17 N -0.625 5.625 18 C -0.221 4.221 19 H 0.083 0.917 20 C -0.055 4.055 21 N -0.949 5.949 22 Si 0.970 3.030 23 H -0.293 1.293 24 H -0.267 1.267 25 H -0.294 1.294 26 C 0.156 3.844 27 C -0.087 4.087 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.197 0.803 36 H 0.171 0.829 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.249 0.751 44 H 0.035 0.965 45 H 0.043 0.957 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 1.618 22.196 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.019 4.019 4 C -0.029 4.029 5 O -0.227 6.227 6 C 0.032 3.968 7 C -0.115 4.115 8 N -0.169 5.169 9 C -0.049 4.049 10 C -0.148 4.148 11 C 0.353 3.647 12 O -0.446 6.446 13 N -0.298 5.298 14 C -0.054 4.054 15 C -0.004 4.004 16 C -0.018 4.018 17 N -0.352 5.352 18 C -0.349 4.349 19 H 0.101 0.899 20 C -0.249 4.249 21 N -0.597 5.597 22 Si 0.799 3.201 23 H -0.220 1.220 24 H -0.191 1.191 25 H -0.221 1.221 26 C 0.029 3.971 27 C -0.113 4.113 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.213 0.787 36 H 0.188 0.812 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.622 1.492 22.581 23.880 hybrid contribution -1.325 0.347 -1.770 2.238 sum -8.947 1.839 20.811 22.728 Atomic orbital electron populations 1.22901 0.79461 1.03623 1.01007 1.87918 1.21495 1.28652 1.95678 1.22775 0.90817 0.85286 1.03023 1.23343 0.94742 0.99796 0.85015 1.86185 1.18087 1.77124 1.41293 1.19834 0.84729 0.97353 0.94890 1.23613 0.88438 0.99939 0.99548 1.67672 1.14131 1.12369 1.22730 1.22831 1.00932 0.93862 0.87305 1.20599 0.94220 1.03577 0.96439 1.18316 0.82314 0.81058 0.83041 1.90739 1.30788 1.36282 1.86755 1.47305 1.30071 1.47934 1.04520 1.22040 0.86084 0.93426 1.03864 1.22523 0.96657 0.96967 0.84282 1.22932 0.95506 0.90722 0.92648 1.46042 1.12049 1.11746 1.65371 1.19206 0.89406 1.00661 1.25616 0.89905 1.25485 0.99879 0.98308 1.01252 1.69999 1.27328 1.13567 1.48854 0.85182 0.79758 0.77113 0.78018 1.21998 1.19133 1.22084 1.22325 0.87178 0.96880 0.90715 1.21431 0.94164 0.98115 0.97623 0.93668 0.89282 0.92149 0.87769 0.92118 0.89697 0.87179 0.78651 0.81156 0.92249 0.90769 0.90342 0.86903 0.93396 0.92467 0.94240 0.94729 0.93817 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.55 16 2 O -0.42 -7.46 10.67 -144.34 -1.54 -9.00 16 3 C 0.06 0.67 6.32 71.98 0.45 1.12 16 4 C 0.05 0.55 5.13 71.98 0.37 0.92 16 5 O -0.31 -6.63 10.11 -88.06 -0.89 -7.52 16 6 C 0.08 1.81 6.70 22.56 0.15 1.96 16 7 C 0.04 0.85 10.21 84.83 0.87 1.72 16 8 N -0.46 -11.25 10.34 -194.39 -2.01 -13.26 16 9 C 0.11 2.93 10.81 85.03 0.92 3.85 16 10 C -0.14 -4.20 5.19 -20.01 -0.10 -4.31 16 11 C 0.56 19.69 7.36 86.79 0.64 20.33 16 12 O -0.57 -22.29 16.48 -3.87 -0.06 -22.35 16 13 N -0.57 -20.68 3.12 -824.78 -2.57 -23.25 16 14 C 0.09 3.13 8.11 127.77 1.04 4.16 16 15 C 0.10 3.91 4.66 45.55 0.21 4.12 16 16 C 0.11 4.37 8.31 83.17 0.69 5.06 16 17 N -0.63 -30.30 2.46 -738.03 -1.82 -32.12 16 18 C -0.22 -11.65 10.20 84.04 0.86 -10.80 16 19 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 20 C -0.06 -2.99 5.50 84.86 0.47 -2.52 16 21 N -0.95 -54.60 11.76 21.65 0.25 -54.34 16 22 Si 0.97 43.75 29.56 68.60 2.03 45.78 16 23 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 26 C 0.16 7.13 6.27 83.26 0.52 7.65 16 27 C -0.09 -2.32 7.68 22.83 0.18 -2.14 16 28 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.86 7.67 -2.39 -0.02 0.84 16 34 H 0.11 0.70 7.67 -2.39 -0.02 0.68 16 35 H 0.20 2.27 6.30 -2.91 -0.02 2.25 16 36 H 0.17 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.06 2.01 6.90 -2.38 -0.02 2.00 16 38 H 0.07 2.31 5.93 -2.39 -0.01 2.29 16 39 H 0.08 3.45 5.13 -2.39 -0.01 3.44 16 40 H 0.11 4.16 7.32 -2.39 -0.02 4.14 16 41 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.04 2.21 6.74 -2.38 -0.02 2.19 16 46 H 0.15 4.13 5.54 -2.91 -0.02 4.11 16 Total: -1.00 -69.70 377.80 2.89 -66.81 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.00 Total: 16.60 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 8.50 Total: 32.66 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.15 Total: -122.97 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -2.49 Total: -38.87 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -69.70 2.89 -66.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723802479.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.313 kcal (2) G-P(sol) polarization free energy of solvation -69.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds