Wall clock time and date at job start Tue Mar 31 2020 18:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 N 1.46499 * 109.47198 * 179.97438 * 6 5 3 8 8 C 1.34777 * 120.00065 * 180.02562 * 7 6 5 9 9 O 1.21703 * 119.99852 * 359.97438 * 8 7 6 10 10 C 1.46651 * 119.99978 * 180.02562 * 8 7 6 11 11 C 1.36549 * 125.98349 * 179.71443 * 10 8 7 12 12 C 1.40366 * 106.70510 * 179.85172 * 11 10 8 13 13 C 1.35132 * 107.11357 * 0.40945 * 12 11 10 14 14 O 1.33923 * 108.76805 * 359.74444 * 13 12 11 15 15 C 1.46497 * 120.00129 * 179.97438 * 2 1 3 16 16 H 1.09004 * 110.64606 * 181.68960 * 15 2 1 17 17 C 1.55158 * 110.71937 * 305.02762 * 15 2 1 18 18 C 1.54910 * 101.58421 * 153.86406 * 17 15 2 19 19 N 1.47422 * 104.82876 * 322.98993 * 18 17 15 20 20 C 1.36944 * 125.64791 * 204.08892 * 19 18 17 21 21 H 1.07997 * 119.99693 * 180.02562 * 20 19 18 22 22 C 1.38815 * 119.99962 * 0.04981 * 20 19 18 23 23 N 1.31617 * 119.99760 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99799 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47170 * 89.99892 * 24 22 20 26 26 H 1.48503 * 109.46729 * 209.99271 * 24 22 20 27 27 H 1.48492 * 109.47356 * 329.99515 * 24 22 20 28 28 C 1.47019 * 108.70627 * 24.12832 * 19 18 17 29 29 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 30 30 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 31 31 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 32 32 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 33 33 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 34 34 H 1.09000 * 109.46887 * 300.00372 * 6 5 3 35 35 H 1.08998 * 109.46846 * 59.99549 * 6 5 3 36 36 H 0.97000 * 119.99795 * 359.97438 * 7 6 5 37 37 H 1.07996 * 126.64816 * 359.95852 * 11 10 8 38 38 H 1.07997 * 126.44226 * 180.15319 * 12 11 10 39 39 H 1.08005 * 125.61648 * 179.70680 * 13 12 11 40 40 H 1.09003 * 111.00608 * 271.93869 * 17 15 2 41 41 H 1.08998 * 111.00602 * 35.78733 * 17 15 2 42 42 H 1.09005 * 110.36789 * 204.15164 * 18 17 15 43 43 H 1.09003 * 110.46136 * 81.87710 * 18 17 15 44 44 H 0.97003 * 119.99967 * 180.02562 * 23 22 20 45 45 H 1.09000 * 109.88419 * 239.52609 * 28 19 18 46 46 H 1.09004 * 109.88604 * 118.35702 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 7 1.6472 4.9039 -0.0188 8 6 2.3211 6.0711 -0.0251 9 8 3.5381 6.0711 -0.0247 10 6 1.5878 7.3411 -0.0313 11 6 2.1436 8.5884 -0.0325 12 6 1.0798 9.5041 -0.0426 13 6 -0.0641 8.7847 -0.0378 14 8 0.2461 7.4820 -0.0311 15 6 2.1975 -1.2687 0.0006 16 1 3.2726 -1.0917 0.0306 17 6 1.7506 -2.1600 1.1893 18 6 2.0637 -3.5780 0.6498 19 7 1.7323 -3.5173 -0.7854 20 6 1.4003 -4.5867 -1.5738 21 1 1.1738 -4.4372 -2.6191 22 6 1.3546 -5.8628 -1.0292 23 7 1.6308 -6.0449 0.2447 24 14 0.9011 -7.3213 -2.1045 25 1 2.1315 -7.8925 -2.7087 26 1 0.2295 -8.3560 -1.2775 27 1 -0.0183 -6.8752 -3.1819 28 6 1.8182 -2.1187 -1.2304 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7588 2.5257 -0.8967 33 1 0.7587 2.5344 0.8833 34 1 3.0064 3.5817 0.8782 35 1 3.0064 3.5730 -0.9017 36 1 0.6772 4.9039 -0.0195 37 1 3.1974 8.8246 -0.0284 38 1 1.1604 10.5810 -0.0484 39 1 -1.0640 9.1932 -0.0386 40 1 2.3371 -1.9434 2.0822 41 1 0.6849 -2.0434 1.3862 42 1 1.4429 -4.3204 1.1515 43 1 3.1194 -3.8130 0.7859 44 1 1.5992 -6.9366 0.6252 45 1 0.8540 -1.7944 -1.6219 46 1 2.5848 -2.0206 -1.9990 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732173447.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:07 Heat of formation + Delta-G solvation = -42.755684 kcal Electronic energy + Delta-G solvation = -27933.461985 eV Core-core repulsion = 23825.154226 eV Total energy + Delta-G solvation = -4108.307760 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.62695 -41.31358 -40.52200 -39.03311 -36.47735 -36.25714 -34.14774 -34.01999 -32.48087 -31.15277 -30.53031 -29.14370 -27.72227 -26.66324 -25.50374 -23.58967 -22.67025 -22.14493 -21.90902 -21.36957 -20.06160 -19.43210 -18.96424 -18.47643 -17.48157 -17.44159 -17.08161 -16.98859 -16.70734 -16.52327 -15.99711 -15.85439 -15.33084 -15.17937 -14.76002 -14.45462 -14.29906 -14.06266 -13.92979 -13.89453 -13.66171 -13.54766 -13.44702 -13.23482 -12.98789 -12.76460 -12.70602 -12.57646 -12.32837 -12.12769 -12.01424 -11.83093 -11.62305 -11.38321 -11.04473 -10.89398 -10.75615 -10.38907 -9.65102 -9.63014 -8.92688 -7.78631 -5.24434 0.01591 1.43687 1.47101 1.49375 1.53459 1.57994 1.58216 1.88621 2.06369 2.28512 2.50306 3.31660 3.47707 3.65994 3.75924 3.78164 3.89758 3.96288 3.99631 4.03064 4.14378 4.23645 4.29406 4.47090 4.56828 4.62379 4.67045 4.70572 4.82577 4.84827 4.87235 4.93371 4.97507 4.97643 5.06268 5.10641 5.17047 5.40159 5.44673 5.54116 5.58769 5.76710 5.82552 6.27803 6.36391 6.44493 6.95563 7.08231 7.13465 7.74395 8.38004 9.23020 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.035872 B = 0.001720 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.370585 B =16273.302739 C =16524.864606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.599 5.599 3 C 0.511 3.489 4 O -0.590 6.590 5 C -0.133 4.133 6 C 0.139 3.861 7 N -0.702 5.702 8 C 0.599 3.401 9 O -0.565 6.565 10 C -0.108 4.108 11 C -0.128 4.128 12 C -0.237 4.237 13 C 0.016 3.984 14 O -0.166 6.166 15 C 0.139 3.861 16 H 0.081 0.919 17 C -0.132 4.132 18 C 0.155 3.845 19 N -0.622 5.622 20 C -0.241 4.241 21 H 0.081 0.919 22 C -0.065 4.065 23 N -0.948 5.948 24 Si 0.982 3.018 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.267 1.267 28 C 0.131 3.869 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.422 0.578 37 H 0.154 0.846 38 H 0.181 0.819 39 H 0.257 0.743 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.082 0.918 43 H -0.018 1.018 44 H 0.248 0.752 45 H 0.045 0.955 46 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.632 31.207 1.742 33.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.330 5.330 3 C 0.301 3.699 4 O -0.471 6.471 5 C -0.173 4.173 6 C 0.014 3.986 7 N -0.354 5.354 8 C 0.386 3.614 9 O -0.446 6.446 10 C -0.160 4.160 11 C -0.149 4.149 12 C -0.256 4.256 13 C -0.054 4.054 14 O -0.061 6.061 15 C 0.034 3.966 16 H 0.099 0.901 17 C -0.171 4.171 18 C 0.029 3.971 19 N -0.348 5.348 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.257 4.257 23 N -0.597 5.597 24 Si 0.810 3.190 25 H -0.218 1.218 26 H -0.217 1.217 27 H -0.192 1.192 28 C 0.005 3.995 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.133 0.867 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.260 0.740 37 H 0.172 0.828 38 H 0.199 0.801 39 H 0.273 0.727 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.000 1.000 44 H 0.058 0.942 45 H 0.063 0.937 46 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -10.407 30.692 1.741 32.455 hybrid contribution 0.304 -1.153 -0.535 1.307 sum -10.103 29.539 1.206 31.242 Atomic orbital electron populations 1.22135 0.76909 1.05074 1.03409 1.47862 1.08547 1.04452 1.72138 1.21090 0.87571 0.86248 0.75039 1.90726 1.16368 1.87978 1.52032 1.21792 0.98741 0.88240 1.08494 1.20920 0.94056 0.81092 1.02483 1.45646 1.11401 1.04492 1.73812 1.16798 0.85935 0.82359 0.76283 1.90898 1.14091 1.87043 1.52590 1.21681 0.81608 0.95402 1.17304 1.22272 1.02021 0.91179 0.99463 1.22223 0.91194 1.02436 1.09744 1.25409 1.02446 0.78561 0.98969 1.84043 1.22041 1.29450 1.70609 1.21767 0.96552 0.82935 0.95330 0.90121 1.23179 1.02066 0.95087 0.96785 1.21728 0.96374 0.94551 0.84403 1.44705 1.80863 1.02074 1.07192 1.19440 1.38716 0.86082 0.92696 0.90109 1.25641 1.02356 0.99993 0.97744 1.70025 1.56341 1.20932 1.12437 0.85026 0.77591 0.78729 0.77635 1.21794 1.21705 1.19180 1.21590 0.98193 0.84814 0.94908 0.91322 0.91146 0.86743 0.84699 0.84270 0.92183 0.92455 0.73971 0.82829 0.80146 0.72684 0.90602 0.89624 0.89991 0.99955 0.94198 0.93745 0.97246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 9.13 127.77 1.17 2.31 16 2 N -0.60 -15.81 2.88 -815.97 -2.35 -18.16 16 3 C 0.51 13.37 7.67 87.66 0.67 14.05 16 4 O -0.59 -21.67 15.35 -3.04 -0.05 -21.71 16 5 C -0.13 -1.86 4.37 29.85 0.13 -1.73 16 6 C 0.14 2.78 4.96 86.38 0.43 3.21 16 7 N -0.70 -11.23 5.55 -467.09 -2.59 -13.82 16 8 C 0.60 13.38 7.79 86.44 0.67 14.05 16 9 O -0.57 -17.73 16.87 -4.36 -0.07 -17.81 16 10 C -0.11 -1.91 7.13 24.07 0.17 -1.73 16 11 C -0.13 -2.05 10.62 22.39 0.24 -1.81 16 12 C -0.24 -2.09 10.88 22.07 0.24 -1.85 16 13 C 0.02 0.09 12.08 67.10 0.81 0.90 16 14 O -0.17 -1.95 10.40 -4.93 -0.05 -2.00 16 15 C 0.14 5.03 3.36 46.18 0.16 5.19 16 16 H 0.08 3.32 6.99 -2.38 -0.02 3.30 16 17 C -0.13 -4.87 6.61 31.99 0.21 -4.66 16 18 C 0.15 7.67 5.89 86.86 0.51 8.18 16 19 N -0.62 -32.14 3.39 -691.98 -2.35 -34.49 16 20 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 21 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.06 -3.64 5.49 84.86 0.47 -3.18 16 23 N -0.95 -56.03 10.09 21.65 0.22 -55.81 16 24 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 25 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 26 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 C 0.13 5.52 6.88 86.73 0.60 6.12 16 29 H 0.07 1.10 7.89 -2.39 -0.02 1.08 16 30 H 0.07 1.45 6.07 -2.39 -0.01 1.43 16 31 H 0.11 0.93 6.45 -2.39 -0.02 0.92 16 32 H 0.14 1.10 8.11 -2.38 -0.02 1.08 16 33 H 0.14 0.98 7.41 -2.39 -0.02 0.96 16 34 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 35 H 0.06 1.45 8.10 -2.39 -0.02 1.44 16 36 H 0.42 3.64 8.23 -92.71 -0.76 2.87 16 37 H 0.15 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.18 0.62 8.06 -2.91 -0.02 0.59 16 39 H 0.26 -1.14 8.06 -2.91 -0.02 -1.16 16 40 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.09 2.83 6.09 -2.39 -0.01 2.82 16 42 H 0.08 4.53 5.87 -2.38 -0.01 4.52 16 43 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 44 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 45 H 0.04 1.72 6.94 -2.39 -0.02 1.71 16 46 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 Total: -1.00 -83.33 379.51 2.36 -80.96 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.25 Total: 9.09 kcal Atomic # 6 Polarization: 19.13 SS G_CDS: 7.33 Total: 26.46 kcal Atomic # 7 Polarization: -115.20 SS G_CDS: -7.08 Total: -122.28 kcal Atomic # 8 Polarization: -41.35 SS G_CDS: -0.17 Total: -41.52 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -83.33 2.36 -80.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732173447.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.208 kcal (2) G-P(sol) polarization free energy of solvation -83.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds