Wall clock time and date at job start Tue Mar 31 2020 18:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00390 * 2 1 4 4 C 1.34779 * 120.00049 * 179.97438 * 2 1 3 5 5 O 1.21535 * 119.99848 * 5.39704 * 4 2 1 6 6 C 1.47947 * 120.00157 * 185.39528 * 4 2 1 7 7 C 1.39212 * 120.20033 * 58.22095 * 6 4 2 8 8 C 1.38210 * 119.99981 * 180.02562 * 7 6 4 9 9 C 1.38375 * 120.39498 * 359.97438 * 8 7 6 10 10 C 1.38213 * 120.39914 * 0.02562 * 9 8 7 11 11 C 1.39214 * 119.99484 * 359.68036 * 10 9 8 12 12 C 1.47944 * 120.20004 * 180.29595 * 11 10 9 13 13 O 1.21539 * 120.00480 * 176.44709 * 12 11 10 14 14 N 1.34781 * 119.99798 * 356.44763 * 12 11 10 15 15 C 1.46501 * 119.99959 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46918 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.47521 * 304.99894 * 16 15 14 18 18 O 1.42901 * 109.47159 * 65.00881 * 16 15 14 19 19 C 1.53008 * 109.46915 * 185.00361 * 16 15 14 20 20 N 1.46500 * 109.47089 * 180.02562 * 19 16 15 21 21 C 1.36933 * 120.00007 * 180.02562 * 20 19 16 22 22 H 1.07996 * 120.00101 * 359.97438 * 21 20 19 23 23 C 1.38820 * 120.00198 * 180.02562 * 21 20 19 24 24 N 1.31610 * 120.00305 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99557 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47082 * 89.99978 * 25 23 21 27 27 H 1.48501 * 109.46546 * 209.99761 * 25 23 21 28 28 H 1.48493 * 109.47228 * 329.99799 * 25 23 21 29 29 H 1.09006 * 109.47001 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47314 * 240.00401 * 1 2 3 31 31 H 1.09000 * 109.46953 * 120.00110 * 1 2 3 32 32 H 1.09000 * 109.47768 * 85.91342 * 3 2 1 33 33 H 1.09003 * 109.47612 * 205.91570 * 3 2 1 34 34 H 1.09007 * 109.46961 * 325.91214 * 3 2 1 35 35 H 1.07999 * 120.00215 * 359.97127 * 7 6 4 36 36 H 1.07993 * 119.80609 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.79854 * 180.02562 * 9 8 7 38 38 H 1.07997 * 120.00212 * 179.97438 * 10 9 8 39 39 H 0.96993 * 120.00278 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47629 * 300.00516 * 15 14 12 41 41 H 1.09008 * 109.46594 * 60.00288 * 15 14 12 42 42 H 0.96692 * 114.00263 * 59.99638 * 18 16 15 43 43 H 1.08997 * 109.47377 * 300.00089 * 19 16 15 44 44 H 1.08999 * 109.47051 * 60.00423 * 19 16 15 45 45 H 0.97006 * 120.00168 * 0.02562 * 20 19 16 46 46 H 0.96998 * 120.00665 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5352 -2.2174 -0.0980 6 6 3.6134 -1.1700 0.1210 7 6 4.2269 -0.5860 1.2258 8 6 5.6047 -0.5905 1.3339 9 6 6.3823 -1.1737 0.3490 10 6 5.7905 -1.7582 -0.7548 11 6 4.4038 -1.7684 -0.8774 12 6 3.7653 -2.3985 -2.0538 13 8 2.5538 -2.4628 -2.1262 14 7 4.5272 -2.9013 -3.0454 15 6 3.8950 -3.5258 -4.2101 16 6 4.9758 -4.0090 -5.1792 17 1 5.6326 -3.1777 -5.4349 18 8 5.7395 -5.0472 -4.5618 19 6 4.3169 -4.5480 -6.4506 20 7 5.3518 -5.0113 -7.3782 21 6 4.9976 -5.5377 -8.5917 22 1 3.9553 -5.6118 -8.8647 23 6 5.9782 -5.9772 -9.4705 24 7 5.6378 -6.4837 -10.6366 25 14 7.7810 -5.8497 -8.9980 26 1 8.1991 -7.0925 -8.3009 27 1 8.6019 -5.6687 -10.2222 28 1 7.9750 -4.6866 -8.0954 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 2.3159 1.6200 1.0250 33 1 3.1797 1.1212 -0.4491 34 1 1.6421 2.0089 -0.5760 35 1 3.6262 -0.1287 1.9981 36 1 6.0774 -0.1363 2.1921 37 1 7.4582 -1.1721 0.4434 38 1 6.4036 -2.2111 -1.5199 39 1 5.4941 -2.8504 -2.9876 40 1 3.2921 -4.3739 -3.8853 41 1 3.2573 -2.7976 -4.7114 42 1 5.2182 -5.8206 -4.3071 43 1 3.6600 -5.3794 -6.1950 44 1 3.7344 -3.7562 -6.9215 45 1 6.2880 -4.9451 -7.1329 46 1 6.3229 -6.7911 -11.2506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732661325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:45 Heat of formation + Delta-G solvation = -62.907809 kcal Electronic energy + Delta-G solvation = -28601.997865 eV Core-core repulsion = 24492.816244 eV Total energy + Delta-G solvation = -4109.181621 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00824 -39.40735 -38.45364 -37.64998 -35.67757 -34.55046 -34.14108 -31.96872 -31.85381 -31.38277 -29.34972 -28.33446 -26.68753 -25.82301 -23.95076 -23.46039 -22.22578 -21.51371 -20.63559 -19.97423 -18.32805 -17.73577 -17.34899 -16.69102 -16.42865 -16.15264 -16.00429 -15.71155 -15.27701 -14.99022 -14.88609 -14.64205 -14.49978 -13.80240 -13.74707 -13.58966 -13.35672 -13.21205 -13.08053 -12.95402 -12.75983 -12.56894 -12.39588 -12.38632 -12.25283 -11.98632 -11.88348 -11.29841 -10.87110 -10.80967 -10.24447 -10.16954 -9.93204 -9.71265 -9.55054 -9.52474 -9.40391 -9.12264 -8.93116 -8.89255 -7.26218 -5.77861 -3.14093 0.31874 0.66467 2.47296 2.63638 2.82366 2.95881 3.39134 3.43836 3.46040 3.46311 4.09213 4.29360 4.32005 4.47832 4.53967 4.59582 4.70847 4.71292 4.82502 4.85975 4.93854 4.96398 5.14703 5.20328 5.26591 5.31675 5.34146 5.45006 5.51188 5.57540 5.66553 5.71085 5.78502 5.79493 5.86263 5.88089 6.18460 6.25083 6.32585 6.42353 6.55417 7.06380 7.36350 7.77404 7.98365 7.99757 8.15289 8.40606 9.20199 9.92021 10.11913 11.40219 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002329 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.101639 B =12017.573736 C =13051.912980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.623 5.623 3 C 0.080 3.920 4 C 0.560 3.440 5 O -0.489 6.489 6 C -0.070 4.070 7 C -0.099 4.099 8 C -0.099 4.099 9 C -0.108 4.108 10 C -0.088 4.088 11 C -0.092 4.092 12 C 0.541 3.459 13 O -0.504 6.504 14 N -0.718 5.718 15 C 0.092 3.908 16 C 0.085 3.915 17 H 0.104 0.896 18 O -0.557 6.557 19 C 0.131 3.869 20 N -0.749 5.749 21 C -0.248 4.248 22 H 0.090 0.910 23 C 0.005 3.995 24 N -0.933 5.933 25 Si 0.888 3.112 26 H -0.283 1.283 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.401 0.599 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.377 0.623 43 H 0.033 0.967 44 H 0.037 0.963 45 H 0.366 0.634 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 18.999 29.397 35.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.359 5.359 3 C -0.063 4.063 4 C 0.346 3.654 5 O -0.361 6.361 6 C -0.075 4.075 7 C -0.117 4.117 8 C -0.118 4.118 9 C -0.126 4.126 10 C -0.107 4.107 11 C -0.096 4.096 12 C 0.327 3.673 13 O -0.379 6.379 14 N -0.371 5.371 15 C -0.032 4.032 16 C 0.026 3.974 17 H 0.122 0.878 18 O -0.363 6.363 19 C 0.002 3.998 20 N -0.396 5.396 21 C -0.377 4.377 22 H 0.107 0.893 23 C -0.191 4.191 24 N -0.581 5.581 25 Si 0.719 3.281 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.237 0.763 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.225 0.775 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.200 0.800 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.475 18.693 28.953 34.552 hybrid contribution 1.381 -0.206 0.249 1.419 sum -1.093 18.487 29.202 34.579 Atomic orbital electron populations 1.21580 0.78663 1.02030 1.02576 1.47580 1.07046 1.05926 1.75369 1.21836 0.97539 0.85338 1.01609 1.18079 0.86554 0.83753 0.76983 1.90834 1.68931 1.30891 1.45418 1.19913 0.93548 0.98610 0.95384 1.21218 0.95099 0.98488 0.96910 1.21310 0.93297 0.98213 0.98941 1.21313 1.00687 0.97122 0.93526 1.21380 0.93056 0.97856 0.98399 1.19981 0.93574 1.00459 0.95541 1.18274 0.87171 0.79284 0.82600 1.90940 1.12912 1.56080 1.77977 1.45806 1.10355 1.60345 1.20577 1.22094 0.96249 0.98725 0.86122 1.22441 0.92723 0.90874 0.91400 0.87829 1.86522 1.39111 1.29738 1.80908 1.21167 0.92225 0.97470 0.88889 1.42559 1.03551 1.76216 1.17245 1.19047 0.94860 1.32843 0.90998 0.89256 1.24680 0.97590 1.00661 0.96161 1.69702 1.32464 1.47175 1.08749 0.86485 0.86460 0.77989 0.77195 1.21008 1.21816 1.20296 0.90788 0.92273 0.91787 0.92608 0.91049 0.91041 0.84916 0.84835 0.84739 0.84697 0.76282 0.90669 0.90195 0.77486 0.94948 0.94473 0.80033 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.17 59.84 0.61 1.41 16 2 N -0.62 -6.19 3.27 -190.61 -0.62 -6.81 16 3 C 0.08 0.48 9.39 59.85 0.56 1.04 16 4 C 0.56 7.46 5.80 -12.28 -0.07 7.39 16 5 O -0.49 -8.74 14.66 -18.88 -0.28 -9.02 16 6 C -0.07 -0.76 4.35 -104.63 -0.46 -1.22 16 7 C -0.10 -0.71 8.38 -39.23 -0.33 -1.04 16 8 C -0.10 -0.54 10.03 -39.54 -0.40 -0.94 16 9 C -0.11 -0.64 10.03 -39.54 -0.40 -1.03 16 10 C -0.09 -0.70 9.53 -39.23 -0.37 -1.07 16 11 C -0.09 -1.03 5.90 -104.63 -0.62 -1.64 16 12 C 0.54 7.57 7.74 -12.28 -0.10 7.48 16 13 O -0.50 -9.09 12.86 -18.88 -0.24 -9.34 16 14 N -0.72 -8.56 5.45 -61.22 -0.33 -8.89 16 15 C 0.09 1.21 5.31 -4.04 -0.02 1.19 16 16 C 0.09 1.23 3.09 -26.73 -0.08 1.15 16 17 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 18 O -0.56 -8.11 13.03 -35.23 -0.46 -8.57 16 19 C 0.13 2.43 5.92 -4.04 -0.02 2.41 16 20 N -0.75 -17.83 5.30 -59.91 -0.32 -18.14 16 21 C -0.25 -7.09 10.47 -15.06 -0.16 -7.24 16 22 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 23 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 24 N -0.93 -29.57 13.97 55.49 0.78 -28.79 16 25 Si 0.89 22.45 27.74 -169.99 -4.71 17.73 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 29 H 0.07 0.39 7.85 -51.93 -0.41 -0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.22 8.11 -51.93 -0.42 -0.20 16 33 H 0.07 0.46 6.57 -51.93 -0.34 0.11 16 34 H 0.07 0.33 8.01 -51.92 -0.42 -0.09 16 35 H 0.13 0.69 7.96 -52.49 -0.42 0.28 16 36 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 37 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 38 H 0.14 0.84 6.42 -52.49 -0.34 0.50 16 39 H 0.40 3.92 6.52 -40.82 -0.27 3.65 16 40 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 42 H 0.38 4.64 9.04 45.56 0.41 5.05 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.37 8.65 5.40 -40.82 -0.22 8.43 16 46 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 384.00 15.07 5.79 5.79 Total: -1.00 -39.41 384.00 -8.16 -47.57 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.81 Total: 10.55 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -1.95 Total: 7.92 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.50 Total: -62.64 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.98 Total: -26.92 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.71 Total: 17.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -39.41 -8.16 -47.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732661325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.338 kcal (2) G-P(sol) polarization free energy of solvation -39.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds