Wall clock time and date at job start Tue Mar 31 2020 19:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36015 * 117.00050 * 2 1 4 4 C 1.35847 * 120.31251 * 359.97438 * 3 2 1 5 5 N 1.35437 * 120.77723 * 179.74723 * 4 3 2 6 6 H 0.97005 * 119.30113 * 180.26974 * 5 4 3 7 7 C 1.36427 * 121.40742 * 0.55640 * 5 4 3 8 8 C 1.48074 * 119.71796 * 179.71354 * 7 5 4 9 9 O 1.21522 * 119.99685 * 134.73763 * 8 7 5 10 10 N 1.34775 * 120.00511 * 314.73610 * 8 7 5 11 11 C 1.46932 * 120.62688 * 4.08251 * 10 8 7 12 12 C 1.53184 * 108.77683 * 233.58506 * 11 10 8 13 13 C 1.53045 * 109.31030 * 305.36555 * 12 11 10 14 14 C 1.53077 * 109.65762 * 61.30186 * 13 12 11 15 15 C 1.46922 * 120.63555 * 184.05633 * 10 8 7 16 16 H 1.08999 * 109.58869 * 246.34990 * 15 10 8 17 17 C 1.53002 * 109.58542 * 6.62663 * 15 10 8 18 18 N 1.46499 * 109.47448 * 285.21341 * 17 15 10 19 19 C 1.36936 * 119.99985 * 185.30859 * 18 17 15 20 20 H 1.07996 * 119.99805 * 359.72855 * 19 18 17 21 21 C 1.38808 * 119.99651 * 179.72033 * 19 18 17 22 22 N 1.31614 * 120.00361 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99744 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47433 * 60.00282 * 23 21 19 25 25 H 1.48501 * 109.47248 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46980 * 299.99953 * 23 21 19 27 27 C 1.36177 * 120.56385 * 359.44333 * 7 5 4 28 28 C 1.41570 * 120.31566 * 180.02562 * 3 2 1 29 29 O 1.22267 * 120.65684 * 359.97438 * 28 3 2 30 30 H 1.08994 * 109.47647 * 59.99902 * 1 2 3 31 31 H 1.09009 * 109.47338 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47197 * 299.99570 * 1 2 3 33 33 H 1.08005 * 119.61340 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.58555 * 353.37272 * 11 10 8 35 35 H 1.08999 * 109.58431 * 113.65449 * 11 10 8 36 36 H 1.09004 * 109.49953 * 65.31290 * 12 11 10 37 37 H 1.08993 * 109.50288 * 185.41259 * 12 11 10 38 38 H 1.08999 * 109.45884 * 181.38388 * 13 12 11 39 39 H 1.08992 * 109.46168 * 301.35242 * 13 12 11 40 40 H 1.09006 * 109.62115 * 178.83121 * 14 13 12 41 41 H 1.08996 * 109.39470 * 58.72105 * 14 13 12 42 42 H 1.09002 * 109.46896 * 165.20838 * 17 15 10 43 43 H 1.09008 * 109.46847 * 45.21757 * 17 15 10 44 44 H 0.96998 * 119.99506 * 5.03288 * 18 17 15 45 45 H 0.97002 * 120.00298 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.40665 * 180.29763 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 -0.0005 5 7 1.9179 3.5669 0.0046 6 1 1.3732 4.3696 0.0081 7 6 3.2772 3.6828 -0.0009 8 6 3.8994 5.0265 -0.0014 9 8 4.8299 5.2655 0.7427 10 7 3.4337 5.9845 -0.8271 11 6 2.2537 5.7395 -1.6677 12 6 2.6115 6.0543 -3.1235 13 6 3.1617 7.4797 -3.2126 14 6 4.4326 7.5948 -2.3671 15 6 4.0958 7.2939 -0.9033 16 1 3.4285 8.0639 -0.5161 17 6 5.3825 7.2669 -0.0760 18 7 5.0479 7.3197 1.3493 19 6 6.0445 7.4169 2.2834 20 1 7.0773 7.4502 1.9696 21 6 5.7270 7.4727 3.6336 22 7 4.4683 7.4318 4.0160 23 14 7.0865 7.6060 4.9078 24 1 7.8669 8.8470 4.6712 25 1 6.4889 7.6481 6.2667 26 1 7.9843 6.4281 4.7988 27 6 4.0668 2.5733 -0.0003 28 6 3.4598 1.2938 -0.0005 29 8 4.1430 0.2798 -0.0006 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 0.2343 2.2973 -0.0005 34 1 1.9550 4.6947 -1.5825 35 1 1.4345 6.3814 -1.3435 36 1 3.3668 5.3503 -3.4730 37 1 1.7195 5.9693 -3.7440 38 1 3.3942 7.7149 -4.2512 39 1 2.4154 8.1810 -2.8397 40 1 4.8355 8.6045 -2.4475 41 1 5.1717 6.8781 -2.7251 42 1 6.0000 8.1266 -0.3364 43 1 5.9308 6.3487 -0.2868 44 1 4.1202 7.2899 1.6311 45 1 4.2465 7.4713 4.9595 46 1 5.1426 2.6680 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733710817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:05 Heat of formation + Delta-G solvation = -2.930967 kcal Electronic energy + Delta-G solvation = -30392.080308 eV Core-core repulsion = 26285.499478 eV Total energy + Delta-G solvation = -4106.580830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.55929 -40.14179 -38.31066 -37.56831 -37.20976 -34.58127 -32.92797 -32.15964 -31.48891 -30.53645 -29.92749 -27.80223 -26.48322 -24.80387 -24.01841 -23.28570 -22.81036 -21.75026 -20.71802 -20.00567 -18.89342 -17.98226 -17.36712 -16.76238 -16.30186 -16.19462 -15.75738 -15.58736 -15.21526 -14.70908 -14.59473 -14.57195 -14.28899 -14.12388 -13.75812 -13.72859 -13.34597 -13.17072 -12.95766 -12.91221 -12.71188 -12.45984 -12.29234 -11.85601 -11.69228 -11.56093 -11.22419 -11.06585 -10.84207 -10.75779 -10.71164 -10.45085 -9.98507 -9.60850 -9.54443 -9.39423 -8.87396 -8.73884 -8.35391 -7.67191 -6.65621 -5.63738 -2.83966 0.96642 1.15951 2.46990 2.86139 3.09331 3.24959 3.53125 3.57134 3.58873 3.76568 4.18245 4.36482 4.51185 4.60605 4.67652 4.71322 4.79812 4.85853 4.89722 4.98313 5.04818 5.15682 5.18830 5.23988 5.42024 5.53889 5.56692 5.65509 5.72412 5.74522 5.80796 5.84938 5.93670 5.98432 6.17906 6.20968 6.37477 6.43532 6.60174 6.68761 6.76319 7.06603 7.11241 7.49803 7.81378 8.09352 8.41385 8.54929 9.66425 10.23604 10.57932 11.59989 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.004357 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.011929 B = 6424.450713 C = 8444.944118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.290 6.290 3 C -0.036 4.036 4 C 0.023 3.977 5 N -0.564 5.564 6 H 0.423 0.577 7 C 0.149 3.851 8 C 0.508 3.492 9 O -0.402 6.402 10 N -0.607 5.607 11 C 0.089 3.911 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.128 4.128 15 C 0.144 3.856 16 H 0.075 0.925 17 C 0.155 3.845 18 N -0.697 5.697 19 C -0.214 4.214 20 H 0.066 0.934 21 C -0.018 4.018 22 N -0.938 5.938 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.293 1.293 26 H -0.287 1.287 27 C -0.234 4.234 28 C 0.404 3.596 29 O -0.505 6.505 30 H 0.052 0.948 31 H 0.101 0.899 32 H 0.053 0.947 33 H 0.166 0.834 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.379 0.621 45 H 0.251 0.749 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.149 -4.487 -17.086 22.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.201 6.201 3 C -0.087 4.087 4 C -0.104 4.104 5 N -0.180 5.180 6 H 0.262 0.738 7 C 0.037 3.963 8 C 0.289 3.711 9 O -0.266 6.266 10 N -0.346 5.346 11 C -0.035 4.035 12 C -0.170 4.170 13 C -0.156 4.156 14 C -0.167 4.167 15 C 0.041 3.959 16 H 0.093 0.907 17 C 0.028 3.972 18 N -0.340 5.340 19 C -0.346 4.346 20 H 0.084 0.916 21 C -0.213 4.213 22 N -0.588 5.588 23 Si 0.735 3.265 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.214 1.214 27 C -0.260 4.260 28 C 0.294 3.706 29 O -0.390 6.390 30 H 0.071 0.929 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.183 0.817 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.212 0.788 45 H 0.061 0.939 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.960 -5.122 -16.522 21.614 hybrid contribution -0.486 0.517 0.901 1.147 sum -13.446 -4.605 -15.620 21.119 Atomic orbital electron populations 1.23101 0.79465 1.04282 1.00828 1.86272 1.20096 1.24534 1.89218 1.20429 0.94857 0.84513 1.08912 1.21631 0.98588 0.84508 1.05662 1.41252 1.05445 1.08342 1.62939 0.73759 1.20807 0.82475 0.96723 0.96319 1.18121 0.87106 0.82764 0.83070 1.91377 1.24310 1.76055 1.34887 1.47882 1.30258 1.14145 1.42304 1.22047 0.88377 1.01756 0.91303 1.21876 1.01555 0.97977 0.95634 1.21512 0.97714 0.96315 1.00050 1.21935 0.97750 1.02551 0.94473 1.21589 0.96073 0.82913 0.95303 0.90684 1.20961 0.92157 0.98423 0.85682 1.42210 1.06395 1.86416 0.98966 1.19118 0.88464 1.40036 0.86943 0.91566 1.24615 0.95986 1.03842 0.96823 1.69629 1.15624 1.58714 1.14855 0.86307 0.81293 0.77755 0.81126 1.21543 1.21929 1.21412 1.22277 1.01871 0.90349 1.11542 1.16779 0.85992 0.89842 0.77988 1.90834 1.65775 1.37651 1.44698 0.92907 0.88093 0.92799 0.81667 0.89908 0.91096 0.91293 0.90961 0.91739 0.91750 0.90445 0.91345 0.96029 0.94250 0.78758 0.93889 0.82060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.13 16 2 O -0.29 -3.86 10.33 -35.61 -0.37 -4.23 16 3 C -0.04 -0.49 6.71 -39.17 -0.26 -0.75 16 4 C 0.02 0.22 10.22 -16.82 -0.17 0.05 16 5 N -0.56 -5.73 3.72 -9.58 -0.04 -5.77 16 6 H 0.42 3.18 6.84 -40.82 -0.28 2.90 16 7 C 0.15 2.14 5.82 -82.53 -0.48 1.66 16 8 C 0.51 8.44 7.03 -12.23 -0.09 8.35 16 9 O -0.40 -8.95 10.83 5.35 0.06 -8.89 16 10 N -0.61 -8.02 2.97 -166.24 -0.49 -8.51 16 11 C 0.09 0.76 5.30 -3.71 -0.02 0.74 16 12 C -0.13 -1.00 6.08 -26.61 -0.16 -1.17 16 13 C -0.12 -0.97 5.88 -26.67 -0.16 -1.13 16 14 C -0.13 -1.40 5.34 -26.59 -0.14 -1.54 16 15 C 0.14 2.08 2.90 -67.60 -0.20 1.89 16 16 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 17 C 0.16 3.08 4.90 -4.04 -0.02 3.06 16 18 N -0.70 -17.54 3.26 -59.91 -0.20 -17.74 16 19 C -0.21 -6.13 9.78 -15.06 -0.15 -6.28 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 22 N -0.94 -28.88 13.06 55.49 0.72 -28.16 16 23 Si 0.90 23.38 29.55 -169.99 -5.02 18.35 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C -0.23 -3.84 9.58 -39.03 -0.37 -4.22 16 28 C 0.40 7.04 6.78 -37.02 -0.25 6.79 16 29 O -0.50 -10.73 17.71 -11.15 -0.20 -10.93 16 30 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 31 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 33 H 0.17 0.86 6.21 -52.48 -0.33 0.53 16 34 H 0.08 0.62 4.54 -51.93 -0.24 0.38 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 43 H 0.04 0.86 6.20 -51.92 -0.32 0.53 16 44 H 0.38 10.08 7.38 -40.82 -0.30 9.77 16 45 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.16 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -38.59 366.42 -8.04 -46.63 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.45 Total: 5.78 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: -1.57 Total: 7.94 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: 0.00 Total: -60.18 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.51 Total: -24.05 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.59 -8.04 -46.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733710817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.696 kcal (2) G-P(sol) polarization free energy of solvation -38.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds