Wall clock time and date at job start Tue Mar 31 2020 19:19:23
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.36009 * 117.00055 * 2 1
4 4 C 1.35853 * 120.31129 * 0.03027 * 3 2 1
5 5 N 1.35452 * 120.77458 * 179.71746 * 4 3 2
6 6 H 0.96999 * 119.29255 * 180.27017 * 5 4 3
7 7 C 1.36426 * 121.40537 * 0.52096 * 5 4 3
8 8 C 1.48079 * 119.71756 * 179.75165 * 7 5 4
9 9 O 1.21508 * 119.99958 * 179.72427 * 8 7 5
10 10 N 1.34779 * 119.99655 * 359.72620 * 8 7 5
11 11 C 1.46499 * 119.99735 * 174.91539 * 10 8 7
12 12 C 1.52995 * 110.01677 * 65.12180 * 11 10 8
13 13 N 1.46496 * 109.47428 * 54.33796 * 12 11 10
14 14 C 1.36940 * 120.00067 * 174.91604 * 13 12 11
15 15 H 1.08008 * 119.99980 * 0.02562 * 14 13 12
16 16 C 1.38810 * 120.00117 * 180.02562 * 14 13 12
17 17 N 1.31617 * 119.99766 * 359.72701 * 16 14 13
18 18 Si 1.86803 * 119.99718 * 180.02562 * 16 14 13
19 19 H 1.48496 * 109.47405 * 0.02562 * 18 16 14
20 20 H 1.48509 * 109.46957 * 120.00358 * 18 16 14
21 21 H 1.48500 * 109.46880 * 239.99422 * 18 16 14
22 22 C 1.54272 * 110.03077 * 186.50848 * 11 10 8
23 23 C 1.54960 * 104.16052 * 95.75615 * 22 11 10
24 24 C 1.54887 * 102.77982 * 37.88509 * 23 22 11
25 25 C 1.53873 * 110.03477 * 303.72423 * 11 10 8
26 26 C 1.36178 * 120.56679 * 359.48021 * 7 5 4
27 27 C 1.41573 * 120.31685 * 179.97438 * 3 2 1
28 28 O 1.22264 * 120.65112 * 0.02562 * 27 3 2
29 29 H 1.09003 * 109.46970 * 180.02562 * 1 2 3
30 30 H 1.09007 * 109.46994 * 299.99461 * 1 2 3
31 31 H 1.08997 * 109.47430 * 59.99415 * 1 2 3
32 32 H 1.08001 * 119.61658 * 359.96990 * 4 3 2
33 33 H 0.97007 * 120.00274 * 354.91671 * 10 8 7
34 34 H 1.09004 * 109.46760 * 294.33529 * 12 11 10
35 35 H 1.09005 * 109.47284 * 174.34506 * 12 11 10
36 36 H 0.96994 * 120.00372 * 354.92120 * 13 12 11
37 37 H 0.97005 * 119.99577 * 179.97438 * 17 16 14
38 38 H 1.09000 * 110.48382 * 214.39997 * 22 11 10
39 39 H 1.09001 * 110.48763 * 337.04572 * 22 11 10
40 40 H 1.09003 * 110.71791 * 279.57580 * 23 22 11
41 41 H 1.08997 * 110.76604 * 156.22167 * 23 22 11
42 42 H 1.08994 * 110.49173 * 203.40663 * 24 23 22
43 43 H 1.09003 * 110.48575 * 80.76492 * 24 23 22
44 44 H 1.09001 * 110.03013 * 359.95058 * 25 11 10
45 45 H 1.08994 * 110.03182 * 121.37866 * 25 11 10
46 46 H 1.08001 * 120.40877 * 180.23619 * 26 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0465 1.2118 0.0000
4 6 1.3128 2.3552 0.0006
5 7 1.9180 3.5670 0.0064
6 1 1.3732 4.3695 0.0107
7 6 3.2773 3.6828 0.0011
8 6 3.8996 5.0265 0.0021
9 8 5.1097 5.1356 0.0025
10 7 3.1235 6.1285 0.0026
11 6 3.7350 7.4549 0.1161
12 6 4.5962 7.7416 -1.1155
13 7 3.7907 7.5655 -2.3265
14 6 4.3211 7.8695 -3.5518
15 1 5.3335 8.2386 -3.6256
16 6 3.5578 7.7031 -4.6992
17 7 2.3260 7.2482 -4.6098
18 14 4.2817 8.1171 -6.3707
19 1 5.6759 8.5990 -6.2008
20 1 4.2788 6.9028 -7.2258
21 1 3.4657 9.1777 -7.0146
22 6 2.6392 8.5316 0.2569
23 6 2.5214 8.7550 1.7858
24 6 3.9920 8.6533 2.2612
25 6 4.5946 7.5319 1.3900
26 6 4.0669 2.5733 0.0005
27 6 3.4599 1.2937 0.0005
28 8 4.1430 0.2797 0.0006
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5138 0.8901
31 1 -0.3634 0.5139 -0.8899
32 1 0.2344 2.2973 0.0006
33 1 2.1601 6.0433 -0.0721
34 1 5.4403 7.0522 -1.1371
35 1 4.9652 8.7663 -1.0703
36 1 2.8817 7.2338 -2.2603
37 1 1.7924 7.1323 -5.4115
38 1 2.9432 9.4526 -0.2407
39 1 1.6949 8.1705 -0.1506
40 1 1.9127 7.9752 2.2436
41 1 2.1129 9.7422 2.0018
42 1 4.0341 8.3814 3.3158
43 1 4.5149 9.5939 2.0876
44 1 4.5561 6.5826 1.9243
45 1 5.6254 7.7734 1.1308
46 1 5.1427 2.6680 0.0002
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001732230399.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:19:23
Heat of formation + Delta-G solvation = -81.463603 kcal
Electronic energy + Delta-G solvation = -29792.607480 eV
Core-core repulsion = 25682.621219 eV
Total energy + Delta-G solvation = -4109.986261 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-42.59991 -41.35246 -39.50094 -38.85429 -38.61221 -36.18474 -34.82983 -33.11370
-32.72527 -31.75721 -29.81737 -29.55101 -28.39775 -26.45487 -25.56810 -24.23963
-23.98924 -22.41895 -21.73485 -20.68092 -20.50038 -19.22226 -19.12055 -18.61181
-17.37644 -17.32612 -17.13714 -16.60302 -16.48763 -16.33143 -15.91968 -15.68834
-15.60961 -15.31200 -15.18310 -15.00602 -14.74419 -14.59614 -14.24614 -14.04653
-13.83193 -13.59979 -13.23353 -12.86185 -12.73059 -12.39599 -12.30955 -12.26367
-12.16762 -11.99106 -11.89083 -11.80994 -11.75425 -11.38934 -11.34512 -10.92420
-10.70760 -10.53887 -10.15640 -8.95649 -8.79688 -7.97712 -5.22071 -0.50420
0.11873 1.43822 1.46621 1.47241 1.54503 1.67266 1.79331 2.30523
2.54085 2.56021 3.29345 3.39041 3.48950 3.55364 3.65802 3.70145
3.83089 3.90723 4.18067 4.33688 4.39794 4.42138 4.47447 4.51092
4.55701 4.62109 4.69153 4.76454 4.81515 4.84563 4.94059 5.00396
5.09648 5.12795 5.20580 5.28461 5.31332 5.41912 5.48290 5.52980
5.57217 5.76755 6.24563 6.26544 6.33577 6.88531 6.93393 7.35256
8.07557 8.37306 9.25284
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.008648 B = 0.004047 C = 0.003179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3236.838255 B = 6917.021704 C = 8804.454701
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.005 3.995
2 O -0.323 6.323
3 C -0.061 4.061
4 C 0.074 3.926
5 N -0.531 5.531
6 H 0.441 0.559
7 C 0.148 3.852
8 C 0.560 3.440
9 O -0.531 6.531
10 N -0.689 5.689
11 C 0.174 3.826
12 C 0.144 3.856
13 N -0.728 5.728
14 C -0.242 4.242
15 H 0.063 0.937
16 C -0.063 4.063
17 N -0.959 5.959
18 Si 0.961 3.039
19 H -0.275 1.275
20 H -0.297 1.297
21 H -0.288 1.288
22 C -0.114 4.114
23 C -0.113 4.113
24 C -0.119 4.119
25 C -0.116 4.116
26 C -0.238 4.238
27 C 0.379 3.621
28 O -0.570 6.570
29 H 0.112 0.888
30 H 0.081 0.919
31 H 0.073 0.927
32 H 0.228 0.772
33 H 0.409 0.591
34 H 0.010 0.990
35 H 0.028 0.972
36 H 0.379 0.621
37 H 0.251 0.749
38 H 0.071 0.929
39 H 0.081 0.919
40 H 0.084 0.916
41 H 0.084 0.916
42 H 0.082 0.918
43 H 0.069 0.931
44 H 0.066 0.934
45 H 0.057 0.943
46 H 0.146 0.854
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.072 -1.377 17.473 21.282
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 O -0.236 6.236
3 C -0.112 4.112
4 C -0.055 4.055
5 N -0.144 5.144
6 H 0.282 0.718
7 C 0.032 3.968
8 C 0.344 3.656
9 O -0.407 6.407
10 N -0.341 5.341
11 C 0.088 3.912
12 C 0.016 3.984
13 N -0.371 5.371
14 C -0.375 4.375
15 H 0.081 0.919
16 C -0.256 4.256
17 N -0.610 5.610
18 Si 0.791 3.209
19 H -0.200 1.200
20 H -0.225 1.225
21 H -0.215 1.215
22 C -0.152 4.152
23 C -0.150 4.150
24 C -0.156 4.156
25 C -0.155 4.155
26 C -0.265 4.265
27 C 0.275 3.725
28 O -0.460 6.460
29 H 0.131 0.869
30 H 0.100 0.900
31 H 0.092 0.908
32 H 0.244 0.756
33 H 0.247 0.753
34 H 0.028 0.972
35 H 0.046 0.954
36 H 0.212 0.788
37 H 0.060 0.940
38 H 0.089 0.911
39 H 0.099 0.901
40 H 0.103 0.897
41 H 0.102 0.898
42 H 0.101 0.899
43 H 0.087 0.913
44 H 0.084 0.916
45 H 0.076 0.924
46 H 0.164 0.836
Dipole moment (debyes) X Y Z Total
from point charges -10.645 -1.930 17.386 20.477
hybrid contribution -0.181 0.170 -1.622 1.640
sum -10.826 -1.760 15.765 19.205
Atomic orbital electron populations
1.23525 0.76230 1.06109 1.03044 1.86230 1.23423 1.24408 1.89530
1.20111 0.93532 0.86395 1.11123 1.22315 1.00692 0.82263 1.00231
1.40836 1.03913 1.09911 1.59770 0.71751 1.20144 0.84152 0.94417
0.98043 1.17958 0.86901 0.83484 0.77252 1.90830 1.14694 1.86042
1.49091 1.45879 1.10301 1.05080 1.72887 1.21310 0.94262 0.81336
0.94262 1.21241 0.93757 0.97360 0.86010 1.42213 1.14643 1.79215
1.01055 1.19547 0.97203 1.34891 0.85809 0.91939 1.25294 0.96864
1.02997 1.00464 1.69726 1.09369 1.53701 1.28196 0.85263 0.77812
0.76932 0.80914 1.19975 1.22488 1.21462 1.22585 0.97125 0.97212
0.98318 1.22529 0.96414 1.03129 0.92930 1.22381 0.96151 0.97725
0.99390 1.22381 0.98798 1.00180 0.94098 1.22246 1.01921 0.91128
1.11214 1.17248 0.88083 0.89270 0.77867 1.90791 1.67272 1.39064
1.48912 0.86922 0.90044 0.90848 0.75588 0.75349 0.97241 0.95387
0.78800 0.94007 0.91079 0.90087 0.89748 0.89773 0.89937 0.91270
0.91560 0.92398 0.83593
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 0.05 9.81 113.37 1.11 1.17 16
2 O -0.32 -8.20 10.33 -78.52 -0.81 -9.01 16
3 C -0.06 -1.59 6.71 22.54 0.15 -1.44 16
4 C 0.07 1.08 10.22 83.58 0.85 1.94 16
5 N -0.53 -8.18 5.26 -184.20 -0.97 -9.15 16
6 H 0.44 3.31 7.01 -92.71 -0.65 2.66 16
7 C 0.15 3.81 6.77 40.56 0.27 4.09 16
8 C 0.56 16.62 6.85 86.86 0.59 17.21 16
9 O -0.53 -20.32 13.55 -3.74 -0.05 -20.37 16
10 N -0.69 -16.54 4.44 -422.28 -1.88 -18.42 16
11 C 0.17 4.71 0.57 4.33 0.00 4.72 16
12 C 0.14 5.66 4.63 86.38 0.40 6.06 16
13 N -0.73 -34.38 5.28 -343.45 -1.81 -36.20 16
14 C -0.24 -13.31 9.99 84.03 0.84 -12.47 16
15 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16
16 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16
17 N -0.96 -54.74 13.06 21.65 0.28 -54.45 16
18 Si 0.96 45.77 29.55 68.60 2.03 47.80 16
19 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16
20 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16
21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16
22 C -0.11 -2.50 5.78 31.70 0.18 -2.32 16
23 C -0.11 -1.65 6.91 31.91 0.22 -1.43 16
24 C -0.12 -2.02 6.83 31.67 0.22 -1.80 16
25 C -0.12 -2.79 5.22 31.32 0.16 -2.63 16
26 C -0.24 -7.80 9.53 22.63 0.22 -7.59 16
27 C 0.38 13.49 6.78 23.93 0.16 13.66 16
28 O -0.57 -25.65 17.71 8.95 0.16 -25.49 16
29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16
30 H 0.08 0.44 7.66 -2.38 -0.02 0.42 16
31 H 0.07 0.55 7.66 -2.39 -0.02 0.53 16
32 H 0.23 0.76 6.21 -2.91 -0.02 0.74 16
33 H 0.41 6.67 6.46 -92.70 -0.60 6.07 16
34 H 0.01 0.44 6.58 -2.38 -0.02 0.43 16
35 H 0.03 1.12 8.02 -2.38 -0.02 1.10 16
36 H 0.38 17.75 7.18 -92.71 -0.67 17.09 16
37 H 0.25 13.95 8.31 -92.70 -0.77 13.18 16
38 H 0.07 1.85 7.77 -2.39 -0.02 1.84 16
39 H 0.08 1.63 7.70 -2.39 -0.02 1.61 16
40 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16
41 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16
42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
44 H 0.07 1.63 6.99 -2.39 -0.02 1.62 16
45 H 0.06 1.61 7.67 -2.39 -0.02 1.59 16
46 H 0.15 5.31 7.58 -2.91 -0.02 5.28 16
Total: -1.00 -86.77 373.95 1.94 -84.83
By element:
Atomic # 1 Polarization: 25.23 SS G_CDS: -0.87 Total: 24.36 kcal
Atomic # 6 Polarization: 10.25 SS G_CDS: 5.86 Total: 16.11 kcal
Atomic # 7 Polarization: -113.85 SS G_CDS: -4.38 Total: -118.22 kcal
Atomic # 8 Polarization: -54.17 SS G_CDS: -0.70 Total: -54.88 kcal
Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal
Total: -86.77 1.94 -84.83 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001732230399.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.365 kcal
(2) G-P(sol) polarization free energy of solvation -86.766 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.400 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.829 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds