Wall clock time and date at job start Tue Mar 31 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99886 * 2 1 4 4 H 1.08000 * 119.99767 * 202.70665 * 3 2 1 5 5 C 1.38818 * 120.00059 * 22.70324 * 3 2 1 6 6 N 1.31624 * 119.99857 * 11.50694 * 5 3 2 7 7 Si 1.86797 * 119.99996 * 191.51030 * 5 3 2 8 8 H 1.48492 * 109.47467 * 89.99987 * 7 5 3 9 9 H 1.48501 * 109.46991 * 209.99989 * 7 5 3 10 10 H 1.48498 * 109.47111 * 329.99563 * 7 5 3 11 11 C 1.46490 * 120.00150 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47059 * 270.00314 * 11 2 1 13 13 O 1.42898 * 109.47173 * 65.00405 * 12 11 2 14 14 C 1.42899 * 113.99889 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46818 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47570 * 64.99940 * 15 14 13 17 17 C 1.34774 * 120.00110 * 180.02562 * 16 15 14 18 18 O 1.21524 * 120.00286 * 359.97438 * 17 16 15 19 19 C 1.48035 * 119.99665 * 179.97438 * 17 16 15 20 20 C 1.39556 * 119.99780 * 179.97438 * 19 17 16 21 21 C 1.37815 * 120.00160 * 179.97438 * 20 19 17 22 22 C 1.39563 * 120.00054 * 0.02562 * 21 20 19 23 23 C 1.48028 * 120.00144 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00252 * 180.02562 * 23 22 21 25 25 O 1.21535 * 119.99971 * 359.97438 * 23 22 21 26 26 C 1.39553 * 119.99461 * 0.26822 * 22 21 20 27 27 C 1.37816 * 120.00240 * 359.47689 * 26 22 21 28 28 H 1.08995 * 109.47544 * 273.91811 * 1 2 3 29 29 H 1.08999 * 109.46991 * 33.92453 * 1 2 3 30 30 H 1.09004 * 109.47013 * 153.91519 * 1 2 3 31 31 H 0.96994 * 119.99432 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47568 * 150.00167 * 11 2 1 33 33 H 1.09005 * 109.47357 * 30.00245 * 11 2 1 34 34 H 1.08994 * 109.47424 * 304.99670 * 12 11 2 35 35 H 1.09009 * 109.47028 * 185.00117 * 12 11 2 36 36 H 1.09001 * 109.47474 * 59.99786 * 14 13 12 37 37 H 1.08997 * 109.47268 * 299.99095 * 14 13 12 38 38 H 1.09004 * 109.47151 * 304.99350 * 15 14 13 39 39 H 1.09001 * 109.47027 * 184.99932 * 15 14 13 40 40 H 0.97005 * 119.99383 * 359.97438 * 16 15 14 41 41 H 1.08004 * 120.00117 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.00078 * 179.97438 * 21 20 19 43 43 H 0.97004 * 119.99419 * 359.97438 * 24 23 22 44 44 H 0.96998 * 120.00046 * 179.72110 * 24 23 22 45 45 H 1.08004 * 119.99454 * 179.70269 * 26 22 21 46 46 H 1.08005 * 119.99958 * 180.23341 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2222 -0.3610 5 6 1.5363 2.3416 0.4640 6 7 0.3916 2.2654 1.1093 7 14 2.3352 4.0047 0.1725 8 1 1.8559 4.5651 -1.1164 9 1 1.9744 4.9278 1.2783 10 1 3.8106 3.8433 0.1240 11 6 2.1975 -1.2686 0.0006 12 6 2.4524 -1.7097 1.4433 13 8 1.2060 -1.9926 2.0822 14 6 1.3323 -2.4149 3.4415 15 6 -0.0569 -2.6879 4.0219 16 7 -0.6658 -3.8200 3.3194 17 6 -1.8986 -4.2424 3.6634 18 8 -2.5048 -3.6844 4.5567 19 6 -2.5141 -5.3860 2.9530 20 6 -3.7904 -5.8237 3.3096 21 6 -4.3637 -6.8881 2.6480 22 6 -3.6678 -7.5286 1.6217 23 6 -4.2838 -8.6715 0.9107 24 7 -3.6115 -9.2904 -0.0800 25 8 -5.3955 -9.0524 1.2209 26 6 -2.3891 -7.0948 1.2693 27 6 -1.8179 -6.0271 1.9274 28 1 -0.3634 0.0702 1.0252 29 1 -0.3633 0.8527 -0.5735 30 1 -0.3633 -0.9230 -0.4519 31 1 -0.0372 3.0729 1.4331 32 1 3.1500 -1.1386 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 2.9641 -0.9122 1.9820 35 1 3.0733 -2.6057 1.4450 36 1 1.8205 -1.6317 4.0215 37 1 1.9299 -3.3254 3.4851 38 1 -0.6826 -1.8041 3.8978 39 1 0.0324 -2.9238 5.0823 40 1 -0.1820 -4.2652 2.6061 41 1 -4.3288 -5.3284 4.1040 42 1 -5.3512 -7.2271 2.9242 43 1 -2.7241 -8.9866 -0.3273 44 1 -4.0136 -10.0418 -0.5432 45 1 -1.8486 -7.5935 0.4784 46 1 -0.8298 -5.6890 1.6521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725438907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:05 Heat of formation + Delta-G solvation = -66.751768 kcal Electronic energy + Delta-G solvation = -28037.410507 eV Core-core repulsion = 23928.062199 eV Total energy + Delta-G solvation = -4109.348308 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71856 -39.75958 -38.13587 -37.58014 -35.49135 -34.55502 -34.31330 -31.97618 -31.38527 -31.27345 -29.44823 -27.85139 -25.73125 -25.30263 -23.14075 -22.99985 -22.43581 -21.56126 -20.43808 -20.32710 -18.85796 -17.86897 -17.20635 -16.89334 -16.39185 -16.14554 -15.49206 -15.43844 -15.23520 -15.00786 -14.96109 -14.66588 -14.48842 -13.98433 -13.93953 -13.71936 -13.39260 -13.24450 -12.92738 -12.72913 -12.46374 -12.18379 -11.59386 -11.54908 -11.41437 -10.93555 -10.88222 -10.79230 -10.56435 -10.52716 -10.18588 -10.10921 -10.05781 -9.92653 -9.81705 -9.45307 -9.44881 -9.07576 -9.05862 -8.49856 -6.69053 -5.66747 -3.13570 0.09778 0.92981 2.15554 2.91690 3.00024 3.05155 3.38967 3.44941 3.46612 3.58355 4.09059 4.24477 4.28964 4.47208 4.52741 4.62648 4.87286 4.97372 5.08889 5.22656 5.26048 5.43439 5.51611 5.53894 5.62307 5.66483 5.73878 5.84571 5.92656 5.97427 6.06118 6.15940 6.19194 6.27676 6.33608 6.39545 6.50961 6.73134 6.83315 6.93254 7.40796 7.50315 7.73286 7.77144 7.81729 7.96611 8.09916 8.44852 9.29203 9.92774 10.43016 11.37211 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002178 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.176947 B =12852.583411 C =13340.089683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.596 5.596 3 C -0.258 4.258 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.902 5.902 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.153 3.847 12 C 0.042 3.958 13 O -0.367 6.367 14 C 0.050 3.950 15 C 0.123 3.877 16 N -0.711 5.711 17 C 0.552 3.448 18 O -0.534 6.534 19 C -0.100 4.100 20 C -0.068 4.068 21 C -0.066 4.066 22 C -0.121 4.121 23 C 0.563 3.437 24 N -0.850 5.850 25 O -0.537 6.537 26 C -0.093 4.093 27 C -0.093 4.093 28 H 0.032 0.968 29 H 0.037 0.963 30 H -0.008 1.008 31 H 0.251 0.749 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.025 0.975 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.403 0.597 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.402 0.598 44 H 0.406 0.594 45 H 0.133 0.867 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.724 -23.061 1.099 23.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.388 4.388 4 H 0.084 0.916 5 C -0.196 4.196 6 N -0.547 5.547 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.025 3.975 12 C -0.037 4.037 13 O -0.286 6.286 14 C -0.028 4.028 15 C 0.000 4.000 16 N -0.363 5.363 17 C 0.339 3.661 18 O -0.412 6.412 19 C -0.103 4.103 20 C -0.087 4.087 21 C -0.085 4.085 22 C -0.124 4.124 23 C 0.349 3.651 24 N -0.414 5.414 25 O -0.414 6.414 26 C -0.111 4.111 27 C -0.111 4.111 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.011 0.989 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.238 0.762 41 H 0.163 0.837 42 H 0.161 0.839 43 H 0.232 0.768 44 H 0.237 0.763 45 H 0.151 0.849 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.145 -22.565 2.035 22.874 hybrid contribution 1.357 0.666 -0.589 1.622 sum -1.788 -21.899 1.446 22.020 Atomic orbital electron populations 1.20692 0.82149 0.94809 0.99356 1.43882 1.02129 1.00215 1.85629 1.19197 0.98179 0.85642 1.35768 0.91573 1.25045 0.97783 0.98411 0.98389 1.70095 1.18039 1.26900 1.39618 0.86294 0.78707 0.84391 0.77333 1.21549 1.21804 1.20620 1.20890 0.96401 0.88929 0.91316 1.23532 0.85000 0.96906 0.98285 1.88014 1.30545 1.87365 1.22669 1.22613 0.95431 0.98550 0.86197 1.21467 0.93666 0.89393 0.95435 1.45831 1.17212 1.34321 1.38938 1.18249 0.81395 0.83313 0.83184 1.90787 1.62056 1.57357 1.31011 1.20247 0.95886 0.96737 0.97453 1.21323 0.93581 0.94939 0.98860 1.21281 1.00174 0.93813 0.93241 1.20051 0.95615 0.97726 0.99053 1.18327 0.84920 0.82320 0.79503 1.43758 1.21972 1.37152 1.38517 1.90829 1.19358 1.65641 1.65609 1.21191 0.94059 0.96573 0.99307 1.21294 1.00083 0.95066 0.94693 0.94947 0.94411 0.98899 0.93844 0.92382 0.93894 0.93262 0.95735 0.91880 0.93778 0.89774 0.90246 0.76159 0.83671 0.83869 0.76791 0.76271 0.84942 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.43 8.61 59.85 0.52 4.95 16 2 N -0.60 -14.91 2.89 -181.12 -0.52 -15.44 16 3 C -0.26 -7.03 9.67 -15.06 -0.15 -7.17 16 4 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 5 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16 6 N -0.90 -26.56 10.62 55.49 0.59 -25.97 16 7 Si 0.90 21.84 29.57 -169.99 -5.03 16.81 16 8 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 9 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 C 0.15 3.00 6.11 -4.05 -0.02 2.98 16 12 C 0.04 0.74 6.28 37.16 0.23 0.97 16 13 O -0.37 -6.48 9.84 -35.23 -0.35 -6.83 16 14 C 0.05 0.67 6.07 37.16 0.23 0.90 16 15 C 0.12 1.66 6.06 -4.04 -0.02 1.64 16 16 N -0.71 -8.65 5.45 -61.19 -0.33 -8.98 16 17 C 0.55 7.45 7.78 -12.24 -0.10 7.36 16 18 O -0.53 -9.10 16.33 5.34 0.09 -9.02 16 19 C -0.10 -1.08 5.88 -104.90 -0.62 -1.69 16 20 C -0.07 -0.71 9.58 -39.24 -0.38 -1.09 16 21 C -0.07 -0.64 9.58 -39.24 -0.38 -1.01 16 22 C -0.12 -1.05 5.88 -104.90 -0.62 -1.66 16 23 C 0.56 5.09 8.05 -12.25 -0.10 4.99 16 24 N -0.85 -4.04 8.82 30.57 0.27 -3.77 16 25 O -0.54 -6.96 17.17 5.34 0.09 -6.87 16 26 C -0.09 -0.62 9.53 -39.25 -0.37 -1.00 16 27 C -0.09 -0.75 9.53 -39.25 -0.37 -1.12 16 28 H 0.03 0.90 7.43 -51.93 -0.39 0.52 16 29 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 30 H -0.01 -0.17 7.85 -51.93 -0.41 -0.58 16 31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.06 1.07 8.03 -51.93 -0.42 0.65 16 33 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.35 8.14 -51.92 -0.42 -0.08 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.40 4.00 6.50 -40.82 -0.27 3.74 16 41 H 0.15 1.51 7.64 -52.48 -0.40 1.11 16 42 H 0.14 1.31 7.64 -52.49 -0.40 0.91 16 43 H 0.40 0.80 6.85 -40.82 -0.28 0.52 16 44 H 0.41 1.45 8.93 -40.82 -0.36 1.09 16 45 H 0.13 0.41 6.39 -52.48 -0.34 0.08 16 46 H 0.14 0.82 6.39 -52.48 -0.34 0.48 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -36.45 389.45 -8.02 -44.46 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.46 Total: 0.72 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -2.24 Total: 9.01 kcal Atomic # 7 Polarization: -54.16 SS G_CDS: 0.00 Total: -54.16 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.17 Total: -22.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.45 -8.02 -44.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725438907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.288 kcal (2) G-P(sol) polarization free energy of solvation -36.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds