Wall clock time and date at job start Tue Mar 31 2020 18:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 N 1.46499 * 109.47198 * 179.97438 * 6 5 3 8 8 C 1.34777 * 120.00065 * 180.02562 * 7 6 5 9 9 O 1.21703 * 119.99852 * 359.97438 * 8 7 6 10 10 C 1.46651 * 119.99978 * 180.02562 * 8 7 6 11 11 C 1.36549 * 125.98349 * 179.71443 * 10 8 7 12 12 C 1.40366 * 106.70510 * 179.85172 * 11 10 8 13 13 C 1.35132 * 107.11357 * 0.40945 * 12 11 10 14 14 O 1.33923 * 108.76805 * 359.74444 * 13 12 11 15 15 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 16 16 H 1.09004 * 110.64606 * 181.68960 * 15 2 1 17 17 C 1.55158 * 110.71937 * 305.02762 * 15 2 1 18 18 C 1.54910 * 101.58421 * 153.86406 * 17 15 2 19 19 N 1.47422 * 104.82876 * 322.98993 * 18 17 15 20 20 C 1.36944 * 125.64791 * 204.08892 * 19 18 17 21 21 H 1.07997 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38815 * 119.99962 * 0.04981 * 20 19 18 23 23 N 1.31617 * 119.99760 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99799 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47170 * 89.99892 * 24 22 20 26 26 H 1.48503 * 109.46729 * 209.99271 * 24 22 20 27 27 H 1.48492 * 109.47356 * 329.99515 * 24 22 20 28 28 C 1.47019 * 108.70627 * 24.12832 * 19 18 17 29 29 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 30 30 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 34 34 H 1.09000 * 109.46887 * 300.00372 * 6 5 3 35 35 H 1.08998 * 109.46846 * 59.99549 * 6 5 3 36 36 H 0.97000 * 119.99795 * 359.97438 * 7 6 5 37 37 H 1.07996 * 126.64816 * 359.95852 * 11 10 8 38 38 H 1.07997 * 126.44226 * 180.15319 * 12 11 10 39 39 H 1.08005 * 125.61648 * 179.70680 * 13 12 11 40 40 H 1.09003 * 111.00608 * 271.93869 * 17 15 2 41 41 H 1.08998 * 111.00602 * 35.78733 * 17 15 2 42 42 H 1.09005 * 110.36789 * 204.15164 * 18 17 15 43 43 H 1.09003 * 110.46136 * 81.87710 * 18 17 15 44 44 H 0.97003 * 119.99967 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.88419 * 239.52609 * 28 19 18 46 46 H 1.09004 * 109.88604 * 118.35702 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 7 1.6472 4.9039 -0.0188 8 6 2.3211 6.0711 -0.0251 9 8 3.5381 6.0711 -0.0247 10 6 1.5878 7.3411 -0.0313 11 6 2.1436 8.5884 -0.0325 12 6 1.0798 9.5041 -0.0426 13 6 -0.0641 8.7847 -0.0378 14 8 0.2461 7.4820 -0.0311 15 6 2.1975 -1.2687 0.0006 16 1 3.2726 -1.0917 0.0306 17 6 1.7506 -2.1600 1.1893 18 6 2.0637 -3.5780 0.6498 19 7 1.7323 -3.5173 -0.7854 20 6 1.4003 -4.5867 -1.5738 21 1 1.1738 -4.4372 -2.6191 22 6 1.3546 -5.8628 -1.0292 23 7 1.6308 -6.0449 0.2447 24 14 0.9011 -7.3213 -2.1045 25 1 2.1315 -7.8925 -2.7087 26 1 0.2295 -8.3560 -1.2775 27 1 -0.0183 -6.8752 -3.1819 28 6 1.8182 -2.1187 -1.2304 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7588 2.5257 -0.8967 33 1 0.7587 2.5344 0.8833 34 1 3.0064 3.5817 0.8782 35 1 3.0064 3.5730 -0.9017 36 1 0.6772 4.9039 -0.0195 37 1 3.1974 8.8246 -0.0284 38 1 1.1604 10.5810 -0.0484 39 1 -1.0640 9.1932 -0.0386 40 1 2.3371 -1.9434 2.0822 41 1 0.6849 -2.0434 1.3862 42 1 1.4429 -4.3204 1.1515 43 1 3.1194 -3.8130 0.7859 44 1 1.5992 -6.9366 0.6252 45 1 0.8540 -1.7944 -1.6219 46 1 2.5848 -2.0206 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732173447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:08 Heat of formation + Delta-G solvation = -17.124715 kcal Electronic energy + Delta-G solvation = -27932.350543 eV Core-core repulsion = 23825.154226 eV Total energy + Delta-G solvation = -4107.196317 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.11985 -40.20029 -39.58360 -37.46856 -35.56493 -34.84810 -33.53603 -32.34970 -31.50402 -30.04900 -29.18237 -27.64004 -26.63321 -25.17759 -24.21449 -22.81046 -22.15828 -20.92339 -20.36528 -20.24739 -19.06763 -18.55885 -17.39817 -17.01482 -16.83786 -16.73004 -16.16752 -16.03906 -15.52936 -15.02870 -14.70842 -14.52616 -14.14201 -13.85681 -13.72866 -13.48276 -13.45978 -13.13365 -12.99852 -12.89670 -12.60439 -12.26324 -12.04060 -11.81582 -11.77708 -11.54672 -11.06558 -10.87328 -10.83532 -10.71404 -10.53091 -10.45202 -10.14011 -9.85643 -9.70016 -9.56885 -9.56146 -9.11686 -8.68877 -8.40911 -6.87925 -5.68677 -3.11061 0.62696 1.90196 2.20085 2.64431 2.68882 2.81135 3.20656 3.38247 3.43332 3.44980 4.19200 4.41493 4.44041 4.46674 4.56997 4.61198 4.74739 5.03258 5.16378 5.22199 5.30866 5.34714 5.40011 5.42213 5.50873 5.53291 5.61277 5.69275 5.71730 5.72394 5.84647 5.89642 5.94809 6.18290 6.33703 6.34382 6.52640 6.53718 6.66662 6.93097 7.04341 7.45558 7.53484 7.59155 7.69423 7.80765 8.22078 8.31912 9.18044 9.78659 10.42708 11.35046 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035872 B = 0.001720 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.370585 B =16273.302739 C =16524.864606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.599 5.599 3 C 0.516 3.484 4 O -0.540 6.540 5 C -0.152 4.152 6 C 0.133 3.867 7 N -0.720 5.720 8 C 0.602 3.398 9 O -0.514 6.514 10 C -0.079 4.079 11 C -0.120 4.120 12 C -0.225 4.225 13 C -0.007 4.007 14 O -0.165 6.165 15 C 0.125 3.875 16 H 0.104 0.896 17 C -0.153 4.153 18 C 0.153 3.847 19 N -0.602 5.602 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.922 5.922 24 Si 0.916 3.084 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 C 0.130 3.870 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.405 0.595 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.211 0.789 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.015 0.985 44 H 0.253 0.747 45 H 0.027 0.973 46 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.986 28.741 2.032 29.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C 0.303 3.697 4 O -0.418 6.418 5 C -0.192 4.192 6 C 0.010 3.990 7 N -0.372 5.372 8 C 0.388 3.612 9 O -0.391 6.391 10 C -0.131 4.131 11 C -0.140 4.140 12 C -0.244 4.244 13 C -0.077 4.077 14 O -0.060 6.060 15 C 0.022 3.978 16 H 0.122 0.878 17 C -0.192 4.192 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.206 4.206 23 N -0.570 5.570 24 Si 0.746 3.254 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.003 3.997 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.239 0.761 37 H 0.179 0.821 38 H 0.175 0.825 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.127 0.873 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.045 0.955 46 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.684 28.196 2.042 29.049 hybrid contribution -0.808 -0.501 -0.602 1.126 sum -7.492 27.695 1.439 28.727 Atomic orbital electron populations 1.21823 0.79689 1.03324 1.02139 1.47851 1.07047 1.05980 1.72266 1.20199 0.87914 0.84988 0.76614 1.90734 1.13784 1.87269 1.49982 1.21836 0.99572 0.92739 1.05092 1.21155 0.93623 0.79580 1.04659 1.45878 1.10700 1.05710 1.74884 1.16504 0.86316 0.81252 0.77138 1.90933 1.11899 1.86191 1.50057 1.22102 0.80572 0.96223 1.14217 1.22026 1.01393 0.90465 1.00142 1.21899 0.91819 1.01384 1.09325 1.24442 1.00835 0.79796 1.02577 1.84052 1.23399 1.28037 1.70549 1.22283 0.97193 0.81250 0.97099 0.87790 1.23396 1.00600 0.98769 0.96427 1.21944 0.98979 0.91789 0.84526 1.44438 1.81035 1.00741 1.06675 1.19070 1.38935 0.84990 0.92122 0.90468 1.24794 1.01977 0.97412 0.96425 1.69781 1.55444 1.20842 1.10976 0.86057 0.77993 0.82279 0.79059 1.21590 1.21630 1.20714 1.21506 0.97925 0.86283 0.93963 0.92350 0.89931 0.91444 0.88104 0.88138 0.89934 0.89924 0.76052 0.82128 0.82507 0.77239 0.92019 0.91627 0.87266 0.96676 0.93664 0.95501 0.95756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 9.13 59.84 0.55 1.33 16 2 N -0.60 -8.56 2.88 -171.84 -0.50 -9.06 16 3 C 0.52 7.18 7.67 -10.98 -0.08 7.09 16 4 O -0.54 -9.75 15.35 5.55 0.09 -9.67 16 5 C -0.15 -1.33 4.37 -27.88 -0.12 -1.45 16 6 C 0.13 1.38 4.96 -4.04 -0.02 1.36 16 7 N -0.72 -6.27 5.55 -61.62 -0.34 -6.61 16 8 C 0.60 6.68 7.79 -12.86 -0.10 6.58 16 9 O -0.51 -7.61 16.87 5.19 0.09 -7.52 16 10 C -0.08 -0.73 7.13 -36.80 -0.26 -0.99 16 11 C -0.12 -0.99 10.62 -39.39 -0.42 -1.41 16 12 C -0.23 -1.29 10.88 -39.89 -0.43 -1.72 16 13 C -0.01 -0.03 12.08 29.63 0.36 0.33 16 14 O -0.17 -1.20 10.40 5.03 0.05 -1.15 16 15 C 0.12 2.27 3.36 -66.10 -0.22 2.05 16 16 H 0.10 2.07 6.99 -51.93 -0.36 1.71 16 17 C -0.15 -2.84 6.61 -24.58 -0.16 -3.01 16 18 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 19 N -0.60 -15.26 3.39 -170.07 -0.58 -15.84 16 20 C -0.22 -6.15 10.27 -15.05 -0.15 -6.30 16 21 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 23 N -0.92 -26.51 10.09 55.49 0.56 -25.95 16 24 Si 0.92 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 C 0.13 2.73 6.88 -3.07 -0.02 2.71 16 29 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 30 H 0.08 1.00 6.07 -51.93 -0.32 0.68 16 31 H 0.07 0.48 6.45 -51.93 -0.33 0.15 16 32 H 0.10 0.67 8.11 -51.92 -0.42 0.25 16 33 H 0.10 0.64 7.41 -51.93 -0.38 0.26 16 34 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 35 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.40 2.37 8.23 -40.82 -0.34 2.04 16 37 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.16 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.21 0.14 8.06 -52.48 -0.42 -0.29 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.07 1.14 6.09 -51.93 -0.32 0.83 16 42 H 0.11 2.91 5.87 -51.93 -0.31 2.61 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.03 0.54 6.94 -51.93 -0.36 0.18 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 379.51 15.07 5.72 5.72 Total: -1.00 -35.22 379.51 -7.61 -42.84 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -6.47 Total: 0.59 kcal Atomic # 6 Polarization: 11.04 SS G_CDS: -1.21 Total: 9.84 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.85 Total: -57.46 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: 0.23 Total: -18.33 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.22 -7.61 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732173447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.712 kcal (2) G-P(sol) polarization free energy of solvation -35.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds