Wall clock time and date at job start Tue Mar 31 2020 18:32:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.36929 * 120.00111 * 2 1
4 4 H 1.08011 * 119.99730 * 203.47734 * 3 2 1
5 5 C 1.38808 * 120.00402 * 23.47196 * 3 2 1
6 6 N 1.31619 * 120.00156 * 11.46581 * 5 3 2
7 7 Si 1.86805 * 120.00185 * 191.45531 * 5 3 2
8 8 H 1.48499 * 109.46900 * 90.00420 * 7 5 3
9 9 H 1.48500 * 109.47144 * 210.00441 * 7 5 3
10 10 H 1.48499 * 109.46868 * 330.00711 * 7 5 3
11 11 C 1.46498 * 119.99498 * 179.97438 * 2 1 3
12 12 C 1.52996 * 109.47613 * 89.99904 * 11 2 1
13 13 C 1.52993 * 109.47579 * 180.02562 * 12 11 2
14 14 N 1.46497 * 109.47262 * 180.02562 * 13 12 11
15 15 C 1.46501 * 120.00073 * 89.99723 * 14 13 12
16 16 C 1.34779 * 119.99761 * 269.71908 * 14 13 12
17 17 O 1.21546 * 120.00312 * 5.27901 * 16 14 13
18 18 C 1.47888 * 119.99551 * 185.27421 * 16 14 13
19 19 C 1.39285 * 119.60515 * 186.93266 * 18 16 14
20 20 C 1.38533 * 119.12739 * 180.02562 * 19 18 16
21 21 C 1.38922 * 118.52954 * 0.02562 * 20 19 18
22 22 C 1.39716 * 119.42795 * 359.86614 * 21 20 19
23 23 N 1.31985 * 120.37558 * 359.92604 * 22 21 20
24 24 O 1.35995 * 120.44480 * 180.24978 * 22 21 20
25 25 C 1.43145 * 116.69485 * 342.38992 * 24 22 21
26 26 C 1.53468 * 108.31492 * 46.61073 * 25 24 22
27 27 O 1.35783 * 119.57654 * 179.64235 * 21 20 19
28 28 H 1.08997 * 109.46998 * 275.05222 * 1 2 3
29 29 H 1.09000 * 109.46970 * 35.04581 * 1 2 3
30 30 H 1.08990 * 109.47590 * 155.04567 * 1 2 3
31 31 H 0.96993 * 120.00322 * 179.97438 * 6 5 3
32 32 H 1.09004 * 109.47141 * 329.99808 * 11 2 1
33 33 H 1.09000 * 109.47042 * 210.00347 * 11 2 1
34 34 H 1.08996 * 109.47117 * 59.99460 * 12 11 2
35 35 H 1.09006 * 109.46652 * 300.00008 * 12 11 2
36 36 H 1.08996 * 109.47403 * 59.99555 * 13 12 11
37 37 H 1.09006 * 109.47069 * 299.99672 * 13 12 11
38 38 H 1.09002 * 109.47396 * 95.62973 * 15 14 13
39 39 H 1.09000 * 109.47050 * 215.62749 * 15 14 13
40 40 H 1.08996 * 109.47219 * 335.62999 * 15 14 13
41 41 H 1.08002 * 120.43876 * 0.02562 * 19 18 16
42 42 H 1.07998 * 120.73487 * 180.02562 * 20 19 18
43 43 H 1.09005 * 109.69674 * 166.31115 * 25 24 22
44 44 H 1.08996 * 109.69913 * 286.86491 * 25 24 22
45 45 H 1.09007 * 109.70693 * 59.81105 * 26 25 24
46 46 H 1.09000 * 109.71095 * 180.38922 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1858 0.0000
4 1 3.1628 1.2245 -0.3727
5 6 1.5419 2.3383 0.4788
6 7 0.4045 2.2580 1.1361
7 14 2.3384 4.0032 0.1905
8 1 1.8452 4.5729 -1.0891
9 1 1.9901 4.9185 1.3067
10 1 3.8131 3.8416 0.1246
11 6 2.1974 -1.2688 0.0006
12 6 2.4524 -1.7112 -1.4416
13 6 3.2167 -3.0366 -1.4410
14 7 3.4614 -3.4598 -2.8220
15 6 4.6827 -3.0376 -3.5121
16 6 2.5654 -4.2423 -3.4557
17 8 1.5111 -4.5179 -2.9175
18 6 2.8653 -4.7655 -4.8061
19 6 1.8800 -5.4507 -5.5130
20 6 2.1718 -5.9370 -6.7769
21 6 3.4433 -5.7217 -7.2935
22 6 4.3845 -5.0241 -6.5322
23 7 4.0697 -4.5716 -5.3330
24 8 5.6336 -4.7973 -7.0197
25 6 6.0510 -5.6094 -8.1221
26 6 4.9161 -5.6410 -9.1547
27 8 3.7545 -6.1955 -8.5274
28 1 -0.3633 0.0905 1.0237
29 1 -0.3633 0.8413 -0.5901
30 1 -0.3634 -0.9316 -0.4335
31 1 -0.0201 3.0632 1.4710
32 1 1.6083 -2.0282 0.5148
33 1 3.1498 -1.1383 0.5144
34 1 3.0415 -0.9519 -1.9559
35 1 1.4999 -1.8417 -1.9554
36 1 2.6273 -3.7957 -0.9269
37 1 4.1692 -2.9065 -0.9272
38 1 5.4382 -3.8185 -3.4243
39 1 4.4628 -2.8617 -4.5651
40 1 5.0561 -2.1186 -3.0605
41 1 0.9014 -5.6010 -5.0814
42 1 1.4272 -6.4716 -7.3481
43 1 6.9468 -5.1833 -8.5738
44 1 6.2604 -6.6210 -7.7746
45 1 4.7013 -4.6282 -9.4959
46 1 5.2078 -6.2604 -10.0028
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733773865.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:32:39
Heat of formation + Delta-G solvation = -41.978197 kcal
Electronic energy + Delta-G solvation = -28692.399419 eV
Core-core repulsion = 24584.125374 eV
Total energy + Delta-G solvation = -4108.274045 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.69414 -41.21397 -39.34227 -38.51179 -37.92302 -36.79575 -34.23907 -33.38132
-32.58655 -31.80967 -29.96960 -28.14130 -27.82342 -27.25819 -26.10312 -25.18775
-24.00921 -22.66372 -21.95304 -21.07238 -19.64725 -19.09309 -18.82345 -18.71635
-17.84004 -17.28281 -17.01630 -16.77352 -16.36875 -16.14785 -15.87021 -15.58904
-15.53523 -15.32584 -15.14956 -14.81063 -14.66121 -14.51568 -14.23866 -13.95890
-13.84637 -13.39591 -13.29759 -12.95490 -12.76855 -12.65910 -12.54336 -12.48623
-12.29109 -12.26241 -12.12391 -12.06342 -11.85125 -11.46736 -11.38176 -10.69447
-10.65326 -10.27285 -9.78672 -9.40981 -8.74906 -7.80773 -5.31664 -0.56307
-0.00859 1.45637 1.46495 1.48254 1.57112 1.57923 1.87310 2.01584
2.51923 2.60839 2.88782 3.18588 3.32086 3.47036 3.70014 3.74074
3.88692 3.97488 4.00982 4.08372 4.16931 4.33772 4.40802 4.52757
4.55155 4.56175 4.59273 4.61054 4.76550 4.82077 4.83148 4.87288
4.93684 5.07086 5.13972 5.24232 5.27038 5.49196 5.50539 5.58339
5.63248 5.67912 5.98979 6.26388 6.34371 6.57019 7.01472 7.15726
7.87700 8.33831 9.22774
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.018964 B = 0.002249 C = 0.002137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1476.162948 B =12445.012489 C =13097.488682
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.179 3.821
2 N -0.623 5.623
3 C -0.259 4.259
4 H 0.073 0.927
5 C -0.060 4.060
6 N -0.943 5.943
7 Si 0.973 3.027
8 H -0.288 1.288
9 H -0.294 1.294
10 H -0.264 1.264
11 C 0.153 3.847
12 C -0.130 4.130
13 C 0.124 3.876
14 N -0.595 5.595
15 C 0.096 3.904
16 C 0.563 3.437
17 O -0.565 6.565
18 C 0.065 3.935
19 C -0.103 4.103
20 C -0.076 4.076
21 C 0.038 3.962
22 C 0.246 3.754
23 N -0.449 5.449
24 O -0.310 6.310
25 C 0.018 3.982
26 C 0.011 3.989
27 O -0.304 6.304
28 H 0.007 0.993
29 H 0.013 0.987
30 H 0.021 0.979
31 H 0.248 0.752
32 H 0.045 0.955
33 H 0.056 0.944
34 H 0.050 0.950
35 H 0.032 0.968
36 H 0.076 0.924
37 H 0.104 0.896
38 H 0.068 0.932
39 H 0.083 0.917
40 H 0.071 0.929
41 H 0.163 0.837
42 H 0.185 0.815
43 H 0.164 0.836
44 H 0.089 0.911
45 H 0.086 0.914
46 H 0.166 0.834
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.200 -21.551 -24.512 35.207
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 N -0.347 5.347
3 C -0.390 4.390
4 H 0.091 0.909
5 C -0.254 4.254
6 N -0.590 5.590
7 Si 0.801 3.199
8 H -0.215 1.215
9 H -0.221 1.221
10 H -0.189 1.189
11 C 0.027 3.973
12 C -0.171 4.171
13 C 0.001 3.999
14 N -0.325 5.325
15 C -0.046 4.046
16 C 0.350 3.650
17 O -0.444 6.444
18 C -0.072 4.072
19 C -0.124 4.124
20 C -0.101 4.101
21 C -0.011 4.011
22 C 0.063 3.937
23 N -0.173 5.173
24 O -0.220 6.220
25 C -0.057 4.057
26 C -0.063 4.063
27 O -0.217 6.217
28 H 0.026 0.974
29 H 0.032 0.968
30 H 0.040 0.960
31 H 0.057 0.943
32 H 0.063 0.937
33 H 0.074 0.926
34 H 0.069 0.931
35 H 0.051 0.949
36 H 0.094 0.906
37 H 0.122 0.878
38 H 0.086 0.914
39 H 0.101 0.899
40 H 0.090 0.910
41 H 0.181 0.819
42 H 0.202 0.798
43 H 0.181 0.819
44 H 0.107 0.893
45 H 0.105 0.895
46 H 0.183 0.817
Dipole moment (debyes) X Y Z Total
from point charges 13.285 -21.125 -23.750 34.450
hybrid contribution -0.483 0.805 -0.409 1.025
sum 12.802 -20.319 -24.159 34.065
Atomic orbital electron populations
1.20497 0.83243 0.95360 0.97561 1.44174 1.02025 1.02058 1.86418
1.19545 0.98688 0.86807 1.33916 0.90908 1.25902 0.98671 1.02220
0.98635 1.70244 1.20364 1.27666 1.40742 0.85175 0.78584 0.79481
0.76672 1.21524 1.22051 1.18871 1.20802 0.95963 0.86613 0.93926
1.22286 0.99017 0.96278 0.99495 1.21534 1.01549 0.95596 0.81221
1.47909 1.21835 1.48125 1.14613 1.22127 0.84757 0.99885 0.97864
1.18106 0.83322 0.78843 0.84708 1.90780 1.25116 1.61209 1.67322
1.20609 0.90107 1.01307 0.95147 1.22035 1.00981 0.95500 0.93871
1.21201 0.94026 0.99826 0.95082 1.20059 0.94546 0.99245 0.87250
1.19636 0.86354 0.97466 0.90287 1.67169 1.19998 1.19971 1.10126
1.86234 1.26633 1.59103 1.50030 1.24190 0.99505 0.97084 0.84908
1.24148 0.82997 1.02704 0.96442 1.86269 1.47374 1.61492 1.26580
0.97444 0.96814 0.96032 0.94316 0.93690 0.92610 0.93127 0.94891
0.90564 0.87777 0.91381 0.89897 0.91038 0.81927 0.79796 0.81884
0.89309 0.89541 0.81665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 9.70 8.97 127.77 1.15 10.85 16
2 N -0.62 -33.56 2.92 -726.95 -2.12 -35.68 16
3 C -0.26 -14.84 9.66 84.03 0.81 -14.03 16
4 H 0.07 3.99 7.86 -2.91 -0.02 3.96 16
5 C -0.06 -3.49 5.13 84.86 0.44 -3.06 16
6 N -0.94 -58.37 10.65 21.65 0.23 -58.14 16
7 Si 0.97 46.48 29.57 68.60 2.03 48.51 16
8 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16
9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16
10 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16
11 C 0.15 6.58 5.64 86.38 0.49 7.07 16
12 C -0.13 -4.92 5.86 30.59 0.18 -4.75 16
13 C 0.12 3.76 5.35 86.38 0.46 4.22 16
14 N -0.59 -17.67 2.87 -850.16 -2.44 -20.12 16
15 C 0.10 2.34 9.10 127.77 1.16 3.51 16
16 C 0.56 18.04 7.63 86.80 0.66 18.70 16
17 O -0.56 -21.32 15.96 -3.86 -0.06 -21.38 16
18 C 0.06 1.72 6.56 41.79 0.27 1.99 16
19 C -0.10 -2.19 9.62 22.59 0.22 -1.97 16
20 C -0.08 -1.23 10.08 22.50 0.23 -1.01 16
21 C 0.04 0.67 6.51 22.79 0.15 0.81 16
22 C 0.25 5.12 7.55 85.03 0.64 5.76 16
23 N -0.45 -11.17 6.16 -297.44 -1.83 -13.01 16
24 O -0.31 -5.32 10.51 -81.43 -0.86 -6.18 16
25 C 0.02 0.11 7.24 72.14 0.52 0.63 16
26 C 0.01 0.06 7.26 72.14 0.52 0.58 16
27 O -0.30 -3.89 10.42 -79.06 -0.82 -4.71 16
28 H 0.01 0.43 7.34 -2.39 -0.02 0.41 16
29 H 0.01 0.77 7.33 -2.39 -0.02 0.75 16
30 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16
31 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16
32 H 0.04 1.85 8.07 -2.39 -0.02 1.83 16
33 H 0.06 2.28 8.04 -2.39 -0.02 2.26 16
34 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
35 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16
36 H 0.08 2.42 7.49 -2.39 -0.02 2.40 16
37 H 0.10 2.61 8.07 -2.38 -0.02 2.59 16
38 H 0.07 1.53 7.98 -2.39 -0.02 1.51 16
39 H 0.08 2.15 5.79 -2.39 -0.01 2.14 16
40 H 0.07 1.62 8.03 -2.39 -0.02 1.60 16
41 H 0.16 3.29 7.64 -2.91 -0.02 3.27 16
42 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16
43 H 0.16 -0.11 8.14 -2.38 -0.02 -0.13 16
44 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16
45 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16
46 H 0.17 -0.42 8.14 -2.39 -0.02 -0.44 16
Total: -1.00 -78.63 379.45 3.01 -75.63
By element:
Atomic # 1 Polarization: 4.79 SS G_CDS: 0.98 Total: 5.77 kcal
Atomic # 6 Polarization: 21.41 SS G_CDS: 7.90 Total: 29.31 kcal
Atomic # 7 Polarization: -120.78 SS G_CDS: -6.17 Total: -126.95 kcal
Atomic # 8 Polarization: -30.53 SS G_CDS: -1.74 Total: -32.28 kcal
Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal
Total: -78.63 3.01 -75.63 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733773865.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 33.647 kcal
(2) G-P(sol) polarization free energy of solvation -78.631 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.984 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.625 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.978 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds