Wall clock time and date at job start Tue Mar 31 2020 18:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35573 * 118.80884 * 2 1 4 4 C 1.34862 * 121.79966 * 179.97438 * 3 2 1 5 5 C 1.41672 * 119.34202 * 0.02562 * 4 3 2 6 6 O 1.22082 * 121.06988 * 179.97438 * 5 4 3 7 7 C 1.47099 * 117.85724 * 0.02562 * 5 4 3 8 8 C 1.47298 * 120.87778 * 180.02562 * 7 5 4 9 9 O 1.21616 * 119.99749 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99834 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99771 * 174.40676 * 10 8 7 12 12 C 1.52999 * 109.49603 * 61.71453 * 11 10 8 13 13 O 1.42907 * 109.47206 * 55.18643 * 12 11 10 14 14 C 1.53043 * 109.49871 * 301.65070 * 11 10 8 15 15 C 1.53040 * 109.53782 * 301.41158 * 14 11 10 16 16 C 1.53197 * 109.31239 * 298.64098 * 15 14 11 17 17 N 1.46915 * 108.77830 * 54.63178 * 16 15 14 18 18 C 1.36938 * 120.63309 * 126.41829 * 17 16 15 19 19 H 1.08010 * 119.99549 * 328.88925 * 18 17 16 20 20 C 1.38807 * 120.00423 * 148.88749 * 18 17 16 21 21 N 1.31627 * 120.00003 * 162.76353 * 20 18 17 22 22 Si 1.86795 * 120.00106 * 342.76871 * 20 18 17 23 23 H 1.48499 * 109.47364 * 91.45913 * 22 20 18 24 24 H 1.48500 * 109.47308 * 211.45758 * 22 20 18 25 25 H 1.48501 * 109.47094 * 331.45897 * 22 20 18 26 26 C 1.46998 * 118.75887 * 306.39183 * 17 16 15 27 27 C 1.34348 * 118.80174 * 180.30102 * 2 1 3 28 28 H 1.08990 * 109.47071 * 89.99977 * 1 2 3 29 29 H 1.08998 * 109.47463 * 210.00286 * 1 2 3 30 30 H 1.09006 * 109.46611 * 330.00081 * 1 2 3 31 31 H 1.08003 * 119.10212 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.33419 * 180.02562 * 4 3 2 33 33 H 0.97001 * 120.00314 * 354.68882 * 10 8 7 34 34 H 1.09000 * 109.47468 * 175.18633 * 12 11 10 35 35 H 1.09002 * 109.47117 * 295.18747 * 12 11 10 36 36 H 0.96697 * 113.99995 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46213 * 61.43396 * 14 11 10 38 38 H 1.09006 * 109.45747 * 181.39304 * 14 11 10 39 39 H 1.08999 * 109.49370 * 58.58507 * 15 14 11 40 40 H 1.08992 * 109.49836 * 178.65074 * 15 14 11 41 41 H 1.09002 * 109.58313 * 174.42255 * 16 15 14 42 42 H 1.09002 * 109.58232 * 294.70127 * 16 15 14 43 43 H 0.97002 * 119.99640 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58112 * 293.83306 * 26 17 16 45 45 H 1.08996 * 109.63375 * 173.38002 * 26 17 16 46 46 H 1.08006 * 119.81643 * 0.03045 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1184 1.1879 0.0000 4 6 3.4651 1.2583 0.0005 5 6 4.2229 0.0612 0.0005 6 8 5.4434 0.0881 0.0005 7 6 3.4916 -1.2151 -0.0006 8 6 4.2127 -2.4995 -0.0001 9 8 5.4288 -2.5140 0.0017 10 7 3.5249 -3.6585 -0.0007 11 6 4.2370 -4.9328 -0.1238 12 6 5.1853 -5.1048 1.0645 13 8 4.4488 -4.9833 2.2831 14 6 5.0419 -4.9445 -1.4255 15 6 4.0982 -4.7389 -2.6126 16 6 3.0856 -5.8876 -2.6598 17 7 2.4086 -5.9749 -1.3588 18 6 1.0416 -5.9559 -1.2810 19 1 0.4668 -5.4047 -2.0106 20 6 0.3945 -6.6451 -0.2645 21 7 -0.8593 -6.3674 0.0243 22 14 1.3032 -7.9664 0.6935 23 1 1.9404 -7.3604 1.8901 24 1 0.3435 -9.0157 1.1217 25 1 2.3480 -8.5735 -0.1697 26 6 3.2261 -6.0838 -0.1420 27 6 2.1123 -1.1773 -0.0062 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5139 31 1 1.5446 2.1030 -0.0004 32 1 3.9612 2.2176 0.0009 33 1 2.5580 -3.6487 0.0764 34 1 5.6512 -6.0891 1.0181 35 1 5.9567 -4.3356 1.0280 36 1 4.9877 -5.0821 3.0799 37 1 5.7787 -4.1416 -1.4041 38 1 5.5517 -5.9024 -1.5285 39 1 3.5696 -3.7926 -2.4975 40 1 4.6749 -4.7234 -3.5374 41 1 2.3511 -5.6953 -3.4418 42 1 3.6042 -6.8235 -2.8678 43 1 -1.3113 -6.8488 0.7349 44 1 3.7566 -7.0360 -0.1422 45 1 2.5847 -6.0206 0.7370 46 1 1.5499 -2.0993 -0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733591867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:51 Heat of formation + Delta-G solvation = -45.097898 kcal Electronic energy + Delta-G solvation = -31217.966711 eV Core-core repulsion = 27109.557385 eV Total energy + Delta-G solvation = -4108.409326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01257 -39.78273 -37.91292 -37.03448 -36.01117 -33.72259 -32.88963 -32.48237 -31.85725 -30.71432 -29.77087 -26.99034 -25.50038 -25.28106 -24.72715 -22.79224 -22.47501 -21.23577 -20.22331 -18.84499 -18.07707 -17.27402 -16.99885 -16.85025 -16.62527 -15.87884 -15.82231 -15.24399 -14.80033 -14.63617 -14.45679 -14.11217 -13.93489 -13.68780 -13.55244 -13.36151 -13.19534 -13.19009 -12.72115 -12.65771 -12.39413 -12.33792 -12.11866 -12.01559 -11.75059 -11.54412 -11.18174 -10.69297 -10.48305 -10.27743 -10.05894 -9.81019 -9.76873 -9.65775 -9.55757 -9.31039 -8.83462 -8.64316 -8.35973 -7.88844 -6.99112 -6.06357 -3.46058 0.95049 1.35760 2.36774 3.32931 3.33862 3.45325 3.47111 3.65841 4.11088 4.18754 4.43562 4.46289 4.57911 4.65678 4.87123 4.88198 4.92672 5.10875 5.20809 5.23319 5.36161 5.46642 5.53099 5.61961 5.65751 5.70557 5.78216 5.84348 5.95616 6.18862 6.22779 6.27648 6.36126 6.38392 6.45580 6.54930 6.60053 6.65837 6.74978 6.78987 6.93681 7.19441 7.89371 7.98984 8.22943 8.23368 8.29315 8.84548 8.90950 9.62112 10.03190 11.09082 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.005084 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.997564 B = 5505.795025 C = 6544.163169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.474 5.474 3 C 0.128 3.872 4 C -0.275 4.275 5 C 0.407 3.593 6 O -0.486 6.486 7 C -0.297 4.297 8 C 0.576 3.424 9 O -0.527 6.527 10 N -0.695 5.695 11 C 0.172 3.828 12 C 0.063 3.937 13 O -0.563 6.563 14 C -0.123 4.123 15 C -0.128 4.128 16 C 0.146 3.854 17 N -0.605 5.605 18 C -0.263 4.263 19 H 0.085 0.915 20 C 0.029 3.971 21 N -0.909 5.909 22 Si 0.878 3.122 23 H -0.280 1.280 24 H -0.304 1.304 25 H -0.271 1.271 26 C 0.128 3.872 27 C 0.175 3.825 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.162 0.838 32 H 0.150 0.850 33 H 0.402 0.598 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.370 0.630 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.263 0.737 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.702 12.150 0.707 12.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.160 5.160 3 C 0.003 3.997 4 C -0.299 4.299 5 C 0.293 3.707 6 O -0.367 6.367 7 C -0.308 4.308 8 C 0.363 3.637 9 O -0.404 6.404 10 N -0.347 5.347 11 C 0.083 3.917 12 C -0.017 4.017 13 O -0.367 6.367 14 C -0.161 4.161 15 C -0.167 4.167 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.391 4.391 19 H 0.103 0.897 20 C -0.170 4.170 21 N -0.552 5.552 22 Si 0.709 3.291 23 H -0.207 1.207 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.002 3.998 27 C 0.045 3.955 28 H 0.101 0.899 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.179 0.821 32 H 0.168 0.832 33 H 0.238 0.762 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.215 0.785 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.040 0.960 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.337 12.194 0.340 12.420 hybrid contribution 0.133 -0.939 1.034 1.403 sum 2.470 11.255 1.374 11.604 Atomic orbital electron populations 1.22540 0.75906 1.05776 1.04659 1.42706 1.08783 1.04446 1.60072 1.21679 0.94306 0.88428 0.95257 1.22448 0.93166 1.01327 1.12972 1.18174 0.89244 0.86992 0.76249 1.90792 1.14337 1.89021 1.42586 1.22596 0.92162 0.97433 1.18582 1.17398 0.87097 0.82487 0.76732 1.90717 1.12985 1.86967 1.49780 1.45686 1.10610 1.04399 1.73955 1.20847 0.92836 0.85295 0.92709 1.22701 0.94645 0.99776 0.84545 1.86526 1.38894 1.95996 1.15266 1.21760 0.98369 1.02266 0.93754 1.21903 0.97693 1.00596 0.96555 1.20999 0.93926 0.94658 0.88371 1.44371 1.02765 1.86228 0.99507 1.18879 0.79702 1.26416 1.14139 0.89745 1.25348 0.95098 0.97955 0.98621 1.69778 1.11356 1.42381 1.31692 0.86997 0.78902 0.83007 0.80237 1.20716 1.23231 1.19625 1.21622 0.92990 0.93559 0.91672 1.22485 0.93526 0.89304 0.90216 0.89896 0.88382 0.89169 0.82083 0.83249 0.76179 0.93938 0.91321 0.78472 0.90382 0.91903 0.92105 0.92686 0.91971 0.95979 0.92731 0.94501 0.89607 0.81038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.27 10.53 59.85 0.63 0.90 16 2 N -0.47 -4.21 2.97 -124.40 -0.37 -4.58 16 3 C 0.13 1.05 10.17 -17.10 -0.17 0.88 16 4 C -0.27 -3.29 10.01 -39.47 -0.40 -3.69 16 5 C 0.41 7.12 6.96 -34.68 -0.24 6.88 16 6 O -0.49 -10.72 16.41 -15.17 -0.25 -10.97 16 7 C -0.30 -4.94 6.05 -102.71 -0.62 -5.56 16 8 C 0.58 11.15 7.14 -12.58 -0.09 11.06 16 9 O -0.53 -11.82 11.88 -14.75 -0.18 -12.00 16 10 N -0.69 -12.88 3.90 -48.59 -0.19 -13.07 16 11 C 0.17 3.25 0.45 -131.70 -0.06 3.19 16 12 C 0.06 1.11 5.67 37.16 0.21 1.32 16 13 O -0.56 -9.91 13.07 -35.23 -0.46 -10.37 16 14 C -0.12 -2.20 4.45 -26.69 -0.12 -2.31 16 15 C -0.13 -2.23 5.93 -26.61 -0.16 -2.39 16 16 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 17 N -0.61 -13.40 2.64 -172.26 -0.45 -13.85 16 18 C -0.26 -6.69 10.02 -15.06 -0.15 -6.84 16 19 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 20 C 0.03 0.79 5.27 -17.43 -0.09 0.69 16 21 N -0.91 -25.68 13.97 55.49 0.78 -24.90 16 22 Si 0.88 21.64 24.33 -169.99 -4.14 17.51 16 23 H -0.28 -6.84 6.63 56.52 0.37 -6.47 16 24 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 25 H -0.27 -6.65 6.60 56.52 0.37 -6.27 16 26 C 0.13 2.72 2.73 -3.67 -0.01 2.71 16 27 C 0.18 2.18 9.79 -16.54 -0.16 2.02 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.54 7.96 -51.93 -0.41 0.13 16 30 H 0.09 0.22 7.96 -51.93 -0.41 -0.19 16 31 H 0.16 0.59 7.97 -52.48 -0.42 0.17 16 32 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.40 7.43 6.57 -40.82 -0.27 7.16 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.29 6.26 -51.93 -0.33 0.96 16 36 H 0.37 4.70 9.12 45.56 0.42 5.12 16 37 H 0.08 1.49 6.29 -51.93 -0.33 1.16 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.12 7.50 -51.93 -0.39 0.73 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 44 H 0.04 0.80 6.96 -51.93 -0.36 0.44 16 45 H 0.09 2.03 4.57 -51.93 -0.24 1.79 16 46 H 0.17 2.04 6.37 -52.48 -0.33 1.71 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -37.33 361.79 -6.90 -44.23 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -5.63 Total: 10.93 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.46 Total: 11.62 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.24 Total: -56.40 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -0.88 Total: -33.34 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.33 -6.90 -44.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733591867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.869 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds