Wall clock time and date at job start Tue Mar 31 2020 18:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00404 * 2 1 4 4 O 1.42903 * 109.46747 * 134.99804 * 3 2 1 5 5 C 1.35656 * 116.99267 * 180.02562 * 4 3 2 6 6 C 1.39340 * 120.54736 * 0.27066 * 5 4 3 7 7 C 1.38300 * 118.43950 * 180.28732 * 6 5 4 8 8 C 1.38762 * 119.44667 * 359.72844 * 7 6 5 9 9 N 1.31373 * 121.06900 * 359.97438 * 8 7 6 10 10 C 1.32863 * 121.69445 * 0.02562 * 9 8 7 11 11 C 1.47832 * 119.78416 * 180.02562 * 10 9 8 12 12 O 1.21555 * 120.00134 * 186.47476 * 11 10 9 13 13 N 1.34774 * 119.99951 * 6.47107 * 11 10 9 14 14 C 1.46510 * 119.99923 * 357.28068 * 13 11 10 15 15 C 1.46500 * 120.00253 * 177.28543 * 13 11 10 16 16 C 1.53004 * 109.47270 * 89.99545 * 15 13 11 17 17 H 1.08996 * 109.46665 * 60.00276 * 16 15 13 18 18 O 1.42895 * 109.47272 * 300.00310 * 16 15 13 19 19 C 1.52995 * 109.46880 * 180.02562 * 16 15 13 20 20 N 1.46504 * 109.46820 * 185.00044 * 19 16 15 21 21 C 1.36937 * 119.99768 * 179.72469 * 20 19 16 22 22 H 1.08003 * 120.00190 * 0.27322 * 21 20 19 23 23 C 1.38813 * 119.99700 * 180.27583 * 21 20 19 24 24 N 1.31629 * 119.99723 * 180.02562 * 23 21 20 25 25 Si 1.86796 * 120.00323 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.47076 * 89.99682 * 25 23 21 27 27 H 1.48498 * 109.47119 * 209.99769 * 25 23 21 28 28 H 1.48505 * 109.47090 * 329.99959 * 25 23 21 29 29 H 1.07994 * 120.00626 * 179.97438 * 1 2 3 30 30 H 1.07999 * 119.99801 * 359.97438 * 1 2 3 31 31 H 1.07999 * 119.99528 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.47349 * 15.00120 * 3 2 1 33 33 H 1.08995 * 109.47346 * 254.99576 * 3 2 1 34 34 H 1.08000 * 120.77578 * 0.02562 * 6 5 4 35 35 H 1.08007 * 120.27191 * 179.70613 * 7 6 5 36 36 H 1.08002 * 119.46658 * 179.97438 * 8 7 6 37 37 H 1.08992 * 109.47122 * 276.12406 * 14 13 11 38 38 H 1.08996 * 109.46902 * 36.12784 * 14 13 11 39 39 H 1.09005 * 109.46593 * 156.12294 * 14 13 11 40 40 H 1.08996 * 109.46617 * 329.99744 * 15 13 11 41 41 H 1.09001 * 109.47245 * 209.99786 * 15 13 11 42 42 H 0.96700 * 114.00526 * 300.00080 * 18 16 15 43 43 H 1.09000 * 109.47355 * 65.00517 * 19 16 15 44 44 H 1.09001 * 109.47656 * 304.99784 * 19 16 15 45 45 H 0.96996 * 120.00199 * 0.02562 * 20 19 16 46 46 H 0.97002 * 119.99683 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1267 1.2410 0.9527 5 6 3.9077 2.3431 1.0788 6 6 3.6619 3.4772 0.3075 7 6 4.4890 4.5741 0.4670 8 6 5.5272 4.5178 1.3859 9 7 5.7368 3.4397 2.1068 10 6 4.9695 2.3614 1.9893 11 6 5.2431 1.1711 2.8224 12 8 4.6211 0.1434 2.6368 13 7 6.1822 1.2256 3.7876 14 6 6.9733 2.4448 3.9720 15 6 6.4120 0.0655 4.6522 16 6 7.4763 -0.8363 4.0236 17 1 8.4053 -0.2776 3.9107 18 8 7.0281 -1.2795 2.7412 19 6 7.7158 -2.0481 4.9264 20 7 8.8172 -2.8491 4.3864 21 6 9.2173 -3.9875 5.0339 22 1 8.7181 -4.2972 5.9402 23 6 10.2647 -4.7434 4.5253 24 7 10.6490 -5.8379 5.1474 25 14 11.1286 -4.2075 2.9583 26 1 12.2660 -3.3160 3.3002 27 1 11.6359 -5.4034 2.2389 28 1 10.1707 -3.4768 2.0900 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3857 2.1161 0.2660 33 1 2.4757 1.4866 -0.9926 34 1 2.8473 3.4976 -0.4013 35 1 4.3283 5.4670 -0.1191 36 1 6.1736 5.3740 1.5104 37 1 7.8126 2.4420 3.2766 38 1 6.3470 3.3165 3.7821 39 1 7.3487 2.4831 4.9946 40 1 5.4830 -0.4931 4.7651 41 1 6.7539 0.4036 5.6305 42 1 6.2040 -1.7848 2.7655 43 1 6.8113 -2.6550 4.9675 44 1 7.9716 -1.7086 5.9301 45 1 9.2658 -2.5709 3.5727 46 1 11.3811 -6.3659 4.7923 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725713270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:28 Heat of formation + Delta-G solvation = -46.353903 kcal Electronic energy + Delta-G solvation = -28993.750859 eV Core-core repulsion = 24885.287069 eV Total energy + Delta-G solvation = -4108.463790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.05878 -40.48676 -39.37972 -38.61918 -36.43587 -35.94059 -35.07570 -33.57989 -33.38612 -31.72315 -30.97545 -28.05566 -27.71969 -27.24609 -25.31777 -24.10572 -23.72339 -22.78088 -21.31103 -20.72900 -19.82296 -19.16201 -18.57482 -18.06235 -17.62582 -17.34127 -16.91102 -16.63244 -16.49806 -16.22447 -16.03216 -15.74086 -15.40135 -15.16397 -15.08832 -14.63309 -14.46626 -14.27059 -14.02983 -13.92597 -13.83990 -13.72194 -13.29535 -13.09007 -12.98171 -12.85574 -12.61055 -12.46590 -12.29639 -11.99324 -11.95391 -11.87577 -11.25480 -11.08670 -11.01659 -10.81801 -10.52214 -10.18855 -9.64766 -9.34399 -9.33473 -8.06757 -5.39609 -0.33765 0.21811 1.07813 1.34909 1.37683 1.46629 1.79743 1.98950 2.26596 2.45080 2.81703 3.15948 3.23552 3.39023 3.55560 3.63949 3.67618 3.89513 3.95072 4.01892 4.05005 4.09140 4.16378 4.25202 4.28169 4.41125 4.47165 4.49842 4.55807 4.70015 4.87917 4.88405 4.92410 4.92741 5.02716 5.17544 5.20386 5.46506 5.58053 5.62448 5.66973 5.70841 6.17495 6.21039 6.39135 6.74256 6.74694 7.03592 7.23399 7.80186 7.99048 9.14660 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013197 B = 0.002771 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.210416 B =10100.593742 C =11192.203390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.182 4.182 3 C 0.076 3.924 4 O -0.301 6.301 5 C 0.121 3.879 6 C -0.174 4.174 7 C -0.088 4.088 8 C 0.048 3.952 9 N -0.426 5.426 10 C 0.007 3.993 11 C 0.562 3.438 12 O -0.551 6.551 13 N -0.595 5.595 14 C 0.075 3.925 15 C 0.094 3.906 16 C 0.094 3.906 17 H 0.095 0.905 18 O -0.568 6.568 19 C 0.128 3.872 20 N -0.755 5.755 21 C -0.235 4.235 22 H 0.061 0.939 23 C -0.061 4.061 24 N -0.981 5.981 25 Si 0.954 3.046 26 H -0.273 1.273 27 H -0.292 1.292 28 H -0.264 1.264 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.174 0.826 35 H 0.187 0.813 36 H 0.200 0.800 37 H 0.046 0.954 38 H 0.116 0.884 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.117 0.883 42 H 0.378 0.622 43 H 0.026 0.974 44 H 0.049 0.951 45 H 0.365 0.635 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.609 31.113 -12.367 39.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.200 4.200 3 C 0.002 3.998 4 O -0.212 6.212 5 C 0.070 3.930 6 C -0.200 4.200 7 C -0.107 4.107 8 C -0.113 4.113 9 N -0.139 5.139 10 C -0.129 4.129 11 C 0.350 3.650 12 O -0.429 6.429 13 N -0.326 5.326 14 C -0.067 4.067 15 C -0.030 4.030 16 C 0.033 3.967 17 H 0.113 0.887 18 O -0.374 6.374 19 C 0.000 4.000 20 N -0.401 5.401 21 C -0.366 4.366 22 H 0.079 0.921 23 C -0.253 4.253 24 N -0.632 5.632 25 Si 0.781 3.219 26 H -0.199 1.199 27 H -0.218 1.218 28 H -0.190 1.190 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.119 0.881 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.192 0.808 35 H 0.204 0.796 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.133 0.867 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.136 0.864 42 H 0.226 0.774 43 H 0.044 0.956 44 H 0.067 0.933 45 H 0.198 0.802 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.753 30.452 -11.762 38.156 hybrid contribution -0.273 -0.879 -1.134 1.461 sum -20.026 29.573 -12.896 37.973 Atomic orbital electron populations 1.24091 0.94603 1.03894 0.96508 1.22656 0.96434 0.97505 1.03420 1.22196 0.87591 0.97779 0.92256 1.86414 1.41914 1.34523 1.58342 1.20244 0.90722 0.87891 0.94102 1.22154 1.03892 0.92325 1.01662 1.22718 0.92427 0.99190 0.96403 1.23586 0.98035 0.96551 0.93129 1.68072 1.24392 0.99383 1.22011 1.20477 0.96455 0.95189 1.00747 1.18085 0.79825 0.86852 0.80263 1.90752 1.51268 1.31813 1.69028 1.47629 1.36447 1.15543 1.33013 1.22532 0.96047 0.86705 1.01392 1.22138 0.99283 0.87424 0.94156 1.22472 0.97515 0.93218 0.83476 0.88704 1.86481 1.45771 1.75403 1.29755 1.21427 0.90250 0.91667 0.96607 1.42640 1.40145 1.27671 1.29610 1.19077 1.12133 0.99681 1.05731 0.92140 1.25457 1.00154 0.97319 1.02351 1.69877 1.32009 1.18301 1.43002 0.85417 0.78883 0.77272 0.80282 1.19914 1.21845 1.18952 0.86653 0.86222 0.88125 0.89066 0.89499 0.80843 0.79567 0.78298 0.93524 0.86659 0.90396 0.90335 0.86449 0.77391 0.95563 0.93346 0.80170 0.93207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 14.31 67.78 0.97 -0.88 16 2 C -0.18 -3.14 9.89 25.64 0.25 -2.88 16 3 C 0.08 1.18 5.17 71.23 0.37 1.55 16 4 O -0.30 -7.68 8.20 -68.81 -0.56 -8.24 16 5 C 0.12 2.70 6.71 22.94 0.15 2.85 16 6 C -0.17 -2.10 9.13 22.55 0.21 -1.89 16 7 C -0.09 -0.66 10.10 22.41 0.23 -0.43 16 8 C 0.05 0.53 11.17 84.89 0.95 1.48 16 9 N -0.43 -8.34 6.00 -184.62 -1.11 -9.45 16 10 C 0.01 0.19 6.64 41.93 0.28 0.46 16 11 C 0.56 17.85 7.20 86.78 0.62 18.48 16 12 O -0.55 -20.86 13.37 22.67 0.30 -20.56 16 13 N -0.60 -16.33 2.83 -850.20 -2.40 -18.73 16 14 C 0.07 1.55 9.39 127.77 1.20 2.75 16 15 C 0.09 2.58 5.18 86.38 0.45 3.03 16 16 C 0.09 3.20 3.27 30.59 0.10 3.30 16 17 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 18 O -0.57 -22.42 12.03 -137.76 -1.66 -24.08 16 19 C 0.13 5.15 5.90 86.38 0.51 5.66 16 20 N -0.75 -38.49 5.35 -343.44 -1.84 -40.32 16 21 C -0.24 -14.24 10.47 84.03 0.88 -13.36 16 22 H 0.06 3.93 8.06 -2.91 -0.02 3.91 16 23 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 24 N -0.98 -65.21 13.97 21.65 0.30 -64.91 16 25 Si 0.95 48.99 27.74 68.60 1.90 50.89 16 26 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.29 -14.92 7.11 99.48 0.71 -14.22 16 28 H -0.26 -13.08 6.52 99.48 0.65 -12.43 16 29 H 0.12 1.20 8.06 -2.91 -0.02 1.17 16 30 H 0.12 0.89 7.90 -2.91 -0.02 0.86 16 31 H 0.10 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.09 0.90 7.40 -2.38 -0.02 0.88 16 33 H 0.09 1.02 7.71 -2.39 -0.02 1.00 16 34 H 0.17 0.94 6.46 -2.91 -0.02 0.92 16 35 H 0.19 -0.26 8.06 -2.91 -0.02 -0.28 16 36 H 0.20 0.67 8.06 -2.91 -0.02 0.64 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.12 2.18 5.17 -4.67 -0.02 2.16 16 39 H 0.08 1.26 7.83 -2.38 -0.02 1.24 16 40 H 0.08 2.32 7.46 -2.39 -0.02 2.31 16 41 H 0.12 2.51 7.85 -2.39 -0.02 2.49 16 42 H 0.38 14.45 8.37 -74.06 -0.62 13.83 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.37 18.53 5.53 -92.71 -0.51 18.02 16 46 H 0.26 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -86.39 383.12 2.38 -84.01 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.19 Total: 34.61 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: 7.63 Total: 16.79 kcal Atomic # 7 Polarization: -128.36 SS G_CDS: -5.05 Total: -133.41 kcal Atomic # 8 Polarization: -50.96 SS G_CDS: -1.92 Total: -52.88 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.90 Total: 50.89 kcal Total: -86.39 2.38 -84.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725713270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.657 kcal (2) G-P(sol) polarization free energy of solvation -86.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds