Wall clock time and date at job start Tue Mar 31 2020 18:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35435 * 119.47467 * 2 1 4 4 C 1.35754 * 121.23205 * 179.97438 * 3 2 1 5 5 C 1.39469 * 120.13499 * 0.02705 * 4 3 2 6 6 C 1.39343 * 118.95228 * 359.71604 * 5 4 3 7 7 C 1.47087 * 120.58285 * 180.27108 * 6 5 4 8 8 O 1.21651 * 119.99780 * 173.99182 * 7 6 5 9 9 N 1.34776 * 120.00043 * 353.99436 * 7 6 5 10 10 C 1.46500 * 119.99845 * 185.27788 * 9 7 6 11 11 C 1.53003 * 109.47143 * 185.20793 * 10 9 7 12 12 N 1.46495 * 109.54473 * 302.50073 * 11 10 9 13 13 C 1.36941 * 119.99632 * 303.42888 * 12 11 10 14 14 H 1.07996 * 120.00544 * 4.61726 * 13 12 11 15 15 C 1.38813 * 119.99624 * 184.61883 * 13 12 11 16 16 N 1.31616 * 119.99997 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00066 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46852 * 90.00254 * 17 15 13 19 19 H 1.48502 * 109.46994 * 210.00259 * 17 15 13 20 20 H 1.48497 * 109.47204 * 330.00123 * 17 15 13 21 21 C 1.53181 * 109.54221 * 182.32030 * 11 10 9 22 22 C 1.53108 * 109.15524 * 183.24432 * 21 11 10 23 23 O 1.42900 * 109.48808 * 57.47458 * 22 21 11 24 24 C 1.42902 * 114.09796 * 298.89205 * 23 22 21 25 25 C 1.53092 * 109.41814 * 61.15704 * 24 23 22 26 26 C 1.34657 * 119.47066 * 179.97438 * 2 1 3 27 27 O 1.21881 * 120.10020 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47043 * 270.02305 * 1 2 3 29 29 H 1.09002 * 109.47131 * 30.01823 * 1 2 3 30 30 H 1.09000 * 109.47122 * 150.01738 * 1 2 3 31 31 H 1.08005 * 119.38223 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.93491 * 180.02562 * 4 3 2 33 33 H 1.08002 * 120.52720 * 180.02562 * 5 4 3 34 34 H 0.96996 * 120.00082 * 5.27574 * 9 7 6 35 35 H 1.09005 * 109.47301 * 305.21288 * 10 9 7 36 36 H 1.08997 * 109.47043 * 65.20980 * 10 9 7 37 37 H 0.97000 * 119.99920 * 123.42527 * 12 11 10 38 38 H 0.97005 * 120.00270 * 179.97438 * 16 15 13 39 39 H 1.08995 * 109.52393 * 303.06032 * 21 11 10 40 40 H 1.08999 * 109.52148 * 63.25070 * 21 11 10 41 41 H 1.09004 * 109.40448 * 297.49276 * 22 21 11 42 42 H 1.08999 * 109.48816 * 177.51162 * 22 21 11 43 43 H 1.09008 * 109.48141 * 301.17041 * 24 23 22 44 44 H 1.09007 * 109.49038 * 181.14897 * 24 23 22 45 45 H 1.08998 * 109.52216 * 182.48678 * 25 24 23 46 46 H 1.08999 * 109.57590 * 62.32893 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1314 1.1791 0.0000 4 6 3.4883 1.2207 0.0005 5 6 4.2251 0.0365 0.0005 6 6 3.5463 -1.1803 0.0060 7 6 4.2875 -2.4507 0.0121 8 8 3.6890 -3.5036 0.1272 9 7 5.6298 -2.4484 -0.1096 10 6 6.3575 -3.7151 -0.2198 11 6 7.8627 -3.4406 -0.2153 12 7 8.1985 -2.5322 -1.3144 13 6 7.8699 -2.8641 -2.6017 14 1 7.2979 -3.7585 -2.7995 15 6 8.2720 -2.0508 -3.6523 16 7 7.9566 -2.3700 -4.8896 17 14 9.2608 -0.5033 -3.3100 18 1 10.7100 -0.8268 -3.3328 19 1 8.9642 0.5138 -4.3506 20 1 8.8942 0.0331 -1.9748 21 6 8.6243 -4.7583 -0.3886 22 6 10.1282 -4.4845 -0.3017 23 8 10.4280 -3.8622 0.9493 24 6 9.7807 -2.6033 1.1447 25 6 8.2629 -2.8017 1.1182 26 6 2.1275 -1.1723 0.0005 27 8 1.5102 -2.2233 0.0015 28 1 -0.3633 0.0004 1.0276 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8901 -0.5136 31 1 1.5728 2.1035 0.0004 32 1 3.9983 2.1727 0.0009 33 1 5.3048 0.0623 0.0013 34 1 6.1140 -1.6080 -0.1243 35 1 6.1023 -4.3554 0.6246 36 1 6.0818 -4.2128 -1.1495 37 1 8.6536 -1.6956 -1.1303 38 1 8.2372 -1.8015 -5.6238 39 1 8.3356 -5.4525 0.4005 40 1 8.3871 -5.1910 -1.3605 41 1 10.4237 -3.8235 -1.1165 42 1 10.6741 -5.4246 -0.3802 43 1 10.0717 -1.9175 0.3488 44 1 10.0763 -2.1880 2.1082 45 1 7.7675 -1.8365 1.2228 46 1 7.9656 -3.4547 1.9387 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724369506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:49 Heat of formation + Delta-G solvation = -84.588630 kcal Electronic energy + Delta-G solvation = -30218.766674 eV Core-core repulsion = 26108.644902 eV Total energy + Delta-G solvation = -4110.121772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.43857 -41.07881 -39.93900 -38.10306 -37.33995 -35.66156 -35.01411 -33.86812 -32.02180 -31.70383 -31.17053 -28.78568 -28.19279 -25.88968 -25.55767 -24.42588 -23.76305 -23.29657 -21.68091 -20.19932 -19.82466 -19.10409 -18.48433 -17.83011 -17.19723 -17.07866 -16.95161 -16.85269 -16.59651 -16.30358 -16.15633 -15.75595 -15.45603 -15.37672 -14.98910 -14.67892 -14.27985 -14.23999 -14.12560 -13.68845 -13.59885 -13.50944 -13.24610 -13.11814 -13.01115 -12.87164 -12.75910 -12.68818 -12.19295 -12.05351 -11.75579 -11.54029 -11.32279 -11.19014 -11.06701 -11.00060 -10.73653 -10.39382 -9.98349 -9.32071 -9.01341 -7.94475 -5.31371 -0.53335 0.86950 1.37317 1.45896 1.51080 1.52243 1.81633 2.38237 2.53160 2.79197 3.03992 3.35063 3.44707 3.60544 3.71105 3.78853 3.87251 3.94481 4.01194 4.08417 4.15980 4.18455 4.38767 4.41148 4.42249 4.54940 4.68239 4.71923 4.76062 4.77992 4.85220 4.85982 4.97190 5.00040 5.04670 5.17143 5.18770 5.25465 5.27334 5.52366 5.57162 5.85300 5.96517 6.26558 6.33510 6.67347 6.95784 7.12675 7.36666 7.81948 8.05656 9.27214 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012040 B = 0.003980 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2324.958889 B = 7033.182111 C = 7986.640677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.495 5.495 3 C 0.185 3.815 4 C -0.246 4.246 5 C 0.056 3.944 6 C -0.323 4.323 7 C 0.557 3.443 8 O -0.587 6.587 9 N -0.694 5.694 10 C 0.131 3.869 11 C 0.195 3.805 12 N -0.731 5.731 13 C -0.209 4.209 14 H 0.046 0.954 15 C -0.062 4.062 16 N -0.988 5.988 17 Si 0.949 3.051 18 H -0.287 1.287 19 H -0.304 1.304 20 H -0.233 1.233 21 C -0.153 4.153 22 C 0.077 3.923 23 O -0.394 6.394 24 C 0.061 3.939 25 C -0.147 4.147 26 C 0.512 3.488 27 O -0.578 6.578 28 H 0.092 0.908 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.233 0.767 32 H 0.199 0.801 33 H 0.154 0.846 34 H 0.406 0.594 35 H 0.062 0.938 36 H 0.024 0.976 37 H 0.370 0.630 38 H 0.254 0.746 39 H 0.077 0.923 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.100 0.900 43 H 0.044 0.956 44 H 0.121 0.879 45 H 0.090 0.910 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 16.439 16.056 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.202 5.202 3 C 0.055 3.945 4 C -0.268 4.268 5 C 0.033 3.967 6 C -0.330 4.330 7 C 0.347 3.653 8 O -0.468 6.468 9 N -0.346 5.346 10 C 0.005 3.995 11 C 0.105 3.895 12 N -0.376 5.376 13 C -0.340 4.340 14 H 0.064 0.936 15 C -0.252 4.252 16 N -0.639 5.639 17 Si 0.777 3.223 18 H -0.214 1.214 19 H -0.231 1.231 20 H -0.156 1.156 21 C -0.193 4.193 22 C 0.000 4.000 23 O -0.313 6.313 24 C -0.016 4.016 25 C -0.185 4.185 26 C 0.314 3.686 27 O -0.461 6.461 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.249 0.751 32 H 0.216 0.784 33 H 0.171 0.829 34 H 0.244 0.756 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.205 0.795 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.118 0.882 43 H 0.063 0.937 44 H 0.139 0.861 45 H 0.109 0.891 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.283 14.783 16.096 23.036 hybrid contribution 0.424 0.410 -1.221 1.356 sum -6.859 15.193 14.875 22.342 Atomic orbital electron populations 1.22510 0.74858 1.06210 1.05368 1.45631 1.10982 1.06532 1.57092 1.23315 0.94633 0.89863 0.86675 1.21195 0.92869 0.99794 1.12916 1.22440 1.01840 0.90930 0.81536 1.20702 0.93386 0.94805 1.24104 1.18068 0.82305 0.88788 0.76160 1.90770 1.69370 1.34697 1.51976 1.45416 1.05381 1.10168 1.73647 1.21556 0.93134 0.85583 0.99242 1.19945 0.90136 0.90975 0.88437 1.42717 1.71241 1.21407 1.02235 1.18690 1.25997 1.06294 0.83019 0.93558 1.25459 1.02558 1.02684 0.94546 1.69918 1.53446 1.41179 0.99338 0.85515 0.78560 0.79713 0.78558 1.21370 1.23104 1.15625 1.22438 0.97039 0.98107 1.01757 1.22356 0.94305 0.97879 0.85478 1.87834 1.70099 1.35636 1.37716 1.22696 0.90964 0.85295 1.02618 1.22384 0.97683 1.02697 0.95727 1.17003 0.88505 0.83657 0.79421 1.90937 1.69911 1.31621 1.53679 0.88932 0.84378 0.91666 0.75062 0.78394 0.82872 0.75649 0.91936 0.95783 0.79493 0.93716 0.90490 0.92885 0.94118 0.88225 0.93724 0.86130 0.89124 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 10.35 127.77 1.32 1.95 16 2 N -0.50 -9.57 2.98 -673.19 -2.00 -11.57 16 3 C 0.19 1.60 10.25 83.56 0.86 2.46 16 4 C -0.25 -2.64 9.99 21.99 0.22 -2.42 16 5 C 0.06 1.17 9.63 22.83 0.22 1.39 16 6 C -0.32 -10.83 5.92 -19.79 -0.12 -10.95 16 7 C 0.56 23.61 7.73 86.57 0.67 24.27 16 8 O -0.59 -31.09 15.36 16.32 0.25 -30.84 16 9 N -0.69 -25.50 5.06 -466.68 -2.36 -27.86 16 10 C 0.13 5.17 4.35 86.38 0.38 5.54 16 11 C 0.20 6.74 0.41 3.73 0.00 6.74 16 12 N -0.73 -29.34 3.60 -302.80 -1.09 -30.43 16 13 C -0.21 -10.96 9.16 84.03 0.77 -10.19 16 14 H 0.05 2.84 6.96 -2.91 -0.02 2.82 16 15 C -0.06 -3.42 5.50 84.86 0.47 -2.95 16 16 N -0.99 -62.03 13.97 21.65 0.30 -61.72 16 17 Si 0.95 41.40 27.78 68.60 1.91 43.30 16 18 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 19 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 20 H -0.23 -8.22 6.46 99.48 0.64 -7.58 16 21 C -0.15 -5.32 4.86 30.69 0.15 -5.17 16 22 C 0.08 2.47 6.68 72.02 0.48 2.95 16 23 O -0.39 -11.74 10.77 -148.98 -1.60 -13.35 16 24 C 0.06 1.51 6.67 72.01 0.48 1.99 16 25 C -0.15 -3.77 4.79 30.69 0.15 -3.62 16 26 C 0.51 17.64 7.44 85.16 0.63 18.27 16 27 O -0.58 -26.51 14.88 15.58 0.23 -26.28 16 28 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.14 0.27 8.00 -2.39 -0.02 0.25 16 30 H 0.06 1.28 7.38 -2.39 -0.02 1.26 16 31 H 0.23 -1.04 8.02 -2.91 -0.02 -1.07 16 32 H 0.20 0.39 8.06 -2.91 -0.02 0.36 16 33 H 0.15 2.62 6.49 -2.91 -0.02 2.61 16 34 H 0.41 12.50 5.47 -92.71 -0.51 12.00 16 35 H 0.06 2.40 8.09 -2.38 -0.02 2.38 16 36 H 0.02 1.16 7.11 -2.39 -0.02 1.14 16 37 H 0.37 13.70 4.47 -92.71 -0.41 13.29 16 38 H 0.25 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 2.15 7.50 -2.39 -0.02 2.13 16 41 H 0.04 1.50 7.75 -2.39 -0.02 1.48 16 42 H 0.10 2.85 8.14 -2.39 -0.02 2.84 16 43 H 0.04 1.17 7.03 -2.38 -0.02 1.15 16 44 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.09 1.96 7.24 -2.39 -0.02 1.94 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -96.78 367.38 2.35 -94.44 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.04 Total: 34.05 kcal Atomic # 6 Polarization: 23.59 SS G_CDS: 6.68 Total: 30.26 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.15 Total: -131.58 kcal Atomic # 8 Polarization: -69.35 SS G_CDS: -1.12 Total: -70.47 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.91 Total: 43.30 kcal Total: -96.78 2.35 -94.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724369506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.850 kcal (2) G-P(sol) polarization free energy of solvation -96.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds