Wall clock time and date at job start Tue Mar 31 2020 18:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36018 * 117.00262 * 2 1 4 4 C 1.35851 * 120.31021 * 359.97438 * 3 2 1 5 5 N 1.35450 * 120.77317 * 180.02562 * 4 3 2 6 6 H 0.97003 * 119.29161 * 179.97438 * 5 4 3 7 7 C 1.36427 * 121.40992 * 359.97438 * 5 4 3 8 8 C 1.48067 * 119.71849 * 179.97438 * 7 5 4 9 9 O 1.21512 * 120.00312 * 153.08113 * 8 7 5 10 10 N 1.34776 * 119.99953 * 333.08187 * 8 7 5 11 11 C 1.46500 * 120.00059 * 359.53604 * 10 8 7 12 12 C 1.46500 * 120.00155 * 179.53117 * 10 8 7 13 13 H 1.09001 * 109.46890 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47165 * 120.00350 * 12 10 8 15 15 N 1.46502 * 109.47005 * 305.00123 * 14 12 10 16 16 C 1.36939 * 120.00085 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99832 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99695 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99736 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47184 * 90.00047 * 20 18 16 22 22 H 1.48502 * 109.47241 * 210.00416 * 20 18 16 23 23 H 1.48506 * 109.47346 * 330.00273 * 20 18 16 24 24 C 1.53000 * 109.47352 * 240.00407 * 12 10 8 25 25 C 1.53004 * 117.49997 * 248.74580 * 24 12 10 26 26 C 1.52998 * 117.49897 * 180.08819 * 24 12 10 27 27 C 1.36180 * 120.56086 * 0.26108 * 7 5 4 28 28 C 1.41569 * 120.31521 * 180.02562 * 3 2 1 29 29 O 1.22262 * 120.65725 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47403 * 300.00718 * 1 2 3 32 32 H 1.09006 * 109.46495 * 60.00535 * 1 2 3 33 33 H 1.07997 * 119.61548 * 0.02562 * 4 3 2 34 34 H 1.08996 * 109.47450 * 83.51395 * 11 10 8 35 35 H 1.09005 * 109.46902 * 323.50756 * 11 10 8 36 36 H 1.09000 * 109.47111 * 203.50971 * 11 10 8 37 37 H 1.08994 * 109.47481 * 64.99719 * 14 12 10 38 38 H 1.09004 * 109.47265 * 185.00710 * 14 12 10 39 39 H 0.97001 * 119.99937 * 359.97438 * 15 14 12 40 40 H 0.97006 * 119.99939 * 179.97438 * 19 18 16 41 41 H 1.09002 * 115.55101 * 34.41274 * 24 12 10 42 42 H 1.09004 * 117.49476 * 359.97438 * 25 24 12 43 43 H 1.08996 * 117.50057 * 145.01680 * 25 24 12 44 44 H 1.09005 * 117.49698 * 214.97627 * 26 24 12 45 45 H 1.08999 * 117.50328 * 359.97079 * 26 24 12 46 46 H 1.07999 * 120.39974 * 179.72681 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9181 3.5670 -0.0010 6 1 1.3733 4.3696 -0.0018 7 6 3.2774 3.6829 -0.0006 8 6 3.8997 5.0264 -0.0017 9 8 5.0062 5.1841 0.4750 10 7 3.2387 6.0747 -0.5316 11 6 1.9089 5.8828 -1.1155 12 6 3.8499 7.4060 -0.5235 13 1 4.8313 7.3524 -0.0521 14 6 4.0020 7.9061 -1.9615 15 7 4.7549 6.9224 -2.7435 16 6 5.0168 7.1555 -4.0673 17 1 4.6686 8.0648 -4.5346 18 6 5.7306 6.2235 -4.8081 19 7 6.1552 5.1157 -4.2384 20 14 6.0872 6.5412 -6.6140 21 1 7.3777 7.2643 -6.7440 22 1 6.1699 5.2469 -7.3374 23 1 4.9974 7.3649 -7.1964 24 6 2.9591 8.3716 0.2607 25 6 2.2465 9.4731 -0.5267 26 6 3.4268 9.8232 0.3830 27 6 4.0669 2.5732 -0.0048 28 6 3.4599 1.2937 -0.0005 29 8 4.1430 0.2797 -0.0015 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.2345 2.2974 -0.0005 34 1 1.1577 5.9125 -0.3263 35 1 1.8691 4.9168 -1.6190 36 1 1.7104 6.6764 -1.8359 37 1 3.0157 8.0443 -2.4043 38 1 4.5367 8.8560 -1.9612 39 1 5.0685 6.1062 -2.3235 40 1 6.6538 4.4643 -4.7563 41 1 2.4318 7.9393 1.1111 42 1 2.4127 9.5101 -1.6033 43 1 1.2506 9.7657 -0.1940 44 1 3.2068 10.3461 1.3138 45 1 4.3693 10.0903 -0.0948 46 1 5.1427 2.6680 -0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734301506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:16 Heat of formation + Delta-G solvation = 7.770184 kcal Electronic energy + Delta-G solvation = -29922.922054 eV Core-core repulsion = 25816.805261 eV Total energy + Delta-G solvation = -4106.116794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.58715 -40.03337 -38.44472 -37.75171 -37.54178 -35.32639 -34.18072 -31.60195 -31.42666 -30.60535 -28.46775 -27.67565 -27.09088 -24.90251 -23.73334 -23.17745 -22.67481 -22.04891 -21.04445 -19.47768 -18.73977 -18.09605 -17.29423 -17.20774 -16.58258 -16.28363 -16.14977 -15.79939 -15.52445 -14.91980 -14.57856 -14.52317 -14.42278 -14.11695 -13.99205 -13.60769 -13.30654 -13.16628 -13.12027 -12.95510 -12.73020 -12.38843 -12.17552 -11.71571 -11.63041 -11.54452 -11.44379 -11.19182 -10.86680 -10.81494 -10.57033 -10.19228 -10.09613 -9.86747 -9.76232 -9.42914 -9.38355 -8.92936 -8.66849 -7.65109 -6.98335 -5.78213 -3.09638 0.80716 1.17200 2.50604 2.63664 3.02099 3.16297 3.41181 3.45543 3.48806 3.76374 3.79959 4.09199 4.34009 4.52374 4.60545 4.68742 4.81948 4.87506 4.89372 4.90921 4.95734 5.00855 5.08549 5.16392 5.25129 5.47279 5.51645 5.55709 5.62369 5.70634 5.70993 5.80357 5.83387 6.06849 6.12046 6.19985 6.21568 6.26604 6.47949 6.53945 6.65903 6.73939 7.12163 7.26124 7.64479 8.00676 8.09774 8.38122 9.49913 10.05249 10.39860 11.43336 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.004230 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.922247 B = 6618.081860 C = 8633.888023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.289 6.289 3 C -0.035 4.035 4 C 0.024 3.976 5 N -0.571 5.571 6 H 0.423 0.577 7 C 0.132 3.868 8 C 0.562 3.438 9 O -0.498 6.498 10 N -0.588 5.588 11 C 0.060 3.940 12 C 0.160 3.840 13 H 0.109 0.891 14 C 0.143 3.857 15 N -0.728 5.728 16 C -0.249 4.249 17 H 0.069 0.931 18 C -0.008 4.008 19 N -0.924 5.924 20 Si 0.905 3.095 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.283 1.283 24 C -0.162 4.162 25 C -0.183 4.183 26 C -0.170 4.170 27 C -0.207 4.207 28 C 0.402 3.598 29 O -0.498 6.498 30 H 0.101 0.899 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.167 0.833 34 H 0.053 0.947 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.026 0.974 38 H 0.031 0.969 39 H 0.386 0.614 40 H 0.257 0.743 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 2.195 11.855 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.200 6.200 3 C -0.087 4.087 4 C -0.103 4.103 5 N -0.191 5.191 6 H 0.267 0.733 7 C 0.020 3.980 8 C 0.347 3.653 9 O -0.371 6.371 10 N -0.320 5.320 11 C -0.083 4.083 12 C 0.058 3.942 13 H 0.127 0.873 14 C 0.015 3.985 15 N -0.373 5.373 16 C -0.380 4.380 17 H 0.087 0.913 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.736 3.264 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.208 1.208 24 C -0.181 4.181 25 C -0.220 4.220 26 C -0.208 4.208 27 C -0.234 4.234 28 C 0.292 3.708 29 O -0.382 6.382 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.184 0.816 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.220 0.780 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.118 0.882 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -17.252 1.585 11.942 21.042 hybrid contribution -0.468 0.426 -1.039 1.217 sum -17.720 2.011 10.903 20.903 Atomic orbital electron populations 1.23103 0.79468 1.04307 1.00793 1.86277 1.20089 1.24498 1.89183 1.20427 0.94830 0.84576 1.08852 1.21621 0.98576 0.84523 1.05548 1.41707 1.05338 1.08861 1.63244 0.73251 1.20280 0.82861 0.95687 0.99161 1.17913 0.85493 0.82733 0.79185 1.90860 1.17969 1.83099 1.45211 1.47580 1.18220 1.08291 1.57905 1.22093 0.82986 1.04935 0.98293 1.20988 0.96708 0.79121 0.97402 0.87295 1.21123 0.95567 0.93533 0.88324 1.42296 1.65174 1.21450 1.08351 1.19135 1.29619 1.03130 0.86113 0.91284 1.24760 1.00745 0.96784 0.98174 1.69666 1.41980 1.09841 1.35681 0.86236 0.78121 0.76900 0.85128 1.21635 1.21720 1.20835 1.22553 1.03324 0.90514 1.01719 1.23221 0.96575 1.02728 0.99495 1.22965 0.99539 0.96637 1.01619 1.22482 1.02382 0.90333 1.08169 1.16778 0.86059 0.89808 0.78178 1.90846 1.65757 1.37535 1.44040 0.88079 0.92949 0.92765 0.81582 0.92888 0.90379 0.88453 0.95614 0.95125 0.78018 0.93288 0.87863 0.87387 0.89177 0.88907 0.88195 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.29 -3.92 10.33 -35.62 -0.37 -4.28 16 3 C -0.04 -0.50 6.71 -39.17 -0.26 -0.76 16 4 C 0.02 0.23 10.22 -16.81 -0.17 0.06 16 5 N -0.57 -5.66 4.03 -9.58 -0.04 -5.70 16 6 H 0.42 2.88 4.67 -40.82 -0.19 2.68 16 7 C 0.13 1.91 6.16 -82.53 -0.51 1.40 16 8 C 0.56 9.19 7.24 -12.23 -0.09 9.10 16 9 O -0.50 -9.96 15.91 5.36 0.09 -9.87 16 10 N -0.59 -8.23 2.24 -174.97 -0.39 -8.62 16 11 C 0.06 0.61 8.09 59.85 0.48 1.09 16 12 C 0.16 2.40 2.58 -67.93 -0.18 2.22 16 13 H 0.11 1.92 6.90 -51.93 -0.36 1.56 16 14 C 0.14 2.57 4.16 -4.04 -0.02 2.55 16 15 N -0.73 -17.63 5.43 -59.91 -0.33 -17.96 16 16 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 17 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 19 N -0.92 -28.13 13.06 55.49 0.72 -27.41 16 20 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 24 C -0.16 -1.78 5.48 -90.62 -0.50 -2.27 16 25 C -0.18 -1.79 9.59 -26.69 -0.26 -2.05 16 26 C -0.17 -1.74 9.94 -26.70 -0.27 -2.00 16 27 C -0.21 -3.55 9.52 -39.03 -0.37 -3.93 16 28 C 0.40 7.23 6.78 -37.02 -0.25 6.98 16 29 O -0.50 -10.89 17.71 -11.15 -0.20 -11.09 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16 32 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 33 H 0.17 0.83 6.21 -52.49 -0.33 0.50 16 34 H 0.05 0.31 6.80 -51.93 -0.35 -0.05 16 35 H 0.08 0.83 6.17 -51.93 -0.32 0.51 16 36 H 0.10 1.04 6.54 -51.93 -0.34 0.70 16 37 H 0.03 0.44 5.33 -51.93 -0.28 0.17 16 38 H 0.03 0.57 7.44 -51.93 -0.39 0.18 16 39 H 0.39 10.25 7.06 -40.82 -0.29 9.96 16 40 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.11 1.20 5.80 -51.93 -0.30 0.90 16 43 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.10 1.12 7.66 -51.93 -0.40 0.72 16 46 H 0.17 3.11 7.82 -52.49 -0.41 2.70 16 LS Contribution 373.79 15.07 5.63 5.63 Total: -1.00 -37.64 373.79 -7.52 -45.16 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -5.98 Total: 10.61 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -1.64 Total: 6.32 kcal Atomic # 7 Polarization: -59.66 SS G_CDS: -0.03 Total: -59.69 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.48 Total: -25.25 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.64 -7.52 -45.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734301506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.933 kcal (2) G-P(sol) polarization free energy of solvation -37.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds