Wall clock time and date at job start Tue Mar 31 2020 19:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35643 * 117.00382 * 2 1 4 4 C 1.39346 * 120.54059 * 0.22934 * 3 2 1 5 5 C 1.38302 * 118.44147 * 180.28639 * 4 3 2 6 6 C 1.38766 * 119.44353 * 359.72597 * 5 4 3 7 7 N 1.31378 * 121.06734 * 0.02562 * 6 5 4 8 8 C 1.32855 * 121.69424 * 359.97438 * 7 6 5 9 9 C 1.47833 * 119.78153 * 179.97438 * 8 7 6 10 10 O 1.21563 * 120.00037 * 220.19392 * 9 8 7 11 11 N 1.34773 * 120.00251 * 40.19211 * 9 8 7 12 12 C 1.46926 * 120.63035 * 356.25237 * 11 9 8 13 13 C 1.53190 * 108.77549 * 126.37349 * 12 11 9 14 14 C 1.53033 * 109.33888 * 54.61847 * 13 12 11 15 15 C 1.53035 * 109.54320 * 298.68253 * 14 13 12 16 16 C 1.52996 * 109.50093 * 181.28644 * 15 14 13 17 17 O 1.42893 * 109.47251 * 180.13312 * 16 15 14 18 18 N 1.46497 * 109.46782 * 301.36809 * 15 14 13 19 19 C 1.36944 * 119.99720 * 179.85061 * 18 15 14 20 20 H 1.08001 * 120.00077 * 0.02562 * 19 18 15 21 21 C 1.38817 * 120.00033 * 180.02562 * 19 18 15 22 22 N 1.31618 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99847 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46702 * 90.00414 * 23 21 19 25 25 H 1.48498 * 109.47242 * 210.00184 * 23 21 19 26 26 H 1.48498 * 109.47432 * 330.00430 * 23 21 19 27 27 C 1.46930 * 120.63380 * 176.23297 * 11 9 8 28 28 H 1.09007 * 109.46999 * 59.99530 * 1 2 3 29 29 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46964 * 300.00092 * 1 2 3 31 31 H 1.08002 * 120.78153 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.27901 * 179.75397 * 5 4 3 33 33 H 1.08005 * 119.46691 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.58353 * 6.57914 * 12 11 9 35 35 H 1.09007 * 109.70386 * 246.22922 * 12 11 9 36 36 H 1.09003 * 109.49544 * 174.58845 * 13 12 11 37 37 H 1.09000 * 109.49279 * 294.64848 * 13 12 11 38 38 H 1.09004 * 109.46333 * 58.67661 * 14 13 12 39 39 H 1.09004 * 109.45819 * 178.63026 * 14 13 12 40 40 H 1.09003 * 109.46579 * 300.13296 * 16 15 14 41 41 H 1.09001 * 109.47274 * 60.12656 * 16 15 14 42 42 H 0.96699 * 114.00410 * 179.97438 * 17 16 15 43 43 H 0.96993 * 120.00390 * 359.85286 * 18 15 14 44 44 H 0.96998 * 119.99906 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.58434 * 353.42008 * 27 11 9 46 46 H 1.09006 * 109.58833 * 113.69444 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2971 2.3844 0.0048 5 6 1.9697 3.5928 -0.0015 6 6 3.3574 3.6010 -0.0065 7 7 4.0420 2.4798 -0.0059 8 6 3.4410 1.2949 0.0000 9 6 4.2531 0.0597 -0.0001 10 8 3.9121 -0.8919 -0.6754 11 7 5.3716 -0.0116 0.7484 12 6 5.8414 1.1566 1.5055 13 6 6.0295 0.7515 2.9708 14 6 6.9595 -0.4615 3.0459 15 6 6.3288 -1.6372 2.2962 16 6 7.2444 -2.8587 2.3991 17 8 6.6564 -3.9552 1.6963 18 7 5.0257 -1.9508 2.8876 19 6 4.2699 -2.9721 2.3766 20 1 4.6347 -3.5465 1.5379 21 6 3.0349 -3.2690 2.9366 22 7 2.3087 -4.2509 2.4458 23 14 2.4044 -2.2759 4.3877 24 1 1.6219 -1.1157 3.8908 25 1 1.5357 -3.1329 5.2340 26 1 3.5542 -1.7896 5.1918 27 6 6.1442 -1.2592 0.8233 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2176 2.3528 0.0090 32 1 1.4197 4.5222 -0.0020 33 1 3.8830 4.5445 -0.0110 34 1 5.1034 1.9560 1.4390 35 1 6.7914 1.5016 1.0969 36 1 6.4688 1.5816 3.5242 37 1 5.0627 0.4963 3.4046 38 1 7.9180 -0.2131 2.5902 39 1 7.1141 -0.7365 4.0893 40 1 8.2141 -2.6238 1.9602 41 1 7.3755 -3.1273 3.4473 42 1 7.1839 -4.7653 1.7191 43 1 4.6983 -1.4352 3.6411 44 1 1.4456 -4.4581 2.8369 45 1 5.6058 -2.0539 0.3067 46 1 7.1183 -1.1144 0.3560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733822958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:47 Heat of formation + Delta-G solvation = -35.308786 kcal Electronic energy + Delta-G solvation = -31608.850412 eV Core-core repulsion = 27500.865575 eV Total energy + Delta-G solvation = -4107.984838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88718 -39.39613 -38.06982 -37.46707 -35.60984 -33.80640 -32.50855 -31.94339 -31.02843 -30.71790 -29.11391 -27.38646 -25.88645 -25.22450 -23.62620 -23.12516 -22.82509 -21.56508 -20.02223 -18.39034 -17.88395 -17.69217 -17.19245 -16.78925 -16.24266 -15.94542 -15.43131 -15.32725 -14.76469 -14.49129 -14.34167 -14.14793 -13.94146 -13.72620 -13.41403 -13.24317 -13.12148 -12.90488 -12.55701 -12.38977 -12.28462 -11.98803 -11.67371 -11.43082 -11.37289 -11.16756 -10.83519 -10.82841 -10.59367 -10.51612 -10.07696 -9.89227 -9.83104 -9.71970 -9.37839 -9.07740 -8.86039 -8.75300 -8.36973 -7.90722 -7.00965 -5.44572 -2.78564 0.81872 1.21618 3.19479 3.27417 3.45732 3.47780 3.48409 3.53834 3.88873 4.40840 4.57975 4.68731 4.77365 4.86592 4.90935 5.10143 5.17235 5.20075 5.24521 5.26621 5.34775 5.39203 5.53353 5.62896 5.69299 5.87579 5.89397 5.89695 5.90823 5.93500 6.02053 6.06671 6.15583 6.19479 6.26874 6.32729 6.39664 6.65076 6.67291 6.98404 7.23077 7.31960 7.77357 8.06644 8.37274 8.47491 8.76133 8.86965 9.54067 10.21187 10.36471 11.74435 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.006183 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.167350 B = 4527.649658 C = 5767.303817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.269 6.269 3 C 0.137 3.863 4 C -0.178 4.178 5 C -0.116 4.116 6 C 0.044 3.956 7 N -0.417 5.417 8 C 0.058 3.942 9 C 0.580 3.420 10 O -0.503 6.503 11 N -0.582 5.582 12 C 0.105 3.895 13 C -0.135 4.135 14 C -0.118 4.118 15 C 0.194 3.806 16 C 0.078 3.922 17 O -0.534 6.534 18 N -0.730 5.730 19 C -0.202 4.202 20 H 0.117 0.883 21 C 0.000 4.000 22 N -0.936 5.936 23 Si 0.865 3.135 24 H -0.292 1.292 25 H -0.296 1.296 26 H -0.283 1.283 27 C 0.113 3.887 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.054 0.946 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.162 0.838 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.038 0.962 42 H 0.355 0.645 43 H 0.357 0.643 44 H 0.251 0.749 45 H 0.109 0.891 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 17.116 -2.395 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.178 6.178 3 C 0.086 3.914 4 C -0.204 4.204 5 C -0.136 4.136 6 C -0.115 4.115 7 N -0.130 5.130 8 C -0.082 4.082 9 C 0.365 3.635 10 O -0.376 6.376 11 N -0.314 5.314 12 C -0.019 4.019 13 C -0.173 4.173 14 C -0.157 4.157 15 C 0.101 3.899 16 C -0.003 4.003 17 O -0.336 6.336 18 N -0.372 5.372 19 C -0.331 4.331 20 H 0.134 0.866 21 C -0.193 4.193 22 N -0.586 5.586 23 Si 0.698 3.302 24 H -0.219 1.219 25 H -0.223 1.223 26 H -0.210 1.210 27 C -0.011 4.011 28 H 0.073 0.927 29 H 0.128 0.872 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.179 0.821 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.044 0.956 41 H 0.056 0.944 42 H 0.199 0.801 43 H 0.190 0.810 44 H 0.062 0.938 45 H 0.127 0.873 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.465 16.605 -3.014 17.457 hybrid contribution -1.432 0.605 1.547 2.193 sum 3.033 17.210 -1.466 17.536 Atomic orbital electron populations 1.23206 0.78242 1.05152 1.00552 1.86461 1.21234 1.24193 1.85880 1.20085 0.92459 0.86002 0.92865 1.21733 1.01028 0.91876 1.05788 1.22087 0.95756 0.98120 0.97615 1.22680 0.91416 0.96427 1.01003 1.67794 1.39179 0.97244 1.08733 1.20788 0.88968 0.93103 1.05319 1.17384 0.80090 0.85295 0.80746 1.90846 1.68727 1.36458 1.41562 1.47551 1.24887 1.12565 1.46359 1.21975 1.00714 0.88780 0.90391 1.21921 1.00685 0.97612 0.97086 1.21672 0.98348 0.94983 1.00650 1.19917 0.87025 0.90726 0.92192 1.22639 0.93965 0.88816 0.94923 1.86946 1.49121 1.21443 1.76129 1.42817 1.17285 1.39713 1.37368 1.19412 0.96523 1.05106 1.12104 0.86586 1.24573 0.97390 0.98567 0.98809 1.69685 1.13088 1.32253 1.43597 0.86825 0.78603 0.80172 0.84637 1.21947 1.22264 1.20965 1.22106 0.94184 0.86433 0.98351 0.92692 0.87240 0.92755 0.83856 0.84359 0.82092 0.88163 0.91884 0.91398 0.91472 0.91443 0.91714 0.95607 0.94362 0.80063 0.80987 0.93842 0.87295 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.83 101.05 0.99 1.33 16 2 O -0.27 -5.43 9.26 -34.68 -0.32 -5.75 16 3 C 0.14 2.43 6.67 -38.55 -0.26 2.17 16 4 C -0.18 -2.27 9.13 -39.15 -0.36 -2.62 16 5 C -0.12 -1.19 10.10 -39.36 -0.40 -1.59 16 6 C 0.04 0.50 11.17 -17.55 -0.20 0.30 16 7 N -0.42 -6.33 7.28 -9.71 -0.07 -6.40 16 8 C 0.06 1.08 6.01 -82.88 -0.50 0.58 16 9 C 0.58 12.86 7.28 -12.34 -0.09 12.77 16 10 O -0.50 -13.25 15.54 -10.74 -0.17 -13.41 16 11 N -0.58 -11.43 2.89 -173.88 -0.50 -11.93 16 12 C 0.10 1.63 6.02 -3.71 -0.02 1.60 16 13 C -0.13 -2.01 5.91 -26.62 -0.16 -2.17 16 14 C -0.12 -1.79 4.76 -26.70 -0.13 -1.92 16 15 C 0.19 3.75 0.68 -131.71 -0.09 3.66 16 16 C 0.08 1.38 6.08 37.16 0.23 1.60 16 17 O -0.53 -10.84 10.11 -35.23 -0.36 -11.20 16 18 N -0.73 -17.58 4.55 -47.12 -0.21 -17.79 16 19 C -0.20 -5.86 8.70 -15.05 -0.13 -5.99 16 20 H 0.12 3.73 5.51 -52.49 -0.29 3.44 16 21 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 22 N -0.94 -30.93 13.97 55.49 0.78 -30.15 16 23 Si 0.87 23.22 27.74 -169.99 -4.71 18.51 16 24 H -0.29 -7.87 7.11 56.52 0.40 -7.47 16 25 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 26 H -0.28 -7.13 6.52 56.52 0.37 -6.76 16 27 C 0.11 2.29 4.84 -3.71 -0.02 2.27 16 28 H 0.05 0.61 7.71 -51.92 -0.40 0.21 16 29 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.05 0.68 7.69 -51.93 -0.40 0.28 16 31 H 0.14 1.41 6.46 -52.49 -0.34 1.08 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.46 16 33 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.10 1.54 4.57 -51.93 -0.24 1.31 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.19 6.75 -51.93 -0.35 0.84 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.35 5.43 9.12 45.56 0.42 5.84 16 43 H 0.36 8.65 4.29 -40.82 -0.18 8.47 16 44 H 0.25 7.97 8.31 -40.82 -0.34 7.63 16 45 H 0.11 2.72 5.72 -51.93 -0.30 2.43 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -39.55 362.15 -6.80 -46.35 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -5.47 Total: 14.40 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.22 Total: 11.92 kcal Atomic # 7 Polarization: -66.27 SS G_CDS: -0.01 Total: -66.28 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.84 Total: -30.36 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -4.71 Total: 18.51 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.55 -6.80 -46.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733822958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.045 kcal (2) G-P(sol) polarization free energy of solvation -39.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds