Wall clock time and date at job start Tue Mar 31 2020 18:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46500 * 119.99770 * 2 1 4 4 C 1.52992 * 109.47517 * 270.00001 * 3 2 1 5 5 C 1.52999 * 109.47430 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.47040 * 180.02562 * 5 4 3 7 7 C 1.36938 * 119.99637 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.38814 * 119.99933 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99471 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00093 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46935 * 60.00133 * 11 9 7 13 13 H 1.48505 * 109.46988 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47052 * 300.00186 * 11 9 7 15 15 C 1.34767 * 120.00022 * 180.02562 * 2 1 3 16 16 O 1.21558 * 119.99947 * 184.85187 * 15 2 1 17 17 C 1.47859 * 120.00259 * 4.84868 * 15 2 1 18 18 C 1.39613 * 120.11724 * 320.74285 * 17 15 2 19 19 C 1.37952 * 119.96696 * 180.02562 * 18 17 15 20 20 C 1.38291 * 120.20583 * 359.73519 * 19 18 17 21 21 C 1.38806 * 120.24061 * 0.53865 * 20 19 18 22 22 O 1.35913 * 119.98655 * 179.72423 * 21 20 19 23 23 C 1.42898 * 117.00038 * 359.73571 * 22 21 20 24 24 C 1.50693 * 109.47169 * 179.97438 * 23 22 21 25 25 N 1.34777 * 120.00369 * 179.72499 * 24 23 22 26 26 O 1.21291 * 120.00250 * 359.97438 * 24 23 22 27 27 C 1.38502 * 120.02761 * 359.45894 * 21 20 19 28 28 H 1.09000 * 109.46877 * 265.66766 * 1 2 3 29 29 H 1.09005 * 109.47223 * 25.66315 * 1 2 3 30 30 H 1.08997 * 109.46913 * 145.66671 * 1 2 3 31 31 H 1.09003 * 109.47171 * 30.00307 * 3 2 1 32 32 H 1.09003 * 109.46910 * 150.00320 * 3 2 1 33 33 H 1.08999 * 109.47129 * 300.00824 * 4 3 2 34 34 H 1.09007 * 109.47227 * 60.00211 * 4 3 2 35 35 H 1.08994 * 109.46996 * 300.00354 * 5 4 3 36 36 H 1.09003 * 109.46910 * 60.00372 * 5 4 3 37 37 H 0.96996 * 119.99981 * 0.02562 * 6 5 4 38 38 H 0.97004 * 119.99625 * 179.97438 * 10 9 7 39 39 H 1.08001 * 120.01600 * 0.02562 * 18 17 15 40 40 H 1.07997 * 119.90005 * 180.02562 * 19 18 17 41 41 H 1.08003 * 119.88258 * 180.29667 * 20 19 18 42 42 H 1.08999 * 109.47230 * 59.99786 * 23 22 21 43 43 H 1.09001 * 109.46891 * 299.99544 * 23 22 21 44 44 H 0.97003 * 120.00476 * 180.27671 * 25 24 23 45 45 H 0.97003 * 119.99798 * 0.27422 * 25 24 23 46 46 H 1.07994 * 120.09829 * 180.24334 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4424 5 6 3.2169 3.0359 -1.4424 6 7 3.4605 3.4591 -2.8236 7 6 4.1336 4.6252 -3.0738 8 1 4.4851 5.2325 -2.2529 9 6 4.3649 5.0260 -4.3825 10 7 3.9377 4.2849 -5.3829 11 14 5.2836 6.6162 -4.7238 12 1 6.6410 6.5417 -4.1262 13 1 5.3994 6.8159 -6.1908 14 1 4.5412 7.7549 -4.1257 15 6 2.1389 -1.1671 -0.0005 16 8 3.3512 -1.1690 0.0885 17 6 1.4036 -2.4453 -0.1093 18 6 0.1909 -2.6152 0.5613 19 6 -0.4922 -3.8092 0.4580 20 6 0.0176 -4.8381 -0.3127 21 6 1.2253 -4.6805 -0.9785 22 8 1.7244 -5.6971 -1.7300 23 6 0.9562 -6.9008 -1.7852 24 6 1.6604 -7.9066 -2.6588 25 7 1.1198 -9.1257 -2.8536 26 8 2.7161 -7.6206 -3.1831 27 6 1.9194 -3.4859 -0.8818 28 1 -0.3633 -0.0776 1.0247 29 1 -0.3634 0.9263 -0.4451 30 1 -0.3633 -0.8486 -0.5796 31 1 1.6084 2.0284 0.5139 32 1 3.1500 1.1384 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.5001 1.8409 -1.9563 35 1 2.6274 3.7952 -0.9286 36 1 4.1694 2.9059 -0.9284 37 1 3.1451 2.9134 -3.5609 38 1 4.0991 4.5652 -6.2975 39 1 -0.2121 -1.8122 1.1606 40 1 -1.4304 -3.9393 0.9769 41 1 -0.5240 -5.7690 -0.3937 42 1 -0.0280 -6.6850 -2.2009 43 1 0.8448 -7.3071 -0.7799 44 1 1.5751 -9.7745 -3.4127 45 1 0.2753 -9.3543 -2.4346 46 1 2.8572 -3.3607 -1.4025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733108728.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:14 Heat of formation + Delta-G solvation = -58.336277 kcal Electronic energy + Delta-G solvation = -27499.387127 eV Core-core repulsion = 23390.403743 eV Total energy + Delta-G solvation = -4108.983385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.00608 -40.20053 -39.26074 -37.37087 -36.18677 -34.80645 -34.30352 -32.43483 -31.56385 -30.89283 -29.51213 -28.65786 -27.04907 -25.68917 -23.79741 -22.80466 -22.51637 -21.36449 -20.86687 -19.91602 -18.50598 -18.22520 -17.09308 -16.99561 -16.93008 -16.86427 -16.38578 -16.09904 -15.81777 -15.15006 -14.72831 -14.64482 -14.45666 -14.27136 -14.15788 -13.71242 -13.42199 -13.23040 -13.14128 -13.00163 -12.84436 -12.70712 -11.97241 -11.90313 -11.82660 -11.53266 -11.41163 -10.87770 -10.78688 -10.70558 -10.49316 -10.35021 -10.31291 -10.07916 -9.90440 -9.65192 -9.36266 -8.79976 -8.68717 -8.62272 -6.84972 -5.69260 -2.97959 0.58979 1.02728 2.00815 2.12096 2.62572 2.89719 3.32282 3.45804 3.49437 3.53182 3.54789 4.11073 4.22411 4.32904 4.41892 4.43398 4.57333 4.65792 4.73019 4.95129 5.00642 5.09788 5.17413 5.28967 5.44483 5.54461 5.55853 5.62952 5.73997 5.79175 5.92879 5.94267 6.02370 6.10198 6.14278 6.22041 6.35373 6.44583 6.54947 6.62470 6.92097 6.92194 6.94364 7.28664 7.64670 7.75888 8.08656 8.49693 9.60263 10.19226 10.53850 11.53783 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.001981 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.106711 B =14128.084440 C =15737.721844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.607 5.607 3 C 0.118 3.882 4 C -0.140 4.140 5 C 0.157 3.843 6 N -0.733 5.733 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.016 4.016 10 N -0.935 5.935 11 Si 0.909 3.091 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 C 0.556 3.444 16 O -0.523 6.523 17 C -0.083 4.083 18 C -0.131 4.131 19 C -0.087 4.087 20 C -0.193 4.193 21 C 0.122 3.878 22 O -0.287 6.287 23 C 0.039 3.961 24 C 0.518 3.482 25 N -0.851 5.851 26 O -0.512 6.512 27 C -0.091 4.091 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.018 0.982 36 H 0.021 0.979 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.130 0.870 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.409 0.591 45 H 0.403 0.597 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 -27.990 14.299 36.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.340 5.340 3 C -0.004 4.004 4 C -0.179 4.179 5 C 0.028 3.972 6 N -0.377 5.377 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.212 4.212 10 N -0.583 5.583 11 Si 0.740 3.260 12 H -0.213 1.213 13 H -0.217 1.217 14 H -0.213 1.213 15 C 0.343 3.657 16 O -0.399 6.399 17 C -0.086 4.086 18 C -0.150 4.150 19 C -0.105 4.105 20 C -0.212 4.212 21 C 0.077 3.923 22 O -0.199 6.199 23 C -0.040 4.040 24 C 0.301 3.699 25 N -0.418 5.418 26 O -0.386 6.386 27 C -0.111 4.111 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.148 0.852 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.241 0.759 45 H 0.231 0.769 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.597 -27.432 13.993 34.982 hybrid contribution -0.263 0.137 -0.500 0.581 sum -16.860 -27.295 13.493 34.804 Atomic orbital electron populations 1.22172 0.79661 1.04047 1.01365 1.47762 1.07072 1.06124 1.73036 1.21556 0.97671 0.83024 0.98159 1.22072 1.01176 0.99052 0.95579 1.20540 0.96066 0.91815 0.88749 1.42346 1.68347 1.25945 1.01097 1.19209 1.27870 0.98163 0.91789 0.91183 1.24763 1.01772 0.99090 0.95578 1.69662 1.51582 1.38921 0.98165 0.86237 0.79718 0.83239 0.76815 1.21255 1.21706 1.21291 1.18265 0.87065 0.83439 0.76898 1.90835 1.13408 1.87031 1.48650 1.19698 0.95475 0.94161 0.99292 1.21581 0.94103 0.98618 1.00672 1.20862 0.99722 0.92290 0.97592 1.21364 0.96515 1.01191 1.02097 1.18794 0.92886 0.88151 0.92436 1.86200 1.46959 1.21053 1.65731 1.22446 0.95475 0.85144 1.00889 1.20056 0.85555 0.82865 0.81466 1.43648 1.27744 1.15452 1.54999 1.90859 1.21825 1.77775 1.48100 1.20442 1.00848 0.89677 1.00100 0.92305 0.90416 0.90466 0.90219 0.89457 0.91566 0.91908 0.96373 0.96153 0.78307 0.93497 0.84318 0.84985 0.85189 0.88667 0.88702 0.75860 0.76906 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 8.88 59.85 0.53 1.12 16 2 N -0.61 -7.67 2.87 -182.69 -0.52 -8.20 16 3 C 0.12 1.66 5.42 -4.05 -0.02 1.64 16 4 C -0.14 -2.46 5.65 -26.74 -0.15 -2.61 16 5 C 0.16 3.34 6.26 -4.04 -0.03 3.31 16 6 N -0.73 -19.81 5.60 -59.91 -0.34 -20.15 16 7 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 10 N -0.93 -29.47 13.06 55.49 0.72 -28.74 16 11 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 C 0.56 8.18 7.35 -12.33 -0.09 8.09 16 16 O -0.52 -9.88 16.47 5.31 0.09 -9.79 16 17 C -0.08 -0.99 5.23 -104.98 -0.55 -1.54 16 18 C -0.13 -1.08 7.56 -39.17 -0.30 -1.38 16 19 C -0.09 -0.56 10.03 -39.67 -0.40 -0.95 16 20 C -0.19 -1.33 9.03 -39.35 -0.36 -1.69 16 21 C 0.12 1.26 6.68 -39.27 -0.26 1.00 16 22 O -0.29 -3.13 9.67 -39.38 -0.38 -3.51 16 23 C 0.04 0.23 5.22 36.00 0.19 0.41 16 24 C 0.52 3.96 8.18 -10.99 -0.09 3.87 16 25 N -0.85 -2.31 8.87 31.22 0.28 -2.03 16 26 O -0.51 -7.03 17.34 -14.36 -0.25 -7.28 16 27 C -0.09 -1.15 9.57 -39.02 -0.37 -1.52 16 28 H 0.06 0.35 6.90 -51.93 -0.36 -0.01 16 29 H 0.08 0.62 8.04 -51.93 -0.42 0.20 16 30 H 0.08 0.59 5.81 -51.93 -0.30 0.29 16 31 H 0.08 0.93 8.07 -51.93 -0.42 0.51 16 32 H 0.09 1.35 7.36 -51.93 -0.38 0.97 16 33 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.38 10.90 7.67 -40.82 -0.31 10.58 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 39 H 0.14 0.87 5.31 -52.49 -0.28 0.59 16 40 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.13 0.45 6.28 -52.48 -0.33 0.12 16 42 H 0.10 0.27 7.64 -51.93 -0.40 -0.12 16 43 H 0.10 0.26 7.67 -51.93 -0.40 -0.14 16 44 H 0.41 0.93 8.93 -40.82 -0.36 0.57 16 45 H 0.40 -0.42 8.83 -40.82 -0.36 -0.78 16 46 H 0.14 2.04 8.05 -52.49 -0.42 1.61 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -41.18 388.63 -8.11 -49.29 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.40 Total: 4.37 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.14 Total: 1.99 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: 0.14 Total: -59.11 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.54 Total: -20.58 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -41.18 -8.11 -49.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733108728.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.046 kcal (2) G-P(sol) polarization free energy of solvation -41.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds