Wall clock time and date at job start Tue Mar 31 2020 19:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35502 * 117.00050 * 2 1 4 4 C 1.39207 * 120.90089 * 0.02562 * 3 2 1 5 5 C 1.37906 * 119.39120 * 179.97438 * 4 3 2 6 6 N 1.32080 * 121.29061 * 0.02562 * 5 4 3 7 7 C 1.32186 * 121.97759 * 359.71939 * 6 5 4 8 8 O 1.35419 * 119.77735 * 180.29457 * 7 6 5 9 9 C 1.42895 * 117.00219 * 0.24374 * 8 7 6 10 10 C 1.40294 * 120.44395 * 0.54340 * 7 6 5 11 11 C 1.47226 * 120.65383 * 179.75218 * 10 7 6 12 12 O 1.21633 * 119.99762 * 269.72230 * 11 10 7 13 13 N 1.34778 * 120.00400 * 89.71717 * 11 10 7 14 14 C 1.47020 * 125.64375 * 359.96354 * 13 11 10 15 15 C 1.54325 * 107.27144 * 181.09520 * 14 13 11 16 16 C 1.55158 * 102.94065 * 22.18960 * 15 14 13 17 17 H 1.09000 * 111.03931 * 82.59013 * 16 15 14 18 18 C 1.53006 * 111.00450 * 206.42840 * 16 15 14 19 19 N 1.46504 * 109.46883 * 178.65210 * 18 16 15 20 20 C 1.36936 * 119.99477 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00404 * 359.97438 * 20 19 18 22 22 C 1.38814 * 119.99891 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00093 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47326 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47231 * 119.99688 * 24 22 20 27 27 H 1.48502 * 109.47486 * 239.99534 * 24 22 20 28 28 C 1.47416 * 125.65225 * 180.02562 * 13 11 10 29 29 H 1.08996 * 109.47080 * 299.99922 * 1 2 3 30 30 H 1.09005 * 109.47002 * 60.00160 * 1 2 3 31 31 H 1.09005 * 109.47286 * 180.02562 * 1 2 3 32 32 H 1.08003 * 120.30645 * 0.02562 * 4 3 2 33 33 H 1.08000 * 119.35159 * 180.02562 * 5 4 3 34 34 H 1.09001 * 109.47356 * 179.97438 * 9 8 7 35 35 H 1.08999 * 109.47334 * 300.00302 * 9 8 7 36 36 H 1.09002 * 109.47098 * 60.00331 * 9 8 7 37 37 H 1.09002 * 109.88229 * 300.50384 * 14 13 11 38 38 H 1.08998 * 109.88901 * 61.67416 * 14 13 11 39 39 H 1.08998 * 110.71905 * 263.83004 * 15 14 13 40 40 H 1.08996 * 110.72683 * 140.55198 * 15 14 13 41 41 H 1.09001 * 109.47002 * 298.64707 * 18 16 15 42 42 H 1.08993 * 109.46955 * 58.65144 * 18 16 15 43 43 H 0.96992 * 119.99966 * 359.97438 * 19 18 16 44 44 H 0.96993 * 120.00031 * 180.02562 * 23 22 20 45 45 H 1.09001 * 110.36666 * 36.99786 * 28 13 11 46 46 H 1.09006 * 110.46256 * 274.72467 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 1.3045 2.3866 0.0005 5 6 1.9627 3.5984 0.0011 6 7 3.2820 3.6625 0.0006 7 6 4.0356 2.5765 0.0050 8 8 5.3846 2.6941 0.0103 9 6 5.9204 4.0188 0.0162 10 6 3.4472 1.3029 -0.0009 11 6 4.2822 0.0903 -0.0015 12 8 4.6267 -0.4103 -1.0551 13 7 4.6648 -0.4650 1.1654 14 6 4.3221 0.0345 2.5050 15 6 4.9996 -0.8999 3.5296 16 6 6.1498 -1.5402 2.7084 17 1 7.0185 -0.8827 2.6731 18 6 6.5269 -2.9125 3.2704 19 7 7.5913 -3.4994 2.4526 20 6 8.0937 -4.7341 2.7662 21 1 7.7056 -5.2750 3.6166 22 6 9.1019 -5.2905 1.9910 23 7 9.5746 -4.6315 0.9543 24 14 9.7877 -6.9744 2.4192 25 1 9.0917 -7.5016 3.6203 26 1 9.5747 -7.9004 1.2780 27 1 11.2417 -6.8602 2.6991 28 6 5.4973 -1.6730 1.3100 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2250 2.3528 0.0014 33 1 1.3882 4.5129 0.0019 34 1 7.0093 3.9703 0.0205 35 1 5.5835 4.5509 -0.8734 36 1 5.5770 4.5456 0.9065 37 1 4.6947 1.0515 2.6280 38 1 3.2411 0.0143 2.6430 39 1 4.3022 -1.6625 3.8760 40 1 5.3965 -0.3289 4.3689 41 1 6.8768 -2.8011 4.2967 42 1 5.6537 -3.5646 3.2529 43 1 7.9396 -3.0138 1.6886 44 1 10.2788 -5.0204 0.4124 45 1 6.2633 -1.7008 0.5350 46 1 4.8791 -2.5696 1.2636 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731666682.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:53 Heat of formation + Delta-G solvation = -77.567231 kcal Electronic energy + Delta-G solvation = -29446.942330 eV Core-core repulsion = 25337.125029 eV Total energy + Delta-G solvation = -4109.817302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.28042 -40.77101 -40.28520 -38.80700 -38.38768 -36.44442 -34.09348 -33.07449 -32.00416 -31.69716 -30.06198 -28.91747 -27.91136 -27.33463 -25.80702 -24.60925 -23.59309 -23.37922 -21.48826 -20.96256 -19.95473 -19.20826 -18.83936 -18.42272 -17.70445 -17.60174 -17.11180 -16.76738 -16.68760 -16.46630 -16.13903 -15.82036 -15.30889 -15.23566 -15.11821 -14.87379 -14.61834 -14.30962 -14.20172 -13.88447 -13.73092 -13.52022 -13.14438 -13.02257 -12.83253 -12.77677 -12.63763 -12.47931 -12.24525 -12.18287 -12.14075 -11.89207 -11.66062 -11.62882 -11.47417 -10.96077 -10.74715 -10.10436 -9.78033 -9.73453 -9.00413 -7.94203 -5.24133 -0.18618 0.14366 1.38169 1.46611 1.48562 1.58557 1.59443 1.87161 2.40178 2.55212 2.56150 3.18259 3.35693 3.40206 3.56492 3.60448 3.76582 3.83812 3.92782 4.09379 4.19562 4.22141 4.29827 4.35803 4.37038 4.39876 4.40733 4.53538 4.56126 4.61755 4.69856 4.74477 4.77270 4.83081 4.87131 4.96709 5.03703 5.11467 5.15858 5.22484 5.39285 5.50313 6.04283 6.09185 6.27030 6.39255 6.69323 6.97001 7.32750 8.08805 8.30774 9.29846 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002751 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.707841 B =10174.237330 C =10799.301517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.330 6.330 3 C 0.227 3.773 4 C -0.283 4.283 5 C 0.195 3.805 6 N -0.565 5.565 7 C 0.377 3.623 8 O -0.326 6.326 9 C 0.037 3.963 10 C -0.264 4.264 11 C 0.595 3.405 12 O -0.589 6.589 13 N -0.605 5.605 14 C 0.107 3.893 15 C -0.107 4.107 16 C -0.095 4.095 17 H 0.076 0.924 18 C 0.165 3.835 19 N -0.750 5.750 20 C -0.242 4.242 21 H 0.082 0.918 22 C -0.082 4.082 23 N -0.973 5.973 24 Si 0.977 3.023 25 H -0.261 1.261 26 H -0.297 1.297 27 H -0.293 1.293 28 C 0.121 3.879 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.189 0.811 33 H 0.215 0.785 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.112 0.888 41 H 0.039 0.961 42 H 0.027 0.973 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.040 0.960 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.313 22.583 4.198 33.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.240 6.240 3 C 0.172 3.828 4 C -0.303 4.303 5 C 0.041 3.959 6 N -0.293 5.293 7 C 0.198 3.802 8 O -0.232 6.232 9 C -0.057 4.057 10 C -0.271 4.271 11 C 0.384 3.616 12 O -0.470 6.470 13 N -0.337 5.337 14 C -0.015 4.015 15 C -0.145 4.145 16 C -0.114 4.114 17 H 0.095 0.905 18 C 0.039 3.961 19 N -0.392 5.392 20 C -0.374 4.374 21 H 0.099 0.901 22 C -0.273 4.273 23 N -0.624 5.624 24 Si 0.806 3.194 25 H -0.185 1.185 26 H -0.224 1.224 27 H -0.220 1.220 28 C -0.002 4.002 29 H 0.107 0.893 30 H 0.097 0.903 31 H 0.132 0.868 32 H 0.207 0.793 33 H 0.231 0.769 34 H 0.130 0.870 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.131 0.869 41 H 0.057 0.943 42 H 0.045 0.955 43 H 0.202 0.798 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.476 22.565 3.724 32.774 hybrid contribution 0.596 -1.572 -0.805 1.864 sum -22.880 20.993 2.919 31.188 Atomic orbital electron populations 1.23614 0.74185 1.06253 1.03906 1.86086 1.25386 1.26193 1.86344 1.19052 0.88937 0.86621 0.88204 1.22383 1.03511 0.90678 1.13766 1.23163 0.87576 0.99181 0.86026 1.67563 1.09358 1.28888 1.23488 1.19405 0.84706 0.87605 0.88488 1.86249 1.16074 1.34322 1.86540 1.23168 0.99580 0.79570 1.03339 1.18858 0.92467 0.92132 1.23599 1.17678 0.78804 0.83013 0.82143 1.90769 1.58387 1.65152 1.32703 1.48529 1.50726 1.27899 1.06542 1.22180 1.00751 0.98495 0.80058 1.22660 0.95968 0.98800 0.97103 1.22404 0.98407 0.97390 0.93222 0.90537 1.20763 0.90331 0.91015 0.94009 1.42662 1.43152 1.19376 1.34033 1.19718 1.13672 0.94676 1.09293 0.90054 1.25659 1.00637 1.02823 0.98218 1.69861 1.31837 1.40082 1.20635 0.85020 0.77641 0.79332 0.77443 1.18526 1.22398 1.22001 1.22083 0.93029 0.86930 0.98138 0.89292 0.90265 0.86763 0.79341 0.76873 0.87007 0.91564 0.90659 0.90846 0.89871 0.88756 0.86922 0.94320 0.95471 0.79778 0.94141 0.94153 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.84 113.37 1.12 1.24 16 2 O -0.33 -7.40 10.03 -88.03 -0.88 -8.28 16 3 C 0.23 5.09 6.74 23.09 0.16 5.24 16 4 C -0.28 -3.52 9.09 22.42 0.20 -3.31 16 5 C 0.19 2.37 11.15 84.58 0.94 3.32 16 6 N -0.56 -11.43 9.20 -308.27 -2.84 -14.26 16 7 C 0.38 10.27 7.51 85.14 0.64 10.91 16 8 O -0.33 -9.50 9.93 -87.14 -0.87 -10.37 16 9 C 0.04 0.71 10.38 113.37 1.18 1.89 16 10 C -0.26 -7.93 4.84 -19.83 -0.10 -8.03 16 11 C 0.59 23.17 6.45 86.61 0.56 23.73 16 12 O -0.59 -29.05 17.36 -4.13 -0.07 -29.12 16 13 N -0.61 -21.00 3.33 -815.93 -2.71 -23.71 16 14 C 0.11 2.59 6.47 86.73 0.56 3.15 16 15 C -0.11 -2.41 6.42 31.78 0.20 -2.21 16 16 C -0.09 -3.17 3.10 -9.41 -0.03 -3.20 16 17 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 18 C 0.17 6.58 5.71 86.38 0.49 7.07 16 19 N -0.75 -39.77 5.45 -343.43 -1.87 -41.64 16 20 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 23 N -0.97 -62.85 13.06 21.65 0.28 -62.57 16 24 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 28 C 0.12 4.75 6.08 86.85 0.53 5.27 16 29 H 0.09 0.37 7.70 -2.39 -0.02 0.35 16 30 H 0.08 0.48 7.71 -2.38 -0.02 0.46 16 31 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.19 0.68 6.45 -2.91 -0.02 0.66 16 33 H 0.21 0.49 8.06 -2.91 -0.02 0.46 16 34 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 36 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 40 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.03 1.07 8.10 -2.39 -0.02 1.05 16 43 H 0.37 21.50 7.53 -92.71 -0.70 20.80 16 44 H 0.25 15.62 8.31 -92.71 -0.77 14.84 16 45 H 0.04 1.91 8.04 -2.39 -0.02 1.89 16 46 H 0.06 2.46 8.00 -2.38 -0.02 2.44 16 Total: -1.00 -88.70 387.48 1.13 -87.58 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: 0.30 Total: 25.02 kcal Atomic # 6 Polarization: 19.84 SS G_CDS: 7.76 Total: 27.60 kcal Atomic # 7 Polarization: -135.05 SS G_CDS: -7.14 Total: -142.19 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: -1.82 Total: -47.77 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -88.70 1.13 -87.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731666682.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.009 kcal (2) G-P(sol) polarization free energy of solvation -88.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds