Wall clock time and date at job start Tue Mar 31 2020 18:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.35573 * 118.80884 * 2 1 4 4 C 1.34862 * 121.79966 * 179.97438 * 3 2 1 5 5 C 1.41672 * 119.34202 * 0.02562 * 4 3 2 6 6 O 1.22082 * 121.06988 * 179.97438 * 5 4 3 7 7 C 1.47099 * 117.85724 * 0.02562 * 5 4 3 8 8 C 1.47298 * 120.87778 * 180.02562 * 7 5 4 9 9 O 1.21616 * 119.99749 * 0.02562 * 8 7 5 10 10 N 1.34774 * 119.99834 * 179.97438 * 8 7 5 11 11 C 1.46502 * 119.99771 * 174.40676 * 10 8 7 12 12 C 1.52999 * 109.49603 * 61.71453 * 11 10 8 13 13 O 1.42907 * 109.47206 * 55.18643 * 12 11 10 14 14 C 1.53043 * 109.49871 * 301.65070 * 11 10 8 15 15 C 1.53040 * 109.53782 * 301.41158 * 14 11 10 16 16 C 1.53197 * 109.31239 * 298.64098 * 15 14 11 17 17 N 1.46915 * 108.77830 * 54.63178 * 16 15 14 18 18 C 1.36938 * 120.63309 * 126.41829 * 17 16 15 19 19 H 1.08010 * 119.99549 * 328.88925 * 18 17 16 20 20 C 1.38807 * 120.00423 * 148.88749 * 18 17 16 21 21 N 1.31627 * 120.00003 * 162.76353 * 20 18 17 22 22 Si 1.86795 * 120.00106 * 342.76871 * 20 18 17 23 23 H 1.48499 * 109.47364 * 91.45913 * 22 20 18 24 24 H 1.48500 * 109.47308 * 211.45758 * 22 20 18 25 25 H 1.48501 * 109.47094 * 331.45897 * 22 20 18 26 26 C 1.46998 * 118.75887 * 306.39183 * 17 16 15 27 27 C 1.34348 * 118.80174 * 180.30102 * 2 1 3 28 28 H 1.08990 * 109.47071 * 89.99977 * 1 2 3 29 29 H 1.08998 * 109.47463 * 210.00286 * 1 2 3 30 30 H 1.09006 * 109.46611 * 330.00081 * 1 2 3 31 31 H 1.08003 * 119.10212 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.33419 * 180.02562 * 4 3 2 33 33 H 0.97001 * 120.00314 * 354.68882 * 10 8 7 34 34 H 1.09000 * 109.47468 * 175.18633 * 12 11 10 35 35 H 1.09002 * 109.47117 * 295.18747 * 12 11 10 36 36 H 0.96697 * 113.99995 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.46213 * 61.43396 * 14 11 10 38 38 H 1.09006 * 109.45747 * 181.39304 * 14 11 10 39 39 H 1.08999 * 109.49370 * 58.58507 * 15 14 11 40 40 H 1.08992 * 109.49836 * 178.65074 * 15 14 11 41 41 H 1.09002 * 109.58313 * 174.42255 * 16 15 14 42 42 H 1.09002 * 109.58232 * 294.70127 * 16 15 14 43 43 H 0.97002 * 119.99640 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.58112 * 293.83306 * 26 17 16 45 45 H 1.08996 * 109.63375 * 173.38002 * 26 17 16 46 46 H 1.08006 * 119.81643 * 0.03045 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1184 1.1879 0.0000 4 6 3.4651 1.2583 0.0005 5 6 4.2229 0.0612 0.0005 6 8 5.4434 0.0881 0.0005 7 6 3.4916 -1.2151 -0.0006 8 6 4.2127 -2.4995 -0.0001 9 8 5.4288 -2.5140 0.0017 10 7 3.5249 -3.6585 -0.0007 11 6 4.2370 -4.9328 -0.1238 12 6 5.1853 -5.1048 1.0645 13 8 4.4488 -4.9833 2.2831 14 6 5.0419 -4.9445 -1.4255 15 6 4.0982 -4.7389 -2.6126 16 6 3.0856 -5.8876 -2.6598 17 7 2.4086 -5.9749 -1.3588 18 6 1.0416 -5.9559 -1.2810 19 1 0.4668 -5.4047 -2.0106 20 6 0.3945 -6.6451 -0.2645 21 7 -0.8593 -6.3674 0.0243 22 14 1.3032 -7.9664 0.6935 23 1 1.9404 -7.3604 1.8901 24 1 0.3435 -9.0157 1.1217 25 1 2.3480 -8.5735 -0.1697 26 6 3.2261 -6.0838 -0.1420 27 6 2.1123 -1.1773 -0.0062 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5139 31 1 1.5446 2.1030 -0.0004 32 1 3.9612 2.2176 0.0009 33 1 2.5580 -3.6487 0.0764 34 1 5.6512 -6.0891 1.0181 35 1 5.9567 -4.3356 1.0280 36 1 4.9877 -5.0821 3.0799 37 1 5.7787 -4.1416 -1.4041 38 1 5.5517 -5.9024 -1.5285 39 1 3.5696 -3.7926 -2.4975 40 1 4.6749 -4.7234 -3.5374 41 1 2.3511 -5.6953 -3.4418 42 1 3.6042 -6.8235 -2.8678 43 1 -1.3113 -6.8488 0.7349 44 1 3.7566 -7.0360 -0.1422 45 1 2.5847 -6.0206 0.7370 46 1 1.5499 -2.0993 -0.0115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733591867.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:50 Heat of formation + Delta-G solvation = -74.146945 kcal Electronic energy + Delta-G solvation = -31219.226372 eV Core-core repulsion = 27109.557385 eV Total energy + Delta-G solvation = -4109.668987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08638 -41.16737 -39.20982 -38.49934 -37.46346 -35.39036 -34.43359 -33.49429 -33.14544 -32.46471 -31.16686 -27.70234 -27.25696 -26.86381 -25.80459 -24.18047 -23.87483 -22.58042 -21.75438 -20.32895 -19.34096 -18.73932 -18.31952 -18.19451 -17.80143 -17.27601 -16.72012 -16.69475 -16.39219 -16.02626 -15.62303 -15.49904 -15.43142 -15.26387 -15.00688 -14.81278 -14.51989 -14.32125 -14.14834 -13.99821 -13.79163 -13.50567 -13.39562 -13.22681 -13.18887 -12.76791 -12.68480 -12.46134 -12.20323 -11.91956 -11.75070 -11.49483 -11.35002 -11.18535 -10.76674 -10.66521 -10.60681 -10.16028 -9.85687 -8.99813 -8.85404 -8.13637 -5.48442 -0.13493 0.40779 1.36990 1.44590 1.49871 1.56702 2.02412 2.26345 2.44665 2.87316 3.08808 3.23718 3.33703 3.35880 3.67414 3.81419 3.88076 3.96902 3.98026 4.17231 4.22296 4.31739 4.40699 4.42865 4.48810 4.53908 4.61325 4.68055 4.72006 4.78696 4.84202 4.88387 4.89038 4.90958 5.05374 5.11554 5.26603 5.36492 5.44604 5.69050 5.72722 5.85826 5.92921 6.18605 6.76394 6.83191 6.93034 7.12350 7.46425 7.63574 8.08388 9.04595 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011792 B = 0.005084 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.997564 B = 5505.795025 C = 6544.163169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.459 5.459 3 C 0.165 3.835 4 C -0.300 4.300 5 C 0.386 3.614 6 O -0.563 6.563 7 C -0.346 4.346 8 C 0.573 3.427 9 O -0.567 6.567 10 N -0.691 5.691 11 C 0.169 3.831 12 C 0.067 3.933 13 O -0.580 6.580 14 C -0.119 4.119 15 C -0.118 4.118 16 C 0.145 3.855 17 N -0.613 5.613 18 C -0.240 4.240 19 H 0.066 0.934 20 C -0.014 4.014 21 N -0.944 5.944 22 Si 0.925 3.075 23 H -0.279 1.279 24 H -0.315 1.315 25 H -0.266 1.266 26 C 0.134 3.866 27 C 0.208 3.792 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.132 0.868 31 H 0.228 0.772 32 H 0.165 0.835 33 H 0.400 0.600 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.390 0.610 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.046 0.954 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.035 0.965 43 H 0.260 0.740 44 H 0.040 0.960 45 H 0.064 0.936 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.048 13.418 0.379 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.141 5.141 3 C 0.040 3.960 4 C -0.323 4.323 5 C 0.279 3.721 6 O -0.451 6.451 7 C -0.357 4.357 8 C 0.362 3.638 9 O -0.447 6.447 10 N -0.342 5.342 11 C 0.080 3.920 12 C -0.012 4.012 13 O -0.387 6.387 14 C -0.157 4.157 15 C -0.157 4.157 16 C 0.021 3.979 17 N -0.337 5.337 18 C -0.369 4.369 19 H 0.083 0.917 20 C -0.210 4.210 21 N -0.590 5.590 22 Si 0.755 3.245 23 H -0.206 1.206 24 H -0.244 1.244 25 H -0.191 1.191 26 C 0.008 3.992 27 C 0.073 3.927 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.150 0.850 31 H 0.245 0.755 32 H 0.182 0.818 33 H 0.236 0.764 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.239 0.761 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.652 13.479 0.009 13.495 hybrid contribution 0.439 -1.251 1.102 1.724 sum 1.092 12.228 1.111 12.326 Atomic orbital electron populations 1.22975 0.72583 1.07822 1.06356 1.43260 1.10765 1.03684 1.56411 1.22514 0.93393 0.89821 0.90260 1.22400 0.94607 0.99749 1.15537 1.18905 0.88931 0.88988 0.75302 1.90741 1.16960 1.89957 1.47439 1.22398 0.93825 0.96137 1.23333 1.17807 0.86826 0.83396 0.75738 1.90682 1.14707 1.87564 1.51791 1.45629 1.10312 1.04327 1.73922 1.20853 0.92528 0.84597 0.93983 1.22609 0.93900 1.00379 0.84301 1.86469 1.39971 1.96101 1.16198 1.21726 0.98022 1.02610 0.93355 1.21798 0.97239 0.99067 0.97559 1.21122 0.94197 0.95809 0.86809 1.44450 1.01881 1.86263 1.01065 1.18795 0.81080 1.24454 1.12578 0.91674 1.25742 0.95597 0.99676 1.00015 1.69860 1.12610 1.43658 1.32856 0.86253 0.77774 0.80998 0.79458 1.20643 1.24417 1.19127 1.21494 0.92825 0.94550 0.90345 1.22449 0.92061 0.91065 0.87156 0.88320 0.88731 0.84970 0.75542 0.81774 0.76383 0.91850 0.92711 0.76148 0.91778 0.90191 0.93479 0.90204 0.91794 0.94656 0.93067 0.94216 0.91822 0.80541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.53 127.77 1.34 1.55 16 2 N -0.46 -6.33 2.97 -547.48 -1.63 -7.96 16 3 C 0.17 1.96 10.17 83.34 0.85 2.81 16 4 C -0.30 -6.74 10.01 22.34 0.22 -6.52 16 5 C 0.39 14.06 6.96 25.45 0.18 14.24 16 6 O -0.56 -26.82 16.41 13.56 0.22 -26.60 16 7 C -0.35 -11.82 6.05 -18.63 -0.11 -11.93 16 8 C 0.57 23.12 7.14 86.63 0.62 23.74 16 9 O -0.57 -26.97 11.88 15.06 0.18 -26.79 16 10 N -0.69 -26.01 3.90 -425.91 -1.66 -27.68 16 11 C 0.17 6.35 0.45 3.68 0.00 6.35 16 12 C 0.07 2.37 5.67 71.98 0.41 2.78 16 13 O -0.58 -20.32 13.07 -148.98 -1.95 -22.27 16 14 C -0.12 -4.16 4.45 30.62 0.14 -4.02 16 15 C -0.12 -3.95 5.93 30.67 0.18 -3.77 16 16 C 0.15 5.32 6.52 86.37 0.56 5.89 16 17 N -0.61 -26.50 2.64 -698.92 -1.84 -28.34 16 18 C -0.24 -12.08 10.02 84.03 0.84 -11.24 16 19 H 0.07 3.52 8.06 -2.91 -0.02 3.50 16 20 C -0.01 -0.75 5.27 84.86 0.45 -0.31 16 21 N -0.94 -53.54 13.97 21.65 0.30 -53.23 16 22 Si 0.92 44.50 24.33 68.60 1.67 46.17 16 23 H -0.28 -13.30 6.63 99.48 0.66 -12.64 16 24 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 25 H -0.27 -12.47 6.60 99.48 0.66 -11.82 16 26 C 0.13 5.57 2.73 86.35 0.24 5.81 16 27 C 0.21 4.87 9.79 84.25 0.82 5.70 16 28 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.09 0.66 7.96 -2.39 -0.02 0.64 16 30 H 0.13 -0.30 7.96 -2.38 -0.02 -0.32 16 31 H 0.23 -0.15 7.97 -2.91 -0.02 -0.17 16 32 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.40 14.96 6.57 -92.71 -0.61 14.35 16 34 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.05 2.11 6.26 -2.39 -0.01 2.09 16 36 H 0.39 9.74 9.12 -74.06 -0.68 9.06 16 37 H 0.06 2.48 6.29 -2.39 -0.02 2.47 16 38 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 39 H 0.05 1.71 7.50 -2.39 -0.02 1.69 16 40 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.31 7.93 -2.39 -0.02 2.30 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.26 14.32 8.31 -92.71 -0.77 13.54 16 44 H 0.04 1.65 6.96 -2.39 -0.02 1.63 16 45 H 0.06 2.96 4.57 -2.39 -0.01 2.95 16 46 H 0.18 4.00 6.37 -2.91 -0.02 3.98 16 Total: -1.00 -87.65 361.79 1.69 -85.96 By element: Atomic # 1 Polarization: 30.01 SS G_CDS: -0.35 Total: 29.66 kcal Atomic # 6 Polarization: 24.34 SS G_CDS: 6.74 Total: 31.08 kcal Atomic # 7 Polarization: -112.38 SS G_CDS: -4.83 Total: -117.20 kcal Atomic # 8 Polarization: -74.12 SS G_CDS: -1.55 Total: -75.66 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.67 Total: 46.17 kcal Total: -87.65 1.69 -85.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733591867.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.817 kcal (2) G-P(sol) polarization free energy of solvation -87.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds