Wall clock time and date at job start Tue Mar 31 2020 18:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46499 * 120.00390 * 2 1 4 4 C 1.34779 * 120.00049 * 179.97438 * 2 1 3 5 5 O 1.21535 * 119.99848 * 5.39704 * 4 2 1 6 6 C 1.47947 * 120.00157 * 185.39528 * 4 2 1 7 7 C 1.39212 * 120.20033 * 58.22095 * 6 4 2 8 8 C 1.38210 * 119.99981 * 180.02562 * 7 6 4 9 9 C 1.38375 * 120.39498 * 359.97438 * 8 7 6 10 10 C 1.38213 * 120.39914 * 0.02562 * 9 8 7 11 11 C 1.39214 * 119.99484 * 359.68036 * 10 9 8 12 12 C 1.47944 * 120.20004 * 180.29595 * 11 10 9 13 13 O 1.21539 * 120.00480 * 176.44709 * 12 11 10 14 14 N 1.34781 * 119.99798 * 356.44763 * 12 11 10 15 15 C 1.46501 * 119.99959 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.46918 * 179.97438 * 15 14 12 17 17 H 1.08995 * 109.47521 * 304.99894 * 16 15 14 18 18 O 1.42901 * 109.47159 * 65.00881 * 16 15 14 19 19 C 1.53008 * 109.46915 * 185.00361 * 16 15 14 20 20 N 1.46500 * 109.47089 * 180.02562 * 19 16 15 21 21 C 1.36933 * 120.00007 * 180.02562 * 20 19 16 22 22 H 1.07996 * 120.00101 * 359.97438 * 21 20 19 23 23 C 1.38820 * 120.00198 * 180.02562 * 21 20 19 24 24 N 1.31610 * 120.00305 * 179.97438 * 23 21 20 25 25 Si 1.86806 * 119.99557 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.47082 * 89.99978 * 25 23 21 27 27 H 1.48501 * 109.46546 * 209.99761 * 25 23 21 28 28 H 1.48493 * 109.47228 * 329.99799 * 25 23 21 29 29 H 1.09006 * 109.47001 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47314 * 240.00401 * 1 2 3 31 31 H 1.09000 * 109.46953 * 120.00110 * 1 2 3 32 32 H 1.09000 * 109.47768 * 85.91342 * 3 2 1 33 33 H 1.09003 * 109.47612 * 205.91570 * 3 2 1 34 34 H 1.09007 * 109.46961 * 325.91214 * 3 2 1 35 35 H 1.07999 * 120.00215 * 359.97127 * 7 6 4 36 36 H 1.07993 * 119.80609 * 179.97438 * 8 7 6 37 37 H 1.08000 * 119.79854 * 180.02562 * 9 8 7 38 38 H 1.07997 * 120.00212 * 179.97438 * 10 9 8 39 39 H 0.96993 * 120.00278 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47629 * 300.00516 * 15 14 12 41 41 H 1.09008 * 109.46594 * 60.00288 * 15 14 12 42 42 H 0.96692 * 114.00263 * 59.99638 * 18 16 15 43 43 H 1.08997 * 109.47377 * 300.00089 * 19 16 15 44 44 H 1.08999 * 109.47051 * 60.00423 * 19 16 15 45 45 H 0.97006 * 120.00168 * 0.02562 * 20 19 16 46 46 H 0.96998 * 120.00665 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5352 -2.2174 -0.0980 6 6 3.6134 -1.1700 0.1210 7 6 4.2269 -0.5860 1.2258 8 6 5.6047 -0.5905 1.3339 9 6 6.3823 -1.1737 0.3490 10 6 5.7905 -1.7582 -0.7548 11 6 4.4038 -1.7684 -0.8774 12 6 3.7653 -2.3985 -2.0538 13 8 2.5538 -2.4628 -2.1262 14 7 4.5272 -2.9013 -3.0454 15 6 3.8950 -3.5258 -4.2101 16 6 4.9758 -4.0090 -5.1792 17 1 5.6326 -3.1777 -5.4349 18 8 5.7395 -5.0472 -4.5618 19 6 4.3169 -4.5480 -6.4506 20 7 5.3518 -5.0113 -7.3782 21 6 4.9976 -5.5377 -8.5917 22 1 3.9553 -5.6118 -8.8647 23 6 5.9782 -5.9772 -9.4705 24 7 5.6378 -6.4837 -10.6366 25 14 7.7810 -5.8497 -8.9980 26 1 8.1991 -7.0925 -8.3009 27 1 8.6019 -5.6687 -10.2222 28 1 7.9750 -4.6866 -8.0954 29 1 -0.3633 1.0277 -0.0005 30 1 -0.3634 -0.5137 0.8900 31 1 -0.3633 -0.5139 -0.8900 32 1 2.3159 1.6200 1.0250 33 1 3.1797 1.1212 -0.4491 34 1 1.6421 2.0089 -0.5760 35 1 3.6262 -0.1287 1.9981 36 1 6.0774 -0.1363 2.1921 37 1 7.4582 -1.1721 0.4434 38 1 6.4036 -2.2111 -1.5199 39 1 5.4941 -2.8504 -2.9876 40 1 3.2921 -4.3739 -3.8853 41 1 3.2573 -2.7976 -4.7114 42 1 5.2182 -5.8206 -4.3071 43 1 3.6600 -5.3794 -6.1950 44 1 3.7344 -3.7562 -6.9215 45 1 6.2880 -4.9451 -7.1329 46 1 6.3229 -6.7911 -11.2506 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732661325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:44 Heat of formation + Delta-G solvation = -94.809832 kcal Electronic energy + Delta-G solvation = -28603.381241 eV Core-core repulsion = 24492.816244 eV Total energy + Delta-G solvation = -4110.564997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.82314 -40.40376 -39.25672 -38.81605 -36.53151 -36.22231 -35.42729 -33.52213 -32.58391 -32.46405 -30.71279 -28.93435 -27.59283 -27.10199 -24.97821 -24.09343 -23.75025 -22.90861 -21.60943 -20.75308 -19.82784 -19.09508 -18.11476 -17.75224 -17.35386 -17.28019 -16.87798 -16.58574 -16.55323 -15.97774 -15.91930 -15.67775 -15.51666 -15.32857 -15.01994 -14.55857 -14.39763 -14.30028 -14.10130 -13.97390 -13.64503 -13.51897 -13.47737 -13.32850 -13.19281 -12.96641 -12.82716 -12.81545 -12.42252 -12.24539 -11.91583 -11.84749 -11.29534 -11.05402 -11.00771 -10.77969 -10.30610 -10.02144 -9.96677 -9.67340 -9.34443 -8.05016 -5.39478 -0.34880 0.12845 1.38789 1.42698 1.50014 1.66068 1.82575 1.95367 2.09193 2.47709 2.77461 3.24627 3.28945 3.44538 3.47710 3.60831 3.77959 3.94019 4.05168 4.07689 4.14185 4.22768 4.30977 4.34580 4.38692 4.44429 4.53571 4.60157 4.70644 4.71443 4.83634 4.85434 4.87491 4.88384 5.12340 5.15927 5.25763 5.28616 5.38325 5.52612 5.71535 5.79841 6.18157 6.30019 6.43034 6.69625 7.05538 7.09109 7.22860 7.79906 8.00712 9.16309 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018736 B = 0.002329 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.101639 B =12017.573736 C =13051.912980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.623 5.623 3 C 0.075 3.925 4 C 0.549 3.451 5 O -0.554 6.554 6 C -0.094 4.094 7 C -0.094 4.094 8 C -0.083 4.083 9 C -0.101 4.101 10 C -0.087 4.087 11 C -0.121 4.121 12 C 0.535 3.465 13 O -0.555 6.555 14 N -0.705 5.705 15 C 0.103 3.897 16 C 0.109 3.891 17 H 0.115 0.885 18 O -0.561 6.561 19 C 0.124 3.876 20 N -0.751 5.751 21 C -0.240 4.240 22 H 0.054 0.946 23 C -0.064 4.064 24 N -0.983 5.983 25 Si 0.962 3.038 26 H -0.279 1.279 27 H -0.295 1.295 28 H -0.250 1.250 29 H 0.112 0.888 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.152 0.848 36 H 0.173 0.827 37 H 0.169 0.831 38 H 0.150 0.850 39 H 0.414 0.586 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.388 0.612 43 H 0.032 0.968 44 H 0.037 0.963 45 H 0.370 0.630 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.809 21.552 32.619 39.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.357 5.357 3 C -0.067 4.067 4 C 0.337 3.663 5 O -0.431 6.431 6 C -0.098 4.098 7 C -0.113 4.113 8 C -0.101 4.101 9 C -0.119 4.119 10 C -0.105 4.105 11 C -0.125 4.125 12 C 0.323 3.677 13 O -0.434 6.434 14 N -0.359 5.359 15 C -0.022 4.022 16 C 0.049 3.951 17 H 0.133 0.867 18 O -0.368 6.368 19 C -0.003 4.003 20 N -0.397 5.397 21 C -0.371 4.371 22 H 0.073 0.927 23 C -0.256 4.256 24 N -0.634 5.634 25 Si 0.789 3.211 26 H -0.205 1.205 27 H -0.221 1.221 28 H -0.175 1.175 29 H 0.131 0.869 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.190 0.810 37 H 0.186 0.814 38 H 0.167 0.833 39 H 0.252 0.748 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.237 0.763 43 H 0.050 0.950 44 H 0.055 0.945 45 H 0.204 0.796 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.916 21.316 32.230 38.652 hybrid contribution 0.249 -0.937 -0.686 1.188 sum 1.166 20.379 31.544 37.572 Atomic orbital electron populations 1.21660 0.78434 1.03977 1.01042 1.47791 1.07629 1.06567 1.73715 1.22097 0.97173 0.83694 1.03740 1.18692 0.87911 0.83700 0.75956 1.90778 1.70437 1.33197 1.48718 1.19924 0.92088 1.00656 0.97125 1.21468 0.96313 0.97681 0.95806 1.21786 0.92299 0.96437 0.99579 1.21756 1.02444 0.95383 0.92275 1.21595 0.91516 0.97759 0.99675 1.19876 0.95067 1.02530 0.95045 1.18872 0.86739 0.78697 0.83434 1.90921 1.15150 1.58216 1.79113 1.45644 1.10882 1.59626 1.19714 1.21839 0.95695 0.98355 0.86347 1.22123 0.92631 0.90891 0.89437 0.86715 1.86498 1.39451 1.30236 1.80628 1.21367 0.91544 0.97421 0.89988 1.42503 1.04790 1.76005 1.16431 1.19029 0.93395 1.31962 0.92723 0.92747 1.25565 1.02873 1.01008 0.96150 1.69888 1.34083 1.49076 1.10318 0.85305 0.79782 0.78911 0.77098 1.20505 1.22141 1.17498 0.86938 0.92584 0.94681 0.89710 0.91387 0.89428 0.83049 0.80965 0.81353 0.83253 0.74761 0.91556 0.90830 0.76300 0.94997 0.94486 0.79557 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.61 10.17 127.77 1.30 2.91 16 2 N -0.62 -12.44 3.27 -875.24 -2.87 -15.30 16 3 C 0.07 0.75 9.39 127.77 1.20 1.95 16 4 C 0.55 15.32 5.80 86.82 0.50 15.83 16 5 O -0.55 -21.55 14.66 19.32 0.28 -21.27 16 6 C -0.09 -1.99 4.35 -19.87 -0.09 -2.08 16 7 C -0.09 -1.09 8.38 22.50 0.19 -0.90 16 8 C -0.08 -0.51 10.03 22.30 0.22 -0.28 16 9 C -0.10 -0.72 10.03 22.30 0.22 -0.49 16 10 C -0.09 -1.13 9.53 22.50 0.21 -0.92 16 11 C -0.12 -2.65 5.90 -19.87 -0.12 -2.76 16 12 C 0.53 15.40 7.74 86.81 0.67 16.07 16 13 O -0.56 -21.46 12.86 19.31 0.25 -21.21 16 14 N -0.71 -16.48 5.45 -465.87 -2.54 -19.02 16 15 C 0.10 2.67 5.31 86.38 0.46 3.13 16 16 C 0.11 2.98 3.09 30.60 0.09 3.07 16 17 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 18 O -0.56 -15.10 13.03 -148.98 -1.94 -17.04 16 19 C 0.12 4.56 5.92 86.38 0.51 5.07 16 20 N -0.75 -35.08 5.30 -343.44 -1.82 -36.90 16 21 C -0.24 -13.93 10.47 84.04 0.88 -13.05 16 22 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 23 C -0.06 -3.85 5.50 84.87 0.47 -3.38 16 24 N -0.98 -63.81 13.97 21.65 0.30 -63.51 16 25 Si 0.96 45.99 27.74 68.60 1.90 47.89 16 26 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 27 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 28 H -0.25 -10.76 6.52 99.48 0.65 -10.12 16 29 H 0.11 1.03 7.85 -2.38 -0.02 1.01 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.38 8.11 -2.39 -0.02 0.36 16 33 H 0.07 0.76 6.57 -2.39 -0.02 0.74 16 34 H 0.09 0.60 8.01 -2.38 -0.02 0.58 16 35 H 0.15 1.09 7.96 -2.91 -0.02 1.06 16 36 H 0.17 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 38 H 0.15 1.38 6.42 -2.91 -0.02 1.36 16 39 H 0.41 7.33 6.52 -92.71 -0.60 6.73 16 40 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.39 8.87 9.04 -74.06 -0.67 8.20 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.37 16.62 5.40 -92.70 -0.50 16.12 16 46 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -91.85 384.00 -0.50 -92.35 By element: Atomic # 1 Polarization: 30.64 SS G_CDS: -0.81 Total: 29.83 kcal Atomic # 6 Polarization: 17.43 SS G_CDS: 6.73 Total: 24.17 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -6.92 Total: -134.72 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -1.41 Total: -59.52 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.90 Total: 47.89 kcal Total: -91.85 -0.50 -92.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732661325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.456 kcal (2) G-P(sol) polarization free energy of solvation -91.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds