Wall clock time and date at job start Tue Mar 31 2020 19:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35643 * 117.00382 * 2 1 4 4 C 1.39346 * 120.54059 * 0.22934 * 3 2 1 5 5 C 1.38302 * 118.44147 * 180.28639 * 4 3 2 6 6 C 1.38766 * 119.44353 * 359.72597 * 5 4 3 7 7 N 1.31378 * 121.06734 * 0.02562 * 6 5 4 8 8 C 1.32855 * 121.69424 * 359.97438 * 7 6 5 9 9 C 1.47833 * 119.78153 * 179.97438 * 8 7 6 10 10 O 1.21563 * 120.00037 * 220.19392 * 9 8 7 11 11 N 1.34773 * 120.00251 * 40.19211 * 9 8 7 12 12 C 1.46926 * 120.63035 * 356.25237 * 11 9 8 13 13 C 1.53190 * 108.77549 * 126.37349 * 12 11 9 14 14 C 1.53033 * 109.33888 * 54.61847 * 13 12 11 15 15 C 1.53035 * 109.54320 * 298.68253 * 14 13 12 16 16 C 1.52996 * 109.50093 * 181.28644 * 15 14 13 17 17 O 1.42893 * 109.47251 * 180.13312 * 16 15 14 18 18 N 1.46497 * 109.46782 * 301.36809 * 15 14 13 19 19 C 1.36944 * 119.99720 * 179.85061 * 18 15 14 20 20 H 1.08001 * 120.00077 * 0.02562 * 19 18 15 21 21 C 1.38817 * 120.00033 * 180.02562 * 19 18 15 22 22 N 1.31618 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99847 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46702 * 90.00414 * 23 21 19 25 25 H 1.48498 * 109.47242 * 210.00184 * 23 21 19 26 26 H 1.48498 * 109.47432 * 330.00430 * 23 21 19 27 27 C 1.46930 * 120.63380 * 176.23297 * 11 9 8 28 28 H 1.09007 * 109.46999 * 59.99530 * 1 2 3 29 29 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46964 * 300.00092 * 1 2 3 31 31 H 1.08002 * 120.78153 * 0.02562 * 4 3 2 32 32 H 1.07997 * 120.27901 * 179.75397 * 5 4 3 33 33 H 1.08005 * 119.46691 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.58353 * 6.57914 * 12 11 9 35 35 H 1.09007 * 109.70386 * 246.22922 * 12 11 9 36 36 H 1.09003 * 109.49544 * 174.58845 * 13 12 11 37 37 H 1.09000 * 109.49279 * 294.64848 * 13 12 11 38 38 H 1.09004 * 109.46333 * 58.67661 * 14 13 12 39 39 H 1.09004 * 109.45819 * 178.63026 * 14 13 12 40 40 H 1.09003 * 109.46579 * 300.13296 * 16 15 14 41 41 H 1.09001 * 109.47274 * 60.12656 * 16 15 14 42 42 H 0.96699 * 114.00410 * 179.97438 * 17 16 15 43 43 H 0.96993 * 120.00390 * 359.85286 * 18 15 14 44 44 H 0.96998 * 119.99906 * 180.02562 * 22 21 19 45 45 H 1.09004 * 109.58434 * 353.42008 * 27 11 9 46 46 H 1.09006 * 109.58833 * 113.69444 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2971 2.3844 0.0048 5 6 1.9697 3.5928 -0.0015 6 6 3.3574 3.6010 -0.0065 7 7 4.0420 2.4798 -0.0059 8 6 3.4410 1.2949 0.0000 9 6 4.2531 0.0597 -0.0001 10 8 3.9121 -0.8919 -0.6754 11 7 5.3716 -0.0116 0.7484 12 6 5.8414 1.1566 1.5055 13 6 6.0295 0.7515 2.9708 14 6 6.9595 -0.4615 3.0459 15 6 6.3288 -1.6372 2.2962 16 6 7.2444 -2.8587 2.3991 17 8 6.6564 -3.9552 1.6963 18 7 5.0257 -1.9508 2.8876 19 6 4.2699 -2.9721 2.3766 20 1 4.6347 -3.5465 1.5379 21 6 3.0349 -3.2690 2.9366 22 7 2.3087 -4.2509 2.4458 23 14 2.4044 -2.2759 4.3877 24 1 1.6219 -1.1157 3.8908 25 1 1.5357 -3.1329 5.2340 26 1 3.5542 -1.7896 5.1918 27 6 6.1442 -1.2592 0.8233 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2176 2.3528 0.0090 32 1 1.4197 4.5222 -0.0020 33 1 3.8830 4.5445 -0.0110 34 1 5.1034 1.9560 1.4390 35 1 6.7914 1.5016 1.0969 36 1 6.4688 1.5816 3.5242 37 1 5.0627 0.4963 3.4046 38 1 7.9180 -0.2131 2.5902 39 1 7.1141 -0.7365 4.0893 40 1 8.2141 -2.6238 1.9602 41 1 7.3755 -3.1273 3.4473 42 1 7.1839 -4.7653 1.7191 43 1 4.6983 -1.4352 3.6411 44 1 1.4456 -4.4581 2.8369 45 1 5.6058 -2.0539 0.3067 46 1 7.1183 -1.1144 0.3560 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733822958.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:45 Heat of formation + Delta-G solvation = -68.576897 kcal Electronic energy + Delta-G solvation = -31610.293026 eV Core-core repulsion = 27500.865575 eV Total energy + Delta-G solvation = -4109.427451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.08936 -40.82152 -39.29932 -39.02936 -37.12849 -35.61857 -34.09274 -33.24196 -32.66701 -31.88505 -30.95943 -28.50579 -27.30491 -26.55751 -25.27540 -24.82487 -23.87087 -22.90374 -21.42863 -19.98015 -19.66530 -19.06254 -18.50802 -18.02793 -17.85585 -17.30578 -16.82217 -16.68557 -16.25674 -16.10116 -15.72536 -15.62157 -15.31757 -14.99702 -14.75543 -14.63521 -14.48709 -14.42599 -14.26485 -13.83469 -13.51523 -13.42259 -13.34476 -13.03077 -12.75566 -12.62680 -12.49136 -12.46892 -12.06369 -11.91479 -11.77126 -11.41223 -11.35841 -11.22490 -10.92040 -10.79695 -10.56599 -10.32376 -9.64955 -9.45085 -9.04060 -7.80734 -5.11403 -0.26155 0.20553 1.25268 1.31834 1.37100 1.77178 2.09736 2.19939 2.55614 2.72713 3.22142 3.36815 3.53651 3.60001 3.69936 3.74366 3.98628 3.99315 4.05055 4.11465 4.14998 4.21182 4.22073 4.30220 4.44960 4.56217 4.57008 4.60305 4.73768 4.77283 4.81611 4.89473 4.92870 4.99990 5.00735 5.07386 5.17112 5.38363 5.41553 5.46824 5.77760 6.14138 6.20584 6.46244 6.54132 6.75678 7.13243 7.32086 7.32981 7.99845 8.16132 9.42605 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.006183 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.167350 B = 4527.649658 C = 5767.303817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.328 6.328 3 C 0.103 3.897 4 C -0.173 4.173 5 C -0.090 4.090 6 C 0.054 3.946 7 N -0.425 5.425 8 C 0.014 3.986 9 C 0.564 3.436 10 O -0.574 6.574 11 N -0.583 5.583 12 C 0.100 3.900 13 C -0.131 4.131 14 C -0.111 4.111 15 C 0.180 3.820 16 C 0.075 3.925 17 O -0.574 6.574 18 N -0.731 5.731 19 C -0.163 4.163 20 H 0.076 0.924 21 C -0.083 4.083 22 N -0.994 5.994 23 Si 0.936 3.064 24 H -0.297 1.297 25 H -0.302 1.302 26 H -0.252 1.252 27 C 0.117 3.883 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.172 0.828 32 H 0.194 0.806 33 H 0.210 0.790 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.033 0.967 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.374 0.626 43 H 0.357 0.643 44 H 0.245 0.755 45 H 0.047 0.953 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.038 22.845 -0.593 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.053 3.947 4 C -0.199 4.199 5 C -0.109 4.109 6 C -0.107 4.107 7 N -0.138 5.138 8 C -0.121 4.121 9 C 0.351 3.649 10 O -0.453 6.453 11 N -0.313 5.313 12 C -0.021 4.021 13 C -0.169 4.169 14 C -0.149 4.149 15 C 0.090 3.910 16 C -0.005 4.005 17 O -0.379 6.379 18 N -0.373 5.373 19 C -0.295 4.295 20 H 0.093 0.907 21 C -0.271 4.271 22 N -0.649 5.649 23 Si 0.767 3.233 24 H -0.225 1.225 25 H -0.229 1.229 26 H -0.176 1.176 27 C -0.008 4.008 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.091 0.909 31 H 0.190 0.810 32 H 0.211 0.789 33 H 0.227 0.773 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.052 0.948 38 H 0.125 0.875 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.221 0.779 43 H 0.191 0.809 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 6.359 22.382 -1.168 23.297 hybrid contribution -1.875 -1.001 0.834 2.283 sum 4.484 21.381 -0.334 21.849 Atomic orbital electron populations 1.23391 0.76308 1.05004 1.02992 1.86371 1.23753 1.26870 1.86921 1.20465 0.92655 0.86767 0.94821 1.22147 1.02388 0.90910 1.04434 1.22727 0.95610 0.99003 0.93539 1.23628 0.92509 0.96619 0.97987 1.67733 1.39681 0.97002 1.09383 1.20325 0.89144 0.92975 1.09688 1.18170 0.80571 0.86113 0.80012 1.90781 1.70553 1.39377 1.44549 1.47774 1.24187 1.13393 1.45951 1.22298 1.02046 0.87240 0.90539 1.21943 0.99318 0.99064 0.96623 1.21701 0.99514 0.92690 1.00990 1.20419 0.85378 0.93546 0.91689 1.22700 0.95036 0.87343 0.95378 1.86900 1.51071 1.23217 1.76759 1.42799 1.18871 1.38316 1.37346 1.19219 0.96301 1.04478 1.09490 0.90650 1.25325 0.98252 1.00667 1.02872 1.69906 1.13597 1.35237 1.46127 0.85639 0.78505 0.78019 0.81133 1.22522 1.22903 1.17649 1.21936 0.94562 0.85580 0.98686 0.89387 0.88916 0.90928 0.81016 0.78917 0.77304 0.87768 0.88817 0.86859 0.94822 0.87510 0.90374 0.91232 0.93825 0.77888 0.80893 0.94635 0.93472 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.83 113.37 1.11 1.64 16 2 O -0.33 -14.32 9.26 -74.22 -0.69 -15.00 16 3 C 0.10 3.73 6.67 22.93 0.15 3.89 16 4 C -0.17 -3.93 9.13 22.55 0.21 -3.72 16 5 C -0.09 -1.35 10.10 22.41 0.23 -1.12 16 6 C 0.05 0.95 11.17 84.89 0.95 1.90 16 7 N -0.43 -12.00 7.28 -184.63 -1.34 -13.35 16 8 C 0.01 0.55 6.01 41.93 0.25 0.80 16 9 C 0.56 26.66 7.28 86.78 0.63 27.30 16 10 O -0.57 -33.59 15.54 11.43 0.18 -33.41 16 11 N -0.58 -23.29 2.89 -822.30 -2.38 -25.66 16 12 C 0.10 2.85 6.02 86.36 0.52 3.37 16 13 C -0.13 -3.43 5.91 30.67 0.18 -3.24 16 14 C -0.11 -2.91 4.76 30.62 0.15 -2.76 16 15 C 0.18 6.82 0.68 3.68 0.00 6.82 16 16 C 0.08 2.58 6.08 71.98 0.44 3.02 16 17 O -0.57 -24.29 10.11 -148.98 -1.51 -25.79 16 18 N -0.73 -35.79 4.55 -303.01 -1.38 -37.16 16 19 C -0.16 -10.06 8.70 84.03 0.73 -9.32 16 20 H 0.08 5.27 5.51 -2.91 -0.02 5.25 16 21 C -0.08 -5.40 5.50 84.86 0.47 -4.93 16 22 N -0.99 -70.50 13.97 21.65 0.30 -70.19 16 23 Si 0.94 50.26 27.74 68.60 1.90 52.16 16 24 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 25 H -0.30 -16.33 7.11 99.48 0.71 -15.62 16 26 H -0.25 -11.99 6.52 99.48 0.65 -11.34 16 27 C 0.12 4.85 4.84 86.36 0.42 5.27 16 28 H 0.09 1.94 7.71 -2.38 -0.02 1.92 16 29 H 0.09 2.97 8.14 -2.39 -0.02 2.96 16 30 H 0.07 1.82 7.69 -2.39 -0.02 1.80 16 31 H 0.17 2.78 6.46 -2.91 -0.02 2.76 16 32 H 0.19 0.89 8.06 -2.91 -0.02 0.87 16 33 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.10 2.95 4.57 -2.39 -0.01 2.93 16 35 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.03 1.11 6.75 -2.39 -0.02 1.09 16 38 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.37 11.91 9.12 -74.06 -0.68 11.24 16 43 H 0.36 17.19 4.29 -92.71 -0.40 16.79 16 44 H 0.24 16.67 8.31 -92.71 -0.77 15.90 16 45 H 0.05 2.56 5.72 -2.38 -0.01 2.55 16 46 H 0.08 2.72 8.14 -2.38 -0.02 2.70 16 Total: -1.00 -101.70 362.15 1.43 -100.27 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.10 Total: 39.24 kcal Atomic # 6 Polarization: 22.46 SS G_CDS: 6.44 Total: 28.90 kcal Atomic # 7 Polarization: -141.57 SS G_CDS: -4.80 Total: -146.37 kcal Atomic # 8 Polarization: -72.19 SS G_CDS: -2.02 Total: -74.20 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 1.90 Total: 52.16 kcal Total: -101.70 1.43 -100.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733822958.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.697 kcal (2) G-P(sol) polarization free energy of solvation -101.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds