Wall clock time and date at job start Tue Mar 31 2020 19:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35502 * 117.00050 * 2 1 4 4 C 1.39207 * 120.90089 * 0.02562 * 3 2 1 5 5 C 1.37906 * 119.39120 * 179.97438 * 4 3 2 6 6 N 1.32080 * 121.29061 * 0.02562 * 5 4 3 7 7 C 1.32186 * 121.97759 * 359.71939 * 6 5 4 8 8 O 1.35419 * 119.77735 * 180.29457 * 7 6 5 9 9 C 1.42895 * 117.00219 * 0.24374 * 8 7 6 10 10 C 1.40294 * 120.44395 * 0.54340 * 7 6 5 11 11 C 1.47226 * 120.65383 * 179.75218 * 10 7 6 12 12 O 1.21633 * 119.99762 * 269.72230 * 11 10 7 13 13 N 1.34778 * 120.00400 * 89.71717 * 11 10 7 14 14 C 1.47020 * 125.64375 * 359.96354 * 13 11 10 15 15 C 1.54325 * 107.27144 * 181.09520 * 14 13 11 16 16 C 1.55158 * 102.94065 * 22.18960 * 15 14 13 17 17 H 1.09000 * 111.03931 * 82.59013 * 16 15 14 18 18 C 1.53006 * 111.00450 * 206.42840 * 16 15 14 19 19 N 1.46504 * 109.46883 * 178.65210 * 18 16 15 20 20 C 1.36936 * 119.99477 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00404 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99891 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47326 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47231 * 119.99688 * 24 22 20 27 27 H 1.48502 * 109.47486 * 239.99534 * 24 22 20 28 28 C 1.47416 * 125.65225 * 180.02562 * 13 11 10 29 29 H 1.08996 * 109.47080 * 299.99922 * 1 2 3 30 30 H 1.09005 * 109.47002 * 60.00160 * 1 2 3 31 31 H 1.09005 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.30645 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.35159 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47356 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47334 * 300.00302 * 9 8 7 36 36 H 1.09002 * 109.47098 * 60.00331 * 9 8 7 37 37 H 1.09002 * 109.88229 * 300.50384 * 14 13 11 38 38 H 1.08998 * 109.88901 * 61.67416 * 14 13 11 39 39 H 1.08998 * 110.71905 * 263.83004 * 15 14 13 40 40 H 1.08996 * 110.72683 * 140.55198 * 15 14 13 41 41 H 1.09001 * 109.47002 * 298.64707 * 18 16 15 42 42 H 1.08993 * 109.46955 * 58.65144 * 18 16 15 43 43 H 0.96992 * 119.99966 * 359.97438 * 19 18 16 44 44 H 0.96993 * 120.00031 * 180.02562 * 23 22 20 45 45 H 1.09001 * 110.36666 * 36.99786 * 28 13 11 46 46 H 1.09006 * 110.46256 * 274.72467 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3866 0.0005 5 6 1.9627 3.5984 0.0011 6 7 3.2820 3.6625 0.0006 7 6 4.0356 2.5765 0.0050 8 8 5.3846 2.6941 0.0103 9 6 5.9204 4.0188 0.0162 10 6 3.4472 1.3029 -0.0009 11 6 4.2822 0.0903 -0.0015 12 8 4.6267 -0.4103 -1.0551 13 7 4.6648 -0.4650 1.1654 14 6 4.3221 0.0345 2.5050 15 6 4.9996 -0.8999 3.5296 16 6 6.1498 -1.5402 2.7084 17 1 7.0185 -0.8827 2.6731 18 6 6.5269 -2.9125 3.2704 19 7 7.5913 -3.4994 2.4526 20 6 8.0937 -4.7341 2.7662 21 1 7.7056 -5.2750 3.6166 22 6 9.1019 -5.2905 1.9910 23 7 9.5746 -4.6315 0.9543 24 14 9.7877 -6.9744 2.4192 25 1 9.0917 -7.5016 3.6203 26 1 9.5747 -7.9004 1.2780 27 1 11.2417 -6.8602 2.6991 28 6 5.4973 -1.6730 1.3100 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2250 2.3528 0.0014 33 1 1.3882 4.5129 0.0019 34 1 7.0093 3.9703 0.0205 35 1 5.5835 4.5509 -0.8734 36 1 5.5770 4.5456 0.9065 37 1 4.6947 1.0515 2.6280 38 1 3.2411 0.0143 2.6430 39 1 4.3022 -1.6625 3.8760 40 1 5.3965 -0.3289 4.3689 41 1 6.8768 -2.8011 4.2967 42 1 5.6537 -3.5646 3.2529 43 1 7.9396 -3.0138 1.6886 44 1 10.2788 -5.0204 0.4124 45 1 6.2633 -1.7008 0.5350 46 1 4.8791 -2.5696 1.2636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731666682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:54 Heat of formation + Delta-G solvation = -47.625308 kcal Electronic energy + Delta-G solvation = -29445.643951 eV Core-core repulsion = 25337.125029 eV Total energy + Delta-G solvation = -4108.518922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39508 -39.50747 -39.47619 -37.59229 -37.36310 -34.57506 -32.59713 -31.78533 -31.08683 -30.26065 -28.61145 -28.30986 -27.15816 -25.85294 -24.38884 -23.17669 -22.81831 -21.89626 -20.15427 -19.71329 -19.10352 -18.00374 -17.51967 -16.86269 -16.85621 -16.56571 -15.97375 -15.89512 -15.57064 -15.34743 -14.75642 -14.54772 -14.23845 -14.04805 -13.62168 -13.51583 -13.36439 -13.22814 -13.11548 -12.59216 -12.34669 -12.13293 -12.08116 -12.07921 -11.83573 -11.65525 -11.42675 -11.24356 -10.82656 -10.59912 -10.53726 -10.41340 -10.34102 -9.95405 -9.66915 -9.61040 -9.28228 -8.91127 -8.83003 -8.40339 -6.86802 -5.70023 -2.99398 0.61746 0.93503 2.32407 2.71255 3.07117 3.15166 3.36547 3.47828 3.52742 3.55560 3.96923 4.23211 4.44304 4.59759 4.64559 4.68874 4.71790 4.74974 4.85974 5.02292 5.05118 5.08185 5.10724 5.13676 5.29975 5.41637 5.42298 5.52437 5.57560 5.64499 5.71554 5.72731 5.94336 6.05103 6.11992 6.18286 6.37829 6.47330 6.55301 6.72141 6.74881 6.89589 6.89728 7.45556 7.70171 7.75489 8.32801 8.48066 9.59265 10.16852 10.51308 11.52689 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002751 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.707841 B =10174.237330 C =10799.301517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.297 6.297 3 C 0.233 3.767 4 C -0.301 4.301 5 C 0.188 3.812 6 N -0.561 5.561 7 C 0.388 3.612 8 O -0.292 6.292 9 C 0.040 3.960 10 C -0.227 4.227 11 C 0.599 3.401 12 O -0.526 6.526 13 N -0.606 5.606 14 C 0.107 3.893 15 C -0.124 4.124 16 C -0.105 4.105 17 H 0.085 0.915 18 C 0.166 3.834 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.931 5.931 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.118 3.882 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.147 0.853 33 H 0.167 0.833 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.022 0.978 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.084 0.916 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.152 20.784 1.775 29.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.206 6.206 3 C 0.178 3.822 4 C -0.322 4.322 5 C 0.033 3.967 6 N -0.288 5.288 7 C 0.209 3.791 8 O -0.197 6.197 9 C -0.055 4.055 10 C -0.234 4.234 11 C 0.386 3.614 12 O -0.402 6.402 13 N -0.339 5.339 14 C -0.017 4.017 15 C -0.162 4.162 16 C -0.124 4.124 17 H 0.103 0.897 18 C 0.038 3.962 19 N -0.378 5.378 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.579 5.579 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.004 4.004 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.126 0.874 32 H 0.165 0.835 33 H 0.184 0.816 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.040 0.960 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.252 20.740 1.213 29.013 hybrid contribution -0.230 -1.082 -0.061 1.108 sum -20.482 19.658 1.152 28.413 Atomic orbital electron populations 1.23248 0.76912 1.04960 1.01842 1.86120 1.22459 1.25591 1.86448 1.18845 0.89802 0.85242 0.88326 1.21968 1.01748 0.92412 1.16116 1.22271 0.88470 0.97295 0.88705 1.67445 1.07957 1.30279 1.23134 1.19345 0.84652 0.87373 0.87777 1.86298 1.15135 1.32021 1.86282 1.22974 0.98979 0.80925 1.02580 1.18927 0.91331 0.93534 1.19584 1.16975 0.79300 0.82331 0.82830 1.90831 1.55839 1.62985 1.30500 1.48413 1.51689 1.28763 1.05048 1.21957 0.99303 0.98046 0.82373 1.22639 0.97829 0.98586 0.97143 1.22582 0.97187 0.98964 0.93710 0.89676 1.20583 0.91875 0.89609 0.94175 1.42383 1.41902 1.19767 1.33714 1.19251 1.14344 0.93861 1.09660 0.91135 1.24759 0.99588 0.98748 0.97913 1.69677 1.30942 1.38172 1.19122 0.86123 0.78604 0.84102 0.77385 1.20599 1.21896 1.21917 1.22320 0.93842 0.86100 0.98122 0.91938 0.91937 0.87405 0.83509 0.81621 0.88077 0.91936 0.91941 0.91979 0.92053 0.90289 0.90036 0.95830 0.96047 0.78146 0.93539 0.89757 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.15 16 2 O -0.30 -3.48 10.03 -18.20 -0.18 -3.66 16 3 C 0.23 2.77 6.74 -38.32 -0.26 2.51 16 4 C -0.30 -2.46 9.09 -39.34 -0.36 -2.81 16 5 C 0.19 1.53 11.15 -17.57 -0.20 1.33 16 6 N -0.56 -6.26 9.20 -13.06 -0.12 -6.38 16 7 C 0.39 5.30 7.51 -16.63 -0.12 5.18 16 8 O -0.29 -4.11 9.93 -17.95 -0.18 -4.29 16 9 C 0.04 0.39 10.38 101.05 1.05 1.43 16 10 C -0.23 -3.36 4.84 -104.57 -0.51 -3.87 16 11 C 0.60 10.97 6.45 -12.61 -0.08 10.88 16 12 O -0.53 -11.83 17.36 5.25 0.09 -11.74 16 13 N -0.61 -10.08 3.33 -171.88 -0.57 -10.65 16 14 C 0.11 1.36 6.47 -3.06 -0.02 1.34 16 15 C -0.12 -1.54 6.42 -24.90 -0.16 -1.70 16 16 C -0.10 -1.74 3.10 -88.48 -0.27 -2.02 16 17 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 18 C 0.17 3.32 5.71 -4.04 -0.02 3.29 16 19 N -0.73 -18.94 5.45 -59.90 -0.33 -19.26 16 20 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 21 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.98 13.06 55.49 0.72 -28.25 16 24 Si 0.91 22.88 29.55 -169.99 -5.02 17.85 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 28 C 0.12 2.16 6.08 -2.55 -0.02 2.14 16 29 H 0.06 0.26 7.70 -51.93 -0.40 -0.14 16 30 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 31 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.15 0.69 6.45 -52.48 -0.34 0.36 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.06 0.52 8.11 -51.93 -0.42 0.10 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.43 8.10 -51.93 -0.42 0.01 16 43 H 0.38 10.57 7.53 -40.82 -0.31 10.26 16 44 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 45 H 0.08 1.79 8.04 -51.93 -0.42 1.37 16 46 H 0.07 1.37 8.00 -51.93 -0.42 0.96 16 LS Contribution 387.48 15.07 5.84 5.84 Total: -1.00 -37.55 387.48 -6.86 -44.41 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -6.89 Total: 4.76 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: -0.22 Total: 11.37 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.29 Total: -64.54 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.27 Total: -19.68 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.55 -6.86 -44.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731666682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.219 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds