Wall clock time and date at job start Tue Mar 31 2020 19:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36015 * 117.00050 * 2 1 4 4 C 1.35847 * 120.31251 * 359.97438 * 3 2 1 5 5 N 1.35437 * 120.77723 * 179.74723 * 4 3 2 6 6 H 0.97005 * 119.30113 * 180.26974 * 5 4 3 7 7 C 1.36427 * 121.40742 * 0.55640 * 5 4 3 8 8 C 1.48074 * 119.71796 * 179.71354 * 7 5 4 9 9 O 1.21522 * 119.99685 * 134.73763 * 8 7 5 10 10 N 1.34775 * 120.00511 * 314.73610 * 8 7 5 11 11 C 1.46932 * 120.62688 * 4.08251 * 10 8 7 12 12 C 1.53184 * 108.77683 * 233.58506 * 11 10 8 13 13 C 1.53045 * 109.31030 * 305.36555 * 12 11 10 14 14 C 1.53077 * 109.65762 * 61.30186 * 13 12 11 15 15 C 1.46922 * 120.63555 * 184.05633 * 10 8 7 16 16 H 1.08999 * 109.58869 * 246.34990 * 15 10 8 17 17 C 1.53002 * 109.58542 * 6.62663 * 15 10 8 18 18 N 1.46499 * 109.47448 * 285.21341 * 17 15 10 19 19 C 1.36936 * 119.99985 * 185.30859 * 18 17 15 20 20 H 1.07996 * 119.99805 * 359.72855 * 19 18 17 21 21 C 1.38808 * 119.99651 * 179.72033 * 19 18 17 22 22 N 1.31614 * 120.00361 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99744 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47433 * 60.00282 * 23 21 19 25 25 H 1.48501 * 109.47248 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.46980 * 299.99953 * 23 21 19 27 27 C 1.36177 * 120.56385 * 359.44333 * 7 5 4 28 28 C 1.41570 * 120.31566 * 180.02562 * 3 2 1 29 29 O 1.22267 * 120.65684 * 359.97438 * 28 3 2 30 30 H 1.08994 * 109.47647 * 59.99902 * 1 2 3 31 31 H 1.09009 * 109.47338 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47197 * 299.99570 * 1 2 3 33 33 H 1.08005 * 119.61340 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.58555 * 353.37272 * 11 10 8 35 35 H 1.08999 * 109.58431 * 113.65449 * 11 10 8 36 36 H 1.09004 * 109.49953 * 65.31290 * 12 11 10 37 37 H 1.08993 * 109.50288 * 185.41259 * 12 11 10 38 38 H 1.08999 * 109.45884 * 181.38388 * 13 12 11 39 39 H 1.08992 * 109.46168 * 301.35242 * 13 12 11 40 40 H 1.09006 * 109.62115 * 178.83121 * 14 13 12 41 41 H 1.08996 * 109.39470 * 58.72105 * 14 13 12 42 42 H 1.09002 * 109.46896 * 165.20838 * 17 15 10 43 43 H 1.09008 * 109.46847 * 45.21757 * 17 15 10 44 44 H 0.96998 * 119.99506 * 5.03288 * 18 17 15 45 45 H 0.97002 * 120.00298 * 180.02562 * 22 21 19 46 46 H 1.08001 * 120.40665 * 180.29763 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3128 2.3552 -0.0005 5 7 1.9179 3.5669 0.0046 6 1 1.3732 4.3696 0.0081 7 6 3.2772 3.6828 -0.0009 8 6 3.8994 5.0265 -0.0014 9 8 4.8299 5.2655 0.7427 10 7 3.4337 5.9845 -0.8271 11 6 2.2537 5.7395 -1.6677 12 6 2.6115 6.0543 -3.1235 13 6 3.1617 7.4797 -3.2126 14 6 4.4326 7.5948 -2.3671 15 6 4.0958 7.2939 -0.9033 16 1 3.4285 8.0639 -0.5161 17 6 5.3825 7.2669 -0.0760 18 7 5.0479 7.3197 1.3493 19 6 6.0445 7.4169 2.2834 20 1 7.0773 7.4502 1.9696 21 6 5.7270 7.4727 3.6336 22 7 4.4683 7.4318 4.0160 23 14 7.0865 7.6060 4.9078 24 1 7.8669 8.8470 4.6712 25 1 6.4889 7.6481 6.2667 26 1 7.9843 6.4281 4.7988 27 6 4.0668 2.5733 -0.0003 28 6 3.4598 1.2938 -0.0005 29 8 4.1430 0.2798 -0.0006 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 0.2343 2.2973 -0.0005 34 1 1.9550 4.6947 -1.5825 35 1 1.4345 6.3814 -1.3435 36 1 3.3668 5.3503 -3.4730 37 1 1.7195 5.9693 -3.7440 38 1 3.3942 7.7149 -4.2512 39 1 2.4154 8.1810 -2.8397 40 1 4.8355 8.6045 -2.4475 41 1 5.1717 6.8781 -2.7251 42 1 6.0000 8.1266 -0.3364 43 1 5.9308 6.3487 -0.2868 44 1 4.1202 7.2899 1.6311 45 1 4.2465 7.4713 4.9595 46 1 5.1426 2.6680 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733710817.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:04 Heat of formation + Delta-G solvation = -31.421867 kcal Electronic energy + Delta-G solvation = -30393.315767 eV Core-core repulsion = 26285.499478 eV Total energy + Delta-G solvation = -4107.816288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.71431 -41.30342 -39.27258 -38.82127 -38.37486 -36.34716 -34.03278 -33.70875 -32.73249 -31.74239 -31.39453 -28.44721 -27.83686 -26.26394 -25.08634 -24.50111 -24.18682 -23.08388 -21.77659 -21.04773 -19.93544 -19.34180 -18.80783 -18.19696 -17.36532 -17.23703 -16.91052 -16.77190 -16.58916 -16.16136 -15.59062 -15.55845 -15.40272 -15.24800 -15.18185 -14.98972 -14.65883 -14.56862 -14.21540 -14.04001 -13.90693 -13.78420 -13.56198 -13.14092 -12.77794 -12.73628 -12.37915 -12.26011 -12.18877 -12.08749 -11.89121 -11.73653 -11.51920 -11.39431 -10.94043 -10.83560 -10.54169 -10.18292 -9.61378 -8.77882 -8.70444 -7.86808 -5.05030 -0.29652 0.12877 1.34320 1.43584 1.48106 1.52279 1.62749 2.01769 2.33032 2.55437 2.60601 3.13299 3.47693 3.52361 3.67612 3.75549 3.80500 3.90709 3.95368 4.07855 4.30074 4.33785 4.36341 4.42571 4.47289 4.48563 4.56976 4.61903 4.64662 4.82310 4.84627 4.94308 5.00328 5.04214 5.10365 5.13871 5.26449 5.30596 5.45009 5.50968 5.53804 5.67082 5.80501 6.26840 6.32056 6.35713 6.90857 7.12157 7.43419 8.21968 8.44976 9.37438 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009597 B = 0.004357 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2917.011929 B = 6424.450713 C = 8444.944118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.324 6.324 3 C -0.059 4.059 4 C 0.069 3.931 5 N -0.535 5.535 6 H 0.444 0.556 7 C 0.165 3.835 8 C 0.513 3.487 9 O -0.473 6.473 10 N -0.596 5.596 11 C 0.078 3.922 12 C -0.129 4.129 13 C -0.113 4.113 14 C -0.122 4.122 15 C 0.151 3.849 16 H 0.079 0.921 17 C 0.155 3.845 18 N -0.704 5.704 19 C -0.215 4.215 20 H 0.060 0.940 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.960 3.040 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.292 1.292 27 C -0.257 4.257 28 C 0.382 3.618 29 O -0.573 6.573 30 H 0.083 0.917 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.230 0.770 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.056 0.944 37 H 0.107 0.893 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.020 0.980 43 H 0.018 0.982 44 H 0.370 0.630 45 H 0.245 0.755 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 -3.255 -19.311 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.237 6.237 3 C -0.109 4.109 4 C -0.059 4.059 5 N -0.150 5.150 6 H 0.287 0.713 7 C 0.050 3.950 8 C 0.296 3.704 9 O -0.342 6.342 10 N -0.333 5.333 11 C -0.043 4.043 12 C -0.167 4.167 13 C -0.151 4.151 14 C -0.161 4.161 15 C 0.048 3.952 16 H 0.096 0.904 17 C 0.029 3.971 18 N -0.345 5.345 19 C -0.348 4.348 20 H 0.078 0.922 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.221 1.221 26 H -0.219 1.219 27 C -0.283 4.283 28 C 0.278 3.722 29 O -0.464 6.464 30 H 0.101 0.899 31 H 0.130 0.870 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.075 0.925 37 H 0.126 0.874 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.202 0.798 45 H 0.054 0.946 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.208 -3.823 -18.839 25.800 hybrid contribution 0.679 0.145 1.416 1.577 sum -16.529 -3.678 -17.424 24.296 Atomic orbital electron populations 1.23525 0.76199 1.06086 1.03088 1.86232 1.23468 1.24414 1.89565 1.20038 0.93311 0.86427 1.11159 1.22347 1.00679 0.82258 1.00593 1.41377 1.03892 1.09982 1.59795 0.71286 1.20322 0.84161 0.94774 0.95742 1.18460 0.85923 0.83590 0.82402 1.91364 1.27374 1.77577 1.37915 1.48019 1.31034 1.12797 1.41426 1.22515 0.86960 1.03417 0.91398 1.21894 1.02748 0.97124 0.94920 1.21514 0.96119 0.97108 1.00333 1.21909 0.99510 1.02637 0.92053 1.21460 0.93536 0.83481 0.96735 0.90356 1.21006 0.95144 0.96964 0.84002 1.42228 1.05083 1.86625 1.00552 1.19425 0.89075 1.38217 0.88050 0.92168 1.25272 0.97961 1.05197 0.98516 1.69759 1.17042 1.60958 1.14481 0.85392 0.78963 0.77775 0.78786 1.20235 1.22063 1.21929 1.22066 1.01209 0.91392 1.13678 1.17225 0.88223 0.89073 0.77659 1.90784 1.67392 1.39112 1.49160 0.89870 0.86988 0.90883 0.75378 0.88601 0.87839 0.92528 0.87426 0.89949 0.90459 0.89743 0.92319 0.96181 0.96410 0.79835 0.94596 0.84827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 9.81 113.37 1.11 1.16 16 2 O -0.32 -8.19 10.33 -78.59 -0.81 -9.00 16 3 C -0.06 -1.55 6.71 22.54 0.15 -1.39 16 4 C 0.07 1.00 10.22 83.58 0.85 1.86 16 5 N -0.54 -8.84 3.72 -184.21 -0.69 -9.52 16 6 H 0.44 4.18 6.84 -92.70 -0.63 3.55 16 7 C 0.17 4.65 5.82 40.56 0.24 4.89 16 8 C 0.51 17.19 7.03 86.85 0.61 17.80 16 9 O -0.47 -22.21 10.83 -3.78 -0.04 -22.25 16 10 N -0.60 -14.70 2.97 -798.17 -2.37 -17.07 16 11 C 0.08 0.98 5.30 86.36 0.46 1.43 16 12 C -0.13 -1.32 6.08 30.67 0.19 -1.14 16 13 C -0.11 -1.35 5.88 30.64 0.18 -1.17 16 14 C -0.12 -2.41 5.34 30.68 0.16 -2.24 16 15 C 0.15 4.20 2.90 44.97 0.13 4.33 16 16 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 17 C 0.16 6.35 4.90 86.38 0.42 6.77 16 18 N -0.70 -36.62 3.26 -343.45 -1.12 -37.74 16 19 C -0.21 -12.75 9.78 84.03 0.82 -11.93 16 20 H 0.06 3.54 7.83 -2.91 -0.02 3.52 16 21 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 22 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 23 Si 0.96 49.45 29.55 68.60 2.03 51.48 16 24 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.29 -15.08 7.11 99.48 0.71 -14.38 16 26 H -0.29 -15.09 7.11 99.48 0.71 -14.38 16 27 C -0.26 -9.03 9.58 22.63 0.22 -8.81 16 28 C 0.38 14.09 6.78 23.93 0.16 14.25 16 29 O -0.57 -26.68 17.71 8.94 0.16 -26.52 16 30 H 0.08 0.36 7.66 -2.39 -0.02 0.34 16 31 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.07 0.48 7.66 -2.38 -0.02 0.46 16 33 H 0.23 0.55 6.21 -2.91 -0.02 0.54 16 34 H 0.10 0.92 4.54 -2.38 -0.01 0.91 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 0.76 8.14 -2.38 -0.02 0.75 16 37 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 43 H 0.02 0.83 6.20 -2.38 -0.01 0.82 16 44 H 0.37 20.17 7.38 -92.71 -0.68 19.49 16 45 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 46 H 0.13 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -95.40 366.42 3.32 -92.08 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -0.29 Total: 17.91 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 6.17 Total: 21.54 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -3.90 Total: -125.24 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -0.69 Total: -57.77 kcal Atomic # 14 Polarization: 49.45 SS G_CDS: 2.03 Total: 51.48 kcal Total: -95.40 3.32 -92.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733710817.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.662 kcal (2) G-P(sol) polarization free energy of solvation -95.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds