Wall clock time and date at job start Tue Mar 31 2020 18:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36018 * 117.00262 * 2 1 4 4 C 1.35851 * 120.31021 * 359.97438 * 3 2 1 5 5 N 1.35450 * 120.77317 * 180.02562 * 4 3 2 6 6 H 0.97003 * 119.29161 * 179.97438 * 5 4 3 7 7 C 1.36427 * 121.40992 * 359.97438 * 5 4 3 8 8 C 1.48067 * 119.71849 * 179.97438 * 7 5 4 9 9 O 1.21512 * 120.00312 * 153.08113 * 8 7 5 10 10 N 1.34776 * 119.99953 * 333.08187 * 8 7 5 11 11 C 1.46500 * 120.00059 * 359.53604 * 10 8 7 12 12 C 1.46500 * 120.00155 * 179.53117 * 10 8 7 13 13 H 1.09001 * 109.46890 * 0.02562 * 12 10 8 14 14 C 1.52997 * 109.47165 * 120.00350 * 12 10 8 15 15 N 1.46502 * 109.47005 * 305.00123 * 14 12 10 16 16 C 1.36939 * 120.00085 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99832 * 0.02562 * 16 15 14 18 18 C 1.38811 * 119.99695 * 179.97438 * 16 15 14 19 19 N 1.31617 * 120.00228 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99736 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47184 * 90.00047 * 20 18 16 22 22 H 1.48502 * 109.47241 * 210.00416 * 20 18 16 23 23 H 1.48506 * 109.47346 * 330.00273 * 20 18 16 24 24 C 1.53000 * 109.47352 * 240.00407 * 12 10 8 25 25 C 1.53004 * 117.49997 * 248.74580 * 24 12 10 26 26 C 1.52998 * 117.49897 * 180.08819 * 24 12 10 27 27 C 1.36180 * 120.56086 * 0.26108 * 7 5 4 28 28 C 1.41569 * 120.31521 * 180.02562 * 3 2 1 29 29 O 1.22262 * 120.65725 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47403 * 300.00718 * 1 2 3 32 32 H 1.09006 * 109.46495 * 60.00535 * 1 2 3 33 33 H 1.07997 * 119.61548 * 0.02562 * 4 3 2 34 34 H 1.08996 * 109.47450 * 83.51395 * 11 10 8 35 35 H 1.09005 * 109.46902 * 323.50756 * 11 10 8 36 36 H 1.09000 * 109.47111 * 203.50971 * 11 10 8 37 37 H 1.08994 * 109.47481 * 64.99719 * 14 12 10 38 38 H 1.09004 * 109.47265 * 185.00710 * 14 12 10 39 39 H 0.97001 * 119.99937 * 359.97438 * 15 14 12 40 40 H 0.97006 * 119.99939 * 179.97438 * 19 18 16 41 41 H 1.09002 * 115.55101 * 34.41274 * 24 12 10 42 42 H 1.09004 * 117.49476 * 359.97438 * 25 24 12 43 43 H 1.08996 * 117.50057 * 145.01680 * 25 24 12 44 44 H 1.09005 * 117.49698 * 214.97627 * 26 24 12 45 45 H 1.08999 * 117.50328 * 359.97079 * 26 24 12 46 46 H 1.07999 * 120.39974 * 179.72681 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2119 0.0000 4 6 1.3129 2.3553 -0.0005 5 7 1.9181 3.5670 -0.0010 6 1 1.3733 4.3696 -0.0018 7 6 3.2774 3.6829 -0.0006 8 6 3.8997 5.0264 -0.0017 9 8 5.0062 5.1841 0.4750 10 7 3.2387 6.0747 -0.5316 11 6 1.9089 5.8828 -1.1155 12 6 3.8499 7.4060 -0.5235 13 1 4.8313 7.3524 -0.0521 14 6 4.0020 7.9061 -1.9615 15 7 4.7549 6.9224 -2.7435 16 6 5.0168 7.1555 -4.0673 17 1 4.6686 8.0648 -4.5346 18 6 5.7306 6.2235 -4.8081 19 7 6.1552 5.1157 -4.2384 20 14 6.0872 6.5412 -6.6140 21 1 7.3777 7.2643 -6.7440 22 1 6.1699 5.2469 -7.3374 23 1 4.9974 7.3649 -7.1964 24 6 2.9591 8.3716 0.2607 25 6 2.2465 9.4731 -0.5267 26 6 3.4268 9.8232 0.3830 27 6 4.0669 2.5732 -0.0048 28 6 3.4599 1.2937 -0.0005 29 8 4.1430 0.2797 -0.0015 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 0.2345 2.2974 -0.0005 34 1 1.1577 5.9125 -0.3263 35 1 1.8691 4.9168 -1.6190 36 1 1.7104 6.6764 -1.8359 37 1 3.0157 8.0443 -2.4043 38 1 4.5367 8.8560 -1.9612 39 1 5.0685 6.1062 -2.3235 40 1 6.6538 4.4643 -4.7563 41 1 2.4318 7.9393 1.1111 42 1 2.4127 9.5101 -1.6033 43 1 1.2506 9.7657 -0.1940 44 1 3.2068 10.3461 1.3138 45 1 4.3693 10.0903 -0.0948 46 1 5.1427 2.6680 -0.0089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734301506.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:15 Heat of formation + Delta-G solvation = -19.997639 kcal Electronic energy + Delta-G solvation = -29924.126157 eV Core-core repulsion = 25816.805261 eV Total energy + Delta-G solvation = -4107.320897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.74236 -41.18975 -39.44604 -38.87457 -38.80720 -36.50391 -35.93838 -33.21285 -32.80104 -31.87939 -29.78299 -28.36958 -28.20540 -26.49359 -25.08673 -24.23694 -23.97613 -23.08367 -22.18298 -20.57082 -19.88614 -19.22431 -19.08604 -18.41658 -17.78248 -17.37847 -17.21404 -16.98594 -16.64938 -16.32305 -15.94104 -15.63591 -15.50384 -15.26329 -15.09411 -15.03388 -14.75927 -14.65455 -14.31710 -14.17702 -13.84661 -13.75562 -13.13070 -13.05899 -12.94873 -12.76481 -12.38136 -12.33372 -12.23732 -12.21630 -12.00296 -11.78610 -11.64549 -11.18628 -10.99081 -10.83997 -10.70161 -10.52997 -9.82194 -9.01955 -8.77144 -7.95010 -5.25462 -0.47230 0.13276 1.35999 1.40614 1.44732 1.46957 1.55280 1.90001 2.30744 2.53651 2.54557 2.94837 3.00876 3.39043 3.51972 3.64261 3.67720 3.80192 3.89978 4.02893 4.11613 4.16551 4.24119 4.32607 4.35993 4.38457 4.42086 4.50257 4.57898 4.66071 4.78631 4.83400 4.87339 4.92539 5.00560 5.07465 5.09731 5.21224 5.35537 5.38547 5.47580 5.50396 5.81611 6.07403 6.23792 6.29227 6.75107 6.90319 7.31090 8.07086 8.28134 9.27449 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008839 B = 0.004230 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3166.922247 B = 6618.081860 C = 8633.888023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.324 6.324 3 C -0.060 4.060 4 C 0.072 3.928 5 N -0.534 5.534 6 H 0.444 0.556 7 C 0.154 3.846 8 C 0.554 3.446 9 O -0.548 6.548 10 N -0.579 5.579 11 C 0.043 3.957 12 C 0.167 3.833 13 H 0.072 0.928 14 C 0.143 3.857 15 N -0.743 5.743 16 C -0.241 4.241 17 H 0.082 0.918 18 C -0.075 4.075 19 N -0.969 5.969 20 Si 0.970 3.030 21 H -0.292 1.292 22 H -0.301 1.301 23 H -0.261 1.261 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.175 4.175 27 C -0.243 4.243 28 C 0.378 3.622 29 O -0.573 6.573 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.236 0.764 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.052 0.948 38 H 0.029 0.971 39 H 0.370 0.630 40 H 0.248 0.752 41 H 0.127 0.873 42 H 0.094 0.906 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.019 5.066 12.045 27.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.237 6.237 3 C -0.110 4.110 4 C -0.056 4.056 5 N -0.154 5.154 6 H 0.294 0.706 7 C 0.039 3.961 8 C 0.340 3.660 9 O -0.425 6.425 10 N -0.310 5.310 11 C -0.098 4.098 12 C 0.063 3.937 13 H 0.090 0.910 14 C 0.016 3.984 15 N -0.386 5.386 16 C -0.372 4.372 17 H 0.100 0.900 18 C -0.267 4.267 19 N -0.620 5.620 20 Si 0.799 3.201 21 H -0.219 1.219 22 H -0.228 1.228 23 H -0.185 1.185 24 C -0.180 4.180 25 C -0.201 4.201 26 C -0.213 4.213 27 C -0.271 4.271 28 C 0.274 3.726 29 O -0.464 6.464 30 H 0.129 0.871 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.252 0.748 34 H 0.133 0.867 35 H 0.093 0.907 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.201 0.799 40 H 0.056 0.944 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.139 0.861 44 H 0.133 0.867 45 H 0.100 0.900 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -23.091 4.588 12.123 26.481 hybrid contribution 1.152 -0.241 -1.072 1.591 sum -21.939 4.347 11.052 24.948 Atomic orbital electron populations 1.23543 0.76100 1.06118 1.03198 1.86235 1.23568 1.24401 1.89544 1.20017 0.93125 0.86643 1.11191 1.22417 1.00799 0.82241 1.00188 1.41848 1.03578 1.10478 1.59516 0.70584 1.19876 0.84619 0.93825 0.97816 1.18180 0.85102 0.83609 0.79139 1.90837 1.20173 1.83830 1.47651 1.47671 1.19362 1.07259 1.56738 1.22527 0.81902 1.04904 1.00469 1.20773 0.96706 0.80535 0.95646 0.91003 1.21341 0.95481 0.91921 0.89667 1.42549 1.65865 1.22063 1.08107 1.19604 1.27631 1.02713 0.87295 0.90019 1.25573 1.01798 0.96943 1.02399 1.69862 1.43902 1.11136 1.37054 0.85192 0.78204 0.76313 0.80350 1.21901 1.22835 1.18539 1.22391 1.03400 0.89879 1.02292 1.23251 0.97719 1.00684 0.98488 1.23055 0.99307 0.96100 1.02833 1.22206 1.01464 0.91790 1.11620 1.17248 0.88468 0.88956 0.77890 1.90785 1.67476 1.39069 1.49023 0.87060 0.89987 0.90448 0.74846 0.86701 0.90724 0.88260 0.93078 0.95358 0.79891 0.94366 0.85524 0.88775 0.86076 0.86701 0.90048 0.85020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.16 16 2 O -0.32 -8.51 10.33 -78.62 -0.81 -9.32 16 3 C -0.06 -1.62 6.71 22.54 0.15 -1.47 16 4 C 0.07 1.05 10.22 83.58 0.85 1.90 16 5 N -0.53 -8.49 4.03 -184.21 -0.74 -9.23 16 6 H 0.44 3.22 4.67 -92.71 -0.43 2.79 16 7 C 0.15 4.46 6.16 40.56 0.25 4.71 16 8 C 0.55 18.45 7.24 86.85 0.63 19.08 16 9 O -0.55 -23.58 15.91 -3.75 -0.06 -23.64 16 10 N -0.58 -15.25 2.24 -825.77 -1.85 -17.10 16 11 C 0.04 0.67 8.09 127.77 1.03 1.71 16 12 C 0.17 4.80 2.58 44.99 0.12 4.92 16 13 H 0.07 2.64 6.90 -2.39 -0.02 2.62 16 14 C 0.14 4.97 4.16 86.38 0.36 5.33 16 15 N -0.74 -36.34 5.43 -343.45 -1.87 -38.21 16 16 C -0.24 -13.01 9.99 84.03 0.84 -12.17 16 17 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 18 C -0.07 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.97 -61.45 13.06 21.65 0.28 -61.16 16 20 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 23 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 24 C -0.16 -2.96 5.48 -10.79 -0.06 -3.02 16 25 C -0.16 -2.47 9.59 30.62 0.29 -2.18 16 26 C -0.18 -3.06 9.94 30.62 0.30 -2.76 16 27 C -0.24 -9.23 9.52 22.63 0.22 -9.01 16 28 C 0.38 14.80 6.78 23.93 0.16 14.97 16 29 O -0.57 -28.13 17.71 8.95 0.16 -27.98 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.08 0.39 7.66 -2.39 -0.02 0.37 16 32 H 0.08 0.47 7.66 -2.38 -0.02 0.45 16 33 H 0.24 0.35 6.21 -2.91 -0.02 0.33 16 34 H 0.12 0.43 6.80 -2.39 -0.02 0.42 16 35 H 0.07 1.25 6.17 -2.38 -0.01 1.23 16 36 H 0.10 1.63 6.54 -2.39 -0.02 1.61 16 37 H 0.05 1.58 5.33 -2.39 -0.01 1.56 16 38 H 0.03 1.03 7.44 -2.39 -0.02 1.01 16 39 H 0.37 20.40 7.06 -92.71 -0.65 19.75 16 40 H 0.25 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.09 1.71 5.80 -2.39 -0.01 1.70 16 43 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 45 H 0.08 1.73 7.66 -2.39 -0.02 1.71 16 46 H 0.13 5.79 7.82 -2.91 -0.02 5.77 16 Total: -1.00 -95.18 373.79 3.82 -91.36 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -0.04 Total: 27.67 kcal Atomic # 6 Polarization: 12.58 SS G_CDS: 6.73 Total: 19.31 kcal Atomic # 7 Polarization: -121.53 SS G_CDS: -4.18 Total: -125.71 kcal Atomic # 8 Polarization: -60.22 SS G_CDS: -0.71 Total: -60.94 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -95.18 3.82 -91.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734301506.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.359 kcal (2) G-P(sol) polarization free energy of solvation -95.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds