Wall clock time and date at job start Tue Mar 31 2020 18:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00404 * 2 1 4 4 O 1.42903 * 109.46747 * 134.99804 * 3 2 1 5 5 C 1.35656 * 116.99267 * 180.02562 * 4 3 2 6 6 C 1.39340 * 120.54736 * 0.27066 * 5 4 3 7 7 C 1.38300 * 118.43950 * 180.28732 * 6 5 4 8 8 C 1.38762 * 119.44667 * 359.72844 * 7 6 5 9 9 N 1.31373 * 121.06900 * 359.97438 * 8 7 6 10 10 C 1.32863 * 121.69445 * 0.02562 * 9 8 7 11 11 C 1.47832 * 119.78416 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00134 * 186.47476 * 11 10 9 13 13 N 1.34774 * 119.99951 * 6.47107 * 11 10 9 14 14 C 1.46510 * 119.99923 * 357.28068 * 13 11 10 15 15 C 1.46500 * 120.00253 * 177.28543 * 13 11 10 16 16 C 1.53004 * 109.47270 * 89.99545 * 15 13 11 17 17 H 1.08996 * 109.46665 * 60.00276 * 16 15 13 18 18 O 1.42895 * 109.47272 * 300.00310 * 16 15 13 19 19 C 1.52995 * 109.46880 * 180.02562 * 16 15 13 20 20 N 1.46504 * 109.46820 * 185.00044 * 19 16 15 21 21 C 1.36937 * 119.99768 * 179.72469 * 20 19 16 22 22 H 1.08003 * 120.00190 * 0.27322 * 21 20 19 23 23 C 1.38813 * 119.99700 * 180.27583 * 21 20 19 24 24 N 1.31629 * 119.99723 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00323 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47076 * 89.99682 * 25 23 21 27 27 H 1.48498 * 109.47119 * 209.99769 * 25 23 21 28 28 H 1.48505 * 109.47090 * 329.99959 * 25 23 21 29 29 H 1.07994 * 120.00626 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99801 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99528 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47349 * 15.00120 * 3 2 1 33 33 H 1.08995 * 109.47346 * 254.99576 * 3 2 1 34 34 H 1.08000 * 120.77578 * 0.02562 * 6 5 4 35 35 H 1.08007 * 120.27191 * 179.70613 * 7 6 5 36 36 H 1.08002 * 119.46658 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47122 * 276.12406 * 14 13 11 38 38 H 1.08996 * 109.46902 * 36.12784 * 14 13 11 39 39 H 1.09005 * 109.46593 * 156.12294 * 14 13 11 40 40 H 1.08996 * 109.46617 * 329.99744 * 15 13 11 41 41 H 1.09001 * 109.47245 * 209.99786 * 15 13 11 42 42 H 0.96700 * 114.00526 * 300.00080 * 18 16 15 43 43 H 1.09000 * 109.47355 * 65.00517 * 19 16 15 44 44 H 1.09001 * 109.47656 * 304.99784 * 19 16 15 45 45 H 0.96996 * 120.00199 * 0.02562 * 20 19 16 46 46 H 0.97002 * 119.99683 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2410 0.9527 5 6 3.9077 2.3431 1.0788 6 6 3.6619 3.4772 0.3075 7 6 4.4890 4.5741 0.4670 8 6 5.5272 4.5178 1.3859 9 7 5.7368 3.4397 2.1068 10 6 4.9695 2.3614 1.9893 11 6 5.2431 1.1711 2.8224 12 8 4.6211 0.1434 2.6368 13 7 6.1822 1.2256 3.7876 14 6 6.9733 2.4448 3.9720 15 6 6.4120 0.0655 4.6522 16 6 7.4763 -0.8363 4.0236 17 1 8.4053 -0.2776 3.9107 18 8 7.0281 -1.2795 2.7412 19 6 7.7158 -2.0481 4.9264 20 7 8.8172 -2.8491 4.3864 21 6 9.2173 -3.9875 5.0339 22 1 8.7181 -4.2972 5.9402 23 6 10.2647 -4.7434 4.5253 24 7 10.6490 -5.8379 5.1474 25 14 11.1286 -4.2075 2.9583 26 1 12.2660 -3.3160 3.3002 27 1 11.6359 -5.4034 2.2389 28 1 10.1707 -3.4768 2.0900 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3857 2.1161 0.2660 33 1 2.4757 1.4866 -0.9926 34 1 2.8473 3.4976 -0.4013 35 1 4.3283 5.4670 -0.1191 36 1 6.1736 5.3740 1.5104 37 1 7.8126 2.4420 3.2766 38 1 6.3470 3.3165 3.7821 39 1 7.3487 2.4831 4.9946 40 1 5.4830 -0.4931 4.7651 41 1 6.7539 0.4036 5.6305 42 1 6.2040 -1.7848 2.7655 43 1 6.8113 -2.6550 4.9675 44 1 7.9716 -1.7086 5.9301 45 1 9.2658 -2.5709 3.5727 46 1 11.3811 -6.3659 4.7923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725713270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:29 Heat of formation + Delta-G solvation = -18.554458 kcal Electronic energy + Delta-G solvation = -28992.545385 eV Core-core repulsion = 24885.287069 eV Total energy + Delta-G solvation = -4107.258316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32820 -39.47402 -38.66387 -37.18921 -35.22213 -34.47350 -34.04312 -32.80976 -31.37381 -30.95453 -29.55151 -27.17715 -26.81425 -26.04340 -24.19109 -23.29625 -22.26114 -21.15868 -20.54232 -19.94255 -18.50132 -17.71714 -17.59381 -17.27152 -16.60368 -16.33099 -15.86000 -15.61076 -15.35487 -15.08362 -14.65277 -14.55248 -14.41016 -14.18289 -13.67083 -13.48493 -13.33658 -13.22811 -13.08623 -12.78087 -12.48597 -12.37164 -12.26455 -12.12619 -11.88207 -11.45132 -11.40039 -11.15012 -10.78685 -10.68764 -10.26726 -10.17086 -10.08111 -9.95019 -9.67134 -9.50649 -9.40969 -8.84367 -8.83256 -8.32026 -7.15134 -5.69903 -3.04585 0.34068 0.80731 1.64563 2.69239 2.82188 2.99596 3.46558 3.53322 3.55719 3.58494 3.90608 4.12105 4.22182 4.40553 4.53596 4.57284 4.68462 4.68945 4.81412 4.82913 4.96098 4.98973 5.06557 5.30694 5.32310 5.41710 5.47489 5.53242 5.58171 5.66601 5.74327 5.76054 5.85491 5.94880 6.05587 6.14121 6.16233 6.21827 6.53943 6.61207 6.74913 6.84045 7.31305 7.48221 8.05398 8.20548 8.28850 8.49405 9.29652 10.02290 10.23090 11.48438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.002771 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.210416 B =10100.593742 C =11192.203390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.150 4.150 3 C 0.079 3.921 4 O -0.265 6.265 5 C 0.140 3.860 6 C -0.178 4.178 7 C -0.108 4.108 8 C 0.049 3.951 9 N -0.412 5.412 10 C 0.050 3.950 11 C 0.574 3.426 12 O -0.510 6.510 13 N -0.593 5.593 14 C 0.074 3.926 15 C 0.086 3.914 16 C 0.083 3.917 17 H 0.095 0.905 18 O -0.551 6.551 19 C 0.130 3.870 20 N -0.750 5.750 21 C -0.243 4.243 22 H 0.089 0.911 23 C 0.004 3.996 24 N -0.936 5.936 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.272 1.272 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.376 0.624 43 H 0.030 0.970 44 H 0.033 0.967 45 H 0.365 0.635 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.868 26.910 -10.623 35.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.004 3.996 4 O -0.174 6.174 5 C 0.089 3.911 6 C -0.204 4.204 7 C -0.128 4.128 8 C -0.111 4.111 9 N -0.124 5.124 10 C -0.088 4.088 11 C 0.360 3.640 12 O -0.385 6.385 13 N -0.325 5.325 14 C -0.069 4.069 15 C -0.037 4.037 16 C 0.022 3.978 17 H 0.112 0.888 18 O -0.357 6.357 19 C 0.002 3.998 20 N -0.396 5.396 21 C -0.373 4.373 22 H 0.107 0.893 23 C -0.192 4.192 24 N -0.584 5.584 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.198 1.198 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.143 0.857 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.072 0.928 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.224 0.776 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.199 0.801 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.991 26.207 -10.034 33.884 hybrid contribution -0.382 0.313 -1.677 1.748 sum -19.372 26.520 -11.711 34.867 Atomic orbital electron populations 1.23862 0.95321 1.02533 0.99280 1.22648 0.95585 0.97845 1.00748 1.21991 0.87970 0.97442 0.92220 1.86462 1.40742 1.33228 1.57007 1.19982 0.90798 0.86870 0.93408 1.21757 1.03016 0.93416 1.02237 1.22186 0.94403 0.98538 0.97697 1.22860 0.97430 0.96829 0.93932 1.68188 1.24392 0.99073 1.20738 1.20772 0.94160 0.94919 0.98977 1.17487 0.80188 0.86239 0.80100 1.90797 1.49794 1.30116 1.67763 1.47502 1.36454 1.15107 1.33422 1.22407 0.96492 0.87488 1.00480 1.22285 1.00841 0.87467 0.93146 1.22535 0.96399 0.94211 0.84673 0.88755 1.86514 1.45582 1.75167 1.28403 1.21227 0.92138 0.91074 0.95372 1.42599 1.38902 1.28292 1.29764 1.19066 1.12870 0.98652 1.06699 0.89303 1.24657 0.98871 0.97024 0.98627 1.69715 1.31002 1.16750 1.40943 0.86544 0.79911 0.77669 0.84588 1.21162 1.21782 1.19800 0.87251 0.88439 0.85687 0.91446 0.90854 0.83754 0.84034 0.81745 0.92758 0.87629 0.92344 0.89421 0.89390 0.77571 0.95252 0.94879 0.80139 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 14.31 29.01 0.42 -0.71 16 2 C -0.15 -1.26 9.89 -36.03 -0.36 -1.61 16 3 C 0.08 0.64 5.17 36.00 0.19 0.82 16 4 O -0.26 -3.27 8.20 -40.53 -0.33 -3.60 16 5 C 0.14 1.60 6.71 -38.55 -0.26 1.34 16 6 C -0.18 -1.34 9.13 -39.15 -0.36 -1.69 16 7 C -0.11 -0.65 10.10 -39.36 -0.40 -1.04 16 8 C 0.05 0.36 11.17 -17.55 -0.20 0.16 16 9 N -0.41 -4.35 6.00 -9.71 -0.06 -4.41 16 10 C 0.05 0.65 6.64 -82.88 -0.55 0.10 16 11 C 0.57 8.83 7.20 -12.34 -0.09 8.74 16 12 O -0.51 -9.10 13.37 -22.46 -0.30 -9.40 16 13 N -0.59 -8.18 2.83 -182.69 -0.52 -8.69 16 14 C 0.07 0.81 9.39 59.85 0.56 1.37 16 15 C 0.09 1.20 5.18 -4.04 -0.02 1.18 16 16 C 0.08 1.42 3.27 -26.73 -0.09 1.33 16 17 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 18 O -0.55 -10.68 12.03 -46.97 -0.57 -11.25 16 19 C 0.13 2.63 5.90 -4.04 -0.02 2.61 16 20 N -0.75 -19.12 5.35 -59.91 -0.32 -19.44 16 21 C -0.24 -7.23 10.47 -15.06 -0.16 -7.39 16 22 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 23 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 24 N -0.94 -30.46 13.97 55.49 0.78 -29.68 16 25 Si 0.88 23.47 27.74 -169.99 -4.71 18.75 16 26 H -0.28 -7.45 7.11 56.52 0.40 -7.04 16 27 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 28 H -0.27 -7.07 6.52 56.52 0.37 -6.71 16 29 H 0.11 0.61 8.06 -52.49 -0.42 0.19 16 30 H 0.10 0.48 7.90 -52.49 -0.41 0.07 16 31 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.07 0.40 7.40 -51.93 -0.38 0.02 16 33 H 0.07 0.47 7.71 -51.93 -0.40 0.07 16 34 H 0.14 0.68 6.46 -52.49 -0.34 0.34 16 35 H 0.14 0.37 8.06 -52.48 -0.42 -0.05 16 36 H 0.17 0.67 8.06 -52.49 -0.42 0.25 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.11 1.07 5.17 -53.08 -0.27 0.80 16 39 H 0.06 0.54 7.83 -51.93 -0.41 0.13 16 40 H 0.09 1.27 7.46 -51.93 -0.39 0.88 16 41 H 0.09 1.02 7.85 -51.93 -0.41 0.61 16 42 H 0.38 6.87 8.37 45.56 0.38 7.25 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.37 9.41 5.53 -40.82 -0.23 9.18 16 46 H 0.26 8.00 8.31 -40.82 -0.34 7.66 16 LS Contribution 383.12 15.07 5.77 5.77 Total: -1.00 -37.93 383.12 -7.52 -45.45 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -5.83 Total: 11.25 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -1.43 Total: 5.24 kcal Atomic # 7 Polarization: -62.10 SS G_CDS: -0.12 Total: -62.22 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -1.20 Total: -24.25 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.71 Total: 18.75 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.93 -7.52 -45.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725713270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.899 kcal (2) G-P(sol) polarization free energy of solvation -37.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds