Wall clock time and date at job start Tue Mar 31 2020 19:02:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.35680 * 117.00118 * 2 1
4 4 C 1.38898 * 119.62578 * 180.29852 * 3 2 1
5 5 C 1.39573 * 118.94738 * 180.26910 * 4 3 2
6 6 C 1.48161 * 120.89055 * 179.71144 * 5 4 3
7 7 O 1.21510 * 119.99995 * 359.72771 * 6 5 4
8 8 N 1.34772 * 119.99785 * 179.72429 * 6 5 4
9 9 C 1.46504 * 119.99944 * 180.02562 * 8 6 5
10 10 C 1.52997 * 109.47061 * 177.10703 * 9 8 6
11 11 N 1.46495 * 109.54699 * 54.89508 * 10 9 8
12 12 C 1.36946 * 119.99667 * 59.05103 * 11 10 9
13 13 H 1.07998 * 120.00097 * 5.86832 * 12 11 10
14 14 C 1.38808 * 119.99814 * 185.86071 * 12 11 10
15 15 N 1.31626 * 120.00059 * 0.02562 * 14 12 11
16 16 Si 1.86797 * 119.99987 * 180.02562 * 14 12 11
17 17 H 1.48507 * 109.47241 * 60.00096 * 16 14 12
18 18 H 1.48502 * 109.47325 * 179.97438 * 16 14 12
19 19 H 1.48501 * 109.47055 * 299.99950 * 16 14 12
20 20 C 1.53182 * 109.61430 * 175.11626 * 10 9 8
21 21 C 1.53088 * 109.16280 * 176.89048 * 20 10 9
22 22 O 1.42903 * 109.41777 * 302.39363 * 21 20 10
23 23 C 1.42901 * 114.09761 * 61.15657 * 22 21 20
24 24 C 1.53092 * 109.41639 * 298.84184 * 23 22 21
25 25 C 1.39966 * 118.21581 * 359.44191 * 5 4 3
26 26 C 1.37979 * 119.13421 * 0.27300 * 25 5 4
27 27 N 1.31908 * 120.97889 * 0.02562 * 26 25 5
28 28 H 1.09001 * 109.47230 * 60.00131 * 1 2 3
29 29 H 1.09000 * 109.47386 * 179.97438 * 1 2 3
30 30 H 1.08997 * 109.47147 * 299.99962 * 1 2 3
31 31 H 1.08001 * 120.52423 * 359.97438 * 4 3 2
32 32 H 0.97002 * 120.00614 * 359.97438 * 8 6 5
33 33 H 1.09005 * 109.46947 * 57.10945 * 9 8 6
34 34 H 1.08997 * 109.46976 * 297.10752 * 9 8 6
35 35 H 0.97000 * 120.00580 * 239.06054 * 11 10 9
36 36 H 0.96996 * 119.99426 * 179.97438 * 15 14 12
37 37 H 1.08993 * 109.52592 * 296.79536 * 20 10 9
38 38 H 1.09007 * 109.52026 * 56.99003 * 20 10 9
39 39 H 1.09001 * 109.48371 * 182.41169 * 21 20 10
40 40 H 1.09003 * 109.49226 * 62.38261 * 21 20 10
41 41 H 1.09004 * 109.48380 * 178.86067 * 23 22 21
42 42 H 1.08997 * 109.49006 * 58.83497 * 23 22 21
43 43 H 1.09004 * 109.52405 * 297.70778 * 24 23 22
44 44 H 1.09000 * 109.57588 * 177.54302 * 24 23 22
45 45 H 1.07997 * 120.43345 * 180.29587 * 25 5 4
46 46 H 1.08002 * 119.50758 * 179.97438 * 26 25 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0450 1.2089 0.0000
4 6 3.4325 1.2725 -0.0063
5 6 4.0514 2.5235 -0.0005
6 6 5.5284 2.6415 -0.0004
7 8 6.2178 1.6409 -0.0005
8 7 6.1071 3.8586 -0.0004
9 6 7.5675 3.9753 -0.0009
10 6 7.9611 5.4520 -0.0735
11 7 7.3159 6.1854 1.0182
12 6 7.5544 5.8276 2.3184
13 1 8.2892 5.0688 2.5435
14 6 6.8519 6.4403 3.3469
15 7 5.9562 7.3649 3.0725
16 14 7.1778 5.9528 5.1204
17 1 8.6013 6.2150 5.4524
18 1 6.3054 6.7486 6.0209
19 1 6.8862 4.5076 5.2981
20 6 9.4822 5.5853 0.0484
21 6 9.8713 7.0581 -0.1033
22 8 9.3994 7.5471 -1.3604
23 6 7.9796 7.4913 -1.5123
24 6 7.5144 6.0359 -1.4174
25 6 3.2395 3.6635 -0.0005
26 6 1.8681 3.5115 -0.0005
27 7 1.3178 2.3127 0.0001
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 -0.3633 0.5138 0.8900
31 1 4.0231 0.3683 -0.0108
32 1 5.5568 4.6574 -0.0007
33 1 7.9738 3.4481 -0.8641
34 1 7.9673 3.5372 0.9137
35 1 6.7196 6.9245 0.8202
36 1 5.4651 7.7928 3.7912
37 1 9.8026 5.2227 1.0250
38 1 9.9631 4.9990 -0.7347
39 1 10.9563 7.1538 -0.0602
40 1 9.4230 7.6377 0.7037
41 1 7.7017 7.8990 -2.4843
42 1 7.5062 8.0765 -0.7240
43 1 7.9557 5.4587 -2.2300
44 1 6.4276 5.9944 -1.4893
45 1 3.6806 4.6493 -0.0009
46 1 1.2358 4.3871 -0.0001
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001733472624.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:02:03
Heat of formation + Delta-G solvation = -66.176616 kcal
Electronic energy + Delta-G solvation = -29720.553093 eV
Core-core repulsion = 25611.229726 eV
Total energy + Delta-G solvation = -4109.323367 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.82914 -39.69659 -38.86483 -37.69231 -35.89941 -33.65393 -32.70397 -32.13390
-30.76609 -30.70661 -29.24238 -27.51434 -27.07180 -24.36677 -24.02321 -23.36041
-23.04680 -21.99870 -20.38323 -18.96774 -18.37990 -17.30143 -17.29696 -16.47641
-16.13795 -15.90269 -15.60765 -15.53780 -15.37381 -14.96931 -14.60550 -14.39766
-14.20940 -14.11824 -13.87869 -13.68693 -13.40269 -13.19869 -12.77815 -12.32028
-12.23925 -12.09419 -11.84520 -11.78465 -11.50473 -11.34207 -10.95772 -10.94215
-10.86202 -10.42316 -10.18807 -10.05194 -9.92696 -9.86752 -9.78434 -9.58673
-9.17708 -8.90001 -8.62543 -8.58216 -7.17857 -5.93486 -3.24336 0.72453
1.08780 2.85980 3.06766 3.35292 3.40492 3.42466 3.51730 3.86342
4.20984 4.31628 4.45917 4.70403 4.94099 5.00158 5.04138 5.10817
5.14932 5.15717 5.19968 5.27841 5.44251 5.47714 5.48724 5.58079
5.62934 5.70579 5.78142 5.93152 6.01488 6.03935 6.05914 6.12602
6.22918 6.24073 6.33227 6.47175 6.49095 6.64957 6.71358 6.87162
7.09069 7.58500 7.65129 7.69704 7.86458 8.23670 8.47117 9.36841
9.85716 10.22561 11.27951
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011206 B = 0.003635 C = 0.003126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2498.049888 B = 7701.395024 C = 8955.493534
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 O -0.307 6.307
3 C 0.312 3.688
4 C -0.135 4.135
5 C -0.045 4.045
6 C 0.552 3.448
7 O -0.543 6.543
8 N -0.686 5.686
9 C 0.118 3.882
10 C 0.189 3.811
11 N -0.713 5.713
12 C -0.240 4.240
13 H 0.070 0.930
14 C -0.003 4.003
15 N -0.929 5.929
16 Si 0.901 3.099
17 H -0.285 1.285
18 H -0.291 1.291
19 H -0.286 1.286
20 C -0.154 4.154
21 C 0.070 3.930
22 O -0.393 6.393
23 C 0.066 3.934
24 C -0.152 4.152
25 C -0.173 4.173
26 C 0.137 3.863
27 N -0.530 5.530
28 H 0.058 0.942
29 H 0.095 0.905
30 H 0.059 0.941
31 H 0.152 0.848
32 H 0.405 0.595
33 H 0.057 0.943
34 H 0.069 0.931
35 H 0.385 0.615
36 H 0.256 0.744
37 H 0.077 0.923
38 H 0.057 0.943
39 H 0.079 0.921
40 H 0.067 0.933
41 H 0.082 0.918
42 H 0.059 0.941
43 H 0.070 0.930
44 H 0.069 0.931
45 H 0.146 0.854
46 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.108 -5.567 -9.623 12.685
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 O -0.214 6.214
3 C 0.133 3.867
4 C -0.157 4.157
5 C -0.056 4.056
6 C 0.337 3.663
7 O -0.421 6.421
8 N -0.336 5.336
9 C -0.007 4.007
10 C 0.097 3.903
11 N -0.356 5.356
12 C -0.370 4.370
13 H 0.088 0.912
14 C -0.199 4.199
15 N -0.576 5.576
16 Si 0.732 3.268
17 H -0.212 1.212
18 H -0.217 1.217
19 H -0.213 1.213
20 C -0.195 4.195
21 C -0.006 4.006
22 O -0.312 6.312
23 C -0.011 4.011
24 C -0.190 4.190
25 C -0.194 4.194
26 C -0.019 4.019
27 N -0.254 5.254
28 H 0.077 0.923
29 H 0.113 0.887
30 H 0.077 0.923
31 H 0.170 0.830
32 H 0.242 0.758
33 H 0.076 0.924
34 H 0.088 0.912
35 H 0.220 0.780
36 H 0.066 0.934
37 H 0.095 0.905
38 H 0.075 0.925
39 H 0.097 0.903
40 H 0.086 0.914
41 H 0.100 0.900
42 H 0.077 0.923
43 H 0.089 0.911
44 H 0.087 0.913
45 H 0.164 0.836
46 H 0.184 0.816
Dipole moment (debyes) X Y Z Total
from point charges -6.235 -6.587 -9.583 13.195
hybrid contribution 0.061 0.423 1.437 1.500
sum -6.174 -6.164 -8.146 11.936
Atomic orbital electron populations
1.22849 0.77263 1.02853 1.02467 1.86246 1.22850 1.24333 1.88003
1.19650 0.88996 0.84792 0.93253 1.21097 0.91773 0.99147 1.03634
1.20244 0.94315 0.93154 0.97879 1.18000 0.86513 0.84082 0.77671
1.90744 1.64149 1.36619 1.50627 1.45643 1.08627 1.07429 1.71919
1.21861 0.78991 0.98619 1.01272 1.19842 0.92223 0.89847 0.88412
1.42493 1.54744 1.37490 1.00830 1.19013 1.17291 1.18039 0.82701
0.91219 1.24670 0.98469 0.99041 0.97741 1.69623 1.27739 1.28697
1.31587 0.86373 0.77475 0.77840 0.85129 1.21201 1.21723 1.21276
1.22484 0.97383 0.97467 1.02152 1.22449 0.98206 0.94041 0.85947
1.87807 1.21565 1.84587 1.37202 1.22460 0.81867 0.95500 1.01266
1.22368 1.01212 0.97742 0.97687 1.22278 0.94909 0.99454 1.02716
1.22360 0.92641 0.93511 0.93341 1.67167 1.41252 0.98941 1.18073
0.92321 0.88692 0.92259 0.82988 0.75784 0.92430 0.91223 0.78024
0.93374 0.90463 0.92478 0.90294 0.91435 0.89969 0.92303 0.91114
0.91265 0.83608 0.81649
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.38 10.38 101.05 1.05 1.43 16
2 O -0.31 -3.97 10.47 -18.74 -0.20 -4.16 16
3 C 0.31 4.42 7.49 -17.16 -0.13 4.29 16
4 C -0.13 -2.02 9.61 -38.84 -0.37 -2.39 16
5 C -0.05 -0.69 5.91 -104.68 -0.62 -1.31 16
6 C 0.55 9.71 7.80 -12.19 -0.10 9.61 16
7 O -0.54 -11.04 16.44 5.36 0.09 -10.95 16
8 N -0.69 -11.47 5.09 -61.15 -0.31 -11.78 16
9 C 0.12 2.04 4.32 -4.04 -0.02 2.03 16
10 C 0.19 3.16 0.41 -131.64 -0.05 3.11 16
11 N -0.71 -14.50 3.66 -47.06 -0.17 -14.67 16
12 C -0.24 -5.73 8.70 -15.06 -0.13 -5.86 16
13 H 0.07 1.69 6.76 -52.49 -0.35 1.33 16
14 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16
15 N -0.93 -24.93 13.07 55.49 0.73 -24.21 16
16 Si 0.90 21.22 29.55 -169.99 -5.02 16.19 16
17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16
20 C -0.15 -2.52 4.83 -26.59 -0.13 -2.64 16
21 C 0.07 1.15 6.68 37.20 0.25 1.39 16
22 O -0.39 -6.45 10.77 -35.23 -0.38 -6.83 16
23 C 0.07 0.97 6.67 37.20 0.25 1.22 16
24 C -0.15 -2.17 4.80 -26.59 -0.13 -2.30 16
25 C -0.17 -2.28 9.61 -39.03 -0.38 -2.65 16
26 C 0.14 1.65 11.17 -17.61 -0.20 1.46 16
27 N -0.53 -7.12 9.18 -13.38 -0.12 -7.24 16
28 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16
29 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16
30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16
31 H 0.15 2.25 7.74 -52.49 -0.41 1.85 16
32 H 0.40 6.45 5.54 -40.82 -0.23 6.23 16
33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
34 H 0.07 1.37 7.53 -51.93 -0.39 0.98 16
35 H 0.38 8.37 6.71 -40.82 -0.27 8.10 16
36 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
37 H 0.08 1.35 7.15 -51.93 -0.37 0.97 16
38 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16
39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
40 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16
41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16
42 H 0.06 0.95 7.08 -51.93 -0.37 0.59 16
43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
44 H 0.07 0.92 7.35 -51.93 -0.38 0.54 16
45 H 0.15 1.76 6.53 -52.49 -0.34 1.42 16
46 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16
LS Contribution 374.99 15.07 5.65 5.65
Total: -1.00 -29.46 374.99 -6.99 -36.45
By element:
Atomic # 1 Polarization: 20.80 SS G_CDS: -6.45 Total: 14.35 kcal
Atomic # 6 Polarization: 8.01 SS G_CDS: -0.80 Total: 7.21 kcal
Atomic # 7 Polarization: -58.03 SS G_CDS: 0.12 Total: -57.91 kcal
Atomic # 8 Polarization: -21.45 SS G_CDS: -0.49 Total: -21.94 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -29.46 -6.99 -36.45 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733472624.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.729 kcal
(2) G-P(sol) polarization free energy of solvation -29.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.186 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.447 kcal
(6) G-S(sol) free energy of system = (1) + (5) -66.177 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds