Wall clock time and date at job start Tue Mar 31 2020 18:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99886 * 2 1 4 4 H 1.08000 * 119.99767 * 202.70665 * 3 2 1 5 5 C 1.38818 * 120.00059 * 22.70324 * 3 2 1 6 6 N 1.31624 * 119.99857 * 11.50694 * 5 3 2 7 7 Si 1.86797 * 119.99996 * 191.51030 * 5 3 2 8 8 H 1.48492 * 109.47467 * 89.99987 * 7 5 3 9 9 H 1.48501 * 109.46991 * 209.99989 * 7 5 3 10 10 H 1.48498 * 109.47111 * 329.99563 * 7 5 3 11 11 C 1.46490 * 120.00150 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.47059 * 270.00314 * 11 2 1 13 13 O 1.42898 * 109.47173 * 65.00405 * 12 11 2 14 14 C 1.42899 * 113.99889 * 180.02562 * 13 12 11 15 15 C 1.53006 * 109.46818 * 179.97438 * 14 13 12 16 16 N 1.46494 * 109.47570 * 64.99940 * 15 14 13 17 17 C 1.34774 * 120.00110 * 180.02562 * 16 15 14 18 18 O 1.21524 * 120.00286 * 359.97438 * 17 16 15 19 19 C 1.48035 * 119.99665 * 179.97438 * 17 16 15 20 20 C 1.39556 * 119.99780 * 179.97438 * 19 17 16 21 21 C 1.37815 * 120.00160 * 179.97438 * 20 19 17 22 22 C 1.39563 * 120.00054 * 0.02562 * 21 20 19 23 23 C 1.48028 * 120.00144 * 180.02562 * 22 21 20 24 24 N 1.34778 * 120.00252 * 180.02562 * 23 22 21 25 25 O 1.21535 * 119.99971 * 359.97438 * 23 22 21 26 26 C 1.39553 * 119.99461 * 0.26822 * 22 21 20 27 27 C 1.37816 * 120.00240 * 359.47689 * 26 22 21 28 28 H 1.08995 * 109.47544 * 273.91811 * 1 2 3 29 29 H 1.08999 * 109.46991 * 33.92453 * 1 2 3 30 30 H 1.09004 * 109.47013 * 153.91519 * 1 2 3 31 31 H 0.96994 * 119.99432 * 180.02562 * 6 5 3 32 32 H 1.09003 * 109.47568 * 150.00167 * 11 2 1 33 33 H 1.09005 * 109.47357 * 30.00245 * 11 2 1 34 34 H 1.08994 * 109.47424 * 304.99670 * 12 11 2 35 35 H 1.09009 * 109.47028 * 185.00117 * 12 11 2 36 36 H 1.09001 * 109.47474 * 59.99786 * 14 13 12 37 37 H 1.08997 * 109.47268 * 299.99095 * 14 13 12 38 38 H 1.09004 * 109.47151 * 304.99350 * 15 14 13 39 39 H 1.09001 * 109.47027 * 184.99932 * 15 14 13 40 40 H 0.97005 * 119.99383 * 359.97438 * 16 15 14 41 41 H 1.08004 * 120.00117 * 359.97438 * 20 19 17 42 42 H 1.08000 * 120.00078 * 179.97438 * 21 20 19 43 43 H 0.97004 * 119.99419 * 359.97438 * 24 23 22 44 44 H 0.96998 * 120.00046 * 179.72110 * 24 23 22 45 45 H 1.08004 * 119.99454 * 179.70269 * 26 22 21 46 46 H 1.08005 * 119.99958 * 180.23341 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2222 -0.3610 5 6 1.5363 2.3416 0.4640 6 7 0.3916 2.2654 1.1093 7 14 2.3352 4.0047 0.1725 8 1 1.8559 4.5651 -1.1164 9 1 1.9744 4.9278 1.2783 10 1 3.8106 3.8433 0.1240 11 6 2.1975 -1.2686 0.0006 12 6 2.4524 -1.7097 1.4433 13 8 1.2060 -1.9926 2.0822 14 6 1.3323 -2.4149 3.4415 15 6 -0.0569 -2.6879 4.0219 16 7 -0.6658 -3.8200 3.3194 17 6 -1.8986 -4.2424 3.6634 18 8 -2.5048 -3.6844 4.5567 19 6 -2.5141 -5.3860 2.9530 20 6 -3.7904 -5.8237 3.3096 21 6 -4.3637 -6.8881 2.6480 22 6 -3.6678 -7.5286 1.6217 23 6 -4.2838 -8.6715 0.9107 24 7 -3.6115 -9.2904 -0.0800 25 8 -5.3955 -9.0524 1.2209 26 6 -2.3891 -7.0948 1.2693 27 6 -1.8179 -6.0271 1.9274 28 1 -0.3634 0.0702 1.0252 29 1 -0.3633 0.8527 -0.5735 30 1 -0.3633 -0.9230 -0.4519 31 1 -0.0372 3.0729 1.4331 32 1 3.1500 -1.1386 -0.5133 33 1 1.6085 -2.0286 -0.5130 34 1 2.9641 -0.9122 1.9820 35 1 3.0733 -2.6057 1.4450 36 1 1.8205 -1.6317 4.0215 37 1 1.9299 -3.3254 3.4851 38 1 -0.6826 -1.8041 3.8978 39 1 0.0324 -2.9238 5.0823 40 1 -0.1820 -4.2652 2.6061 41 1 -4.3288 -5.3284 4.1040 42 1 -5.3512 -7.2271 2.9242 43 1 -2.7241 -8.9866 -0.3273 44 1 -4.0136 -10.0418 -0.5432 45 1 -1.8486 -7.5935 0.4784 46 1 -0.8298 -5.6890 1.6521 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725438907.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:04 Heat of formation + Delta-G solvation = -95.297222 kcal Electronic energy + Delta-G solvation = -28038.648331 eV Core-core repulsion = 23928.062199 eV Total energy + Delta-G solvation = -4110.586132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.52377 -40.65209 -39.14452 -38.71110 -37.20123 -35.82186 -34.94271 -33.43630 -32.64330 -31.95722 -30.73850 -29.31875 -27.79912 -26.12909 -24.79946 -23.88010 -23.33019 -22.44927 -22.10634 -21.24134 -19.54203 -18.75481 -18.66579 -17.90624 -17.57278 -17.40006 -16.88794 -16.39714 -16.22423 -16.16071 -15.85516 -15.77127 -15.50641 -15.28594 -15.14673 -14.94816 -14.61165 -14.49022 -14.14804 -13.85279 -13.57052 -13.44429 -13.12093 -13.01157 -12.71316 -12.50914 -12.47296 -12.31246 -12.18112 -11.99583 -11.77637 -11.64008 -11.36894 -11.11793 -10.76264 -10.60375 -10.35603 -10.32900 -10.12043 -10.00855 -8.71158 -7.76618 -5.24581 -0.65789 0.26658 1.34959 1.47087 1.48530 1.56790 2.02001 2.10610 2.44901 2.53693 2.81928 2.88940 3.36585 3.54137 3.67228 3.80084 3.84212 3.91712 4.01876 4.19266 4.20967 4.29191 4.47553 4.55650 4.58416 4.62910 4.65829 4.72540 4.88275 4.89332 4.96881 5.04366 5.06918 5.17966 5.21995 5.25287 5.32587 5.40110 5.65186 5.68191 5.84841 5.85910 6.37397 6.37665 6.45406 6.49640 7.10703 7.20762 7.24194 7.95041 8.39828 9.26248 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016226 B = 0.002178 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.176947 B =12852.583411 C =13340.089683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.195 3.805 2 N -0.613 5.613 3 C -0.258 4.258 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.938 5.938 7 Si 0.965 3.035 8 H -0.289 1.289 9 H -0.301 1.301 10 H -0.265 1.265 11 C 0.144 3.856 12 C 0.051 3.949 13 O -0.393 6.393 14 C 0.054 3.946 15 C 0.128 3.872 16 N -0.699 5.699 17 C 0.549 3.451 18 O -0.582 6.582 19 C -0.117 4.117 20 C -0.080 4.080 21 C -0.076 4.076 22 C -0.124 4.124 23 C 0.561 3.439 24 N -0.825 5.825 25 O -0.585 6.585 26 C -0.076 4.076 27 C -0.084 4.084 28 H -0.002 1.002 29 H 0.006 0.994 30 H 0.021 0.979 31 H 0.243 0.757 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.019 0.981 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.416 0.584 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.419 0.581 44 H 0.415 0.585 45 H 0.179 0.821 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -25.464 -0.895 25.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.337 5.337 3 C -0.388 4.388 4 H 0.093 0.907 5 C -0.253 4.253 6 N -0.585 5.585 7 Si 0.794 3.206 8 H -0.216 1.216 9 H -0.228 1.228 10 H -0.189 1.189 11 C 0.018 3.982 12 C -0.027 4.027 13 O -0.313 6.313 14 C -0.023 4.023 15 C 0.005 3.995 16 N -0.352 5.352 17 C 0.337 3.663 18 O -0.463 6.463 19 C -0.121 4.121 20 C -0.099 4.099 21 C -0.095 4.095 22 C -0.127 4.127 23 C 0.347 3.653 24 N -0.389 5.389 25 O -0.467 6.467 26 C -0.094 4.094 27 C -0.103 4.103 28 H 0.017 0.983 29 H 0.025 0.975 30 H 0.040 0.960 31 H 0.052 0.948 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.255 0.745 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.252 0.748 44 H 0.247 0.753 45 H 0.196 0.804 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -0.214 -25.027 -0.024 25.028 hybrid contribution 0.521 1.275 -0.036 1.377 sum 0.306 -23.753 -0.061 23.755 Atomic orbital electron populations 1.20317 0.83015 0.94740 0.96960 1.44111 1.02016 1.01716 1.85822 1.19586 0.98374 0.86692 1.34147 0.90677 1.25815 0.98585 1.01868 0.99036 1.70287 1.19707 1.27029 1.41463 0.85286 0.78609 0.80151 0.76525 1.21571 1.22755 1.18910 1.21166 0.96804 0.87019 0.93184 1.23263 0.85310 0.98063 0.96102 1.87967 1.30987 1.87797 1.24532 1.22707 0.95558 0.99918 0.84149 1.21329 0.93181 0.88458 0.96581 1.45709 1.16905 1.33598 1.38960 1.18718 0.81354 0.83575 0.82651 1.90759 1.63216 1.59077 1.33225 1.20132 0.96277 0.96713 0.98947 1.21246 0.93951 0.95541 0.99166 1.21267 1.00325 0.93922 0.94012 1.20187 0.96434 0.97524 0.98554 1.18409 0.84466 0.82371 0.80043 1.43574 1.22277 1.36403 1.36678 1.90815 1.21498 1.67060 1.67281 1.21608 0.92949 0.95517 0.99296 1.21582 1.00801 0.94667 0.93224 0.98328 0.97514 0.96017 0.94765 0.90946 0.91747 0.96247 0.90824 0.92725 0.89657 0.93817 0.88809 0.74530 0.84991 0.84394 0.74782 0.75252 0.80380 0.81961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.96 8.61 127.77 1.10 11.06 16 2 N -0.61 -30.13 2.89 -726.94 -2.10 -32.23 16 3 C -0.26 -13.87 9.67 84.03 0.81 -13.06 16 4 H 0.08 3.84 7.85 -2.91 -0.02 3.81 16 5 C -0.06 -3.29 5.12 84.86 0.43 -2.85 16 6 N -0.94 -56.90 10.62 21.65 0.23 -56.67 16 7 Si 0.97 45.24 29.57 68.60 2.03 47.27 16 8 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 9 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 11 C 0.14 5.24 6.11 86.38 0.53 5.77 16 12 C 0.05 1.65 6.28 71.98 0.45 2.10 16 13 O -0.39 -13.11 9.84 -148.98 -1.47 -14.58 16 14 C 0.05 1.35 6.07 71.98 0.44 1.79 16 15 C 0.13 3.43 6.06 86.38 0.52 3.95 16 16 N -0.70 -16.19 5.45 -465.80 -2.54 -18.73 16 17 C 0.55 14.93 7.78 86.84 0.68 15.60 16 18 O -0.58 -20.91 16.33 -3.79 -0.06 -20.97 16 19 C -0.12 -2.46 5.88 -20.04 -0.12 -2.58 16 20 C -0.08 -1.74 9.58 22.49 0.22 -1.53 16 21 C -0.08 -1.49 9.58 22.49 0.22 -1.27 16 22 C -0.12 -1.91 5.88 -20.04 -0.12 -2.03 16 23 C 0.56 9.14 8.05 86.84 0.70 9.84 16 24 N -0.82 -5.14 8.82 -175.47 -1.55 -6.69 16 25 O -0.59 -15.05 17.17 -3.83 -0.07 -15.12 16 26 C -0.08 -0.72 9.53 22.49 0.21 -0.50 16 27 C -0.08 -1.09 9.53 22.49 0.21 -0.87 16 28 H 0.00 -0.09 7.43 -2.39 -0.02 -0.11 16 29 H 0.01 0.34 7.20 -2.39 -0.02 0.33 16 30 H 0.02 0.95 7.85 -2.39 -0.02 0.93 16 31 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 33 H 0.06 2.07 7.87 -2.38 -0.02 2.05 16 34 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.42 7.03 6.50 -92.70 -0.60 6.43 16 41 H 0.13 3.09 7.64 -2.91 -0.02 3.07 16 42 H 0.14 2.74 7.64 -2.91 -0.02 2.72 16 43 H 0.42 -0.31 6.85 -92.71 -0.64 -0.94 16 44 H 0.41 1.75 8.93 -92.71 -0.83 0.92 16 45 H 0.18 0.01 6.39 -2.91 -0.02 -0.01 16 46 H 0.16 1.19 6.39 -2.91 -0.02 1.17 16 Total: -1.00 -83.75 389.45 -0.26 -84.01 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -1.03 Total: 8.27 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 6.29 Total: 25.43 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -5.96 Total: -114.31 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.59 Total: -50.66 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -83.75 -0.26 -84.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725438907.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.286 kcal (2) G-P(sol) polarization free energy of solvation -83.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds