Wall clock time and date at job start Tue Mar 31 2020 18:38:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36935 * 120.00396 * 2 1
4 4 H 1.07999 * 119.99692 * 325.28364 * 3 2 1
5 5 C 1.38806 * 120.00390 * 145.27341 * 3 2 1
6 6 N 1.31618 * 120.00496 * 158.61582 * 5 3 2
7 7 Si 1.86804 * 119.99861 * 338.62210 * 5 3 2
8 8 H 1.48497 * 109.47516 * 95.39178 * 7 5 3
9 9 H 1.48502 * 109.47196 * 215.39314 * 7 5 3
10 10 H 1.48505 * 109.46814 * 335.38860 * 7 5 3
11 11 C 1.46501 * 119.99829 * 180.02562 * 2 1 3
12 12 C 1.52995 * 109.47424 * 89.99706 * 11 2 1
13 13 H 1.08998 * 109.47282 * 305.00306 * 12 11 2
14 14 O 1.42899 * 109.47024 * 64.99726 * 12 11 2
15 15 C 1.52993 * 109.47569 * 184.99912 * 12 11 2
16 16 N 1.46500 * 109.47730 * 180.02562 * 15 12 11
17 17 C 1.46498 * 119.99862 * 270.00411 * 16 15 12
18 18 C 1.34772 * 119.99479 * 89.99824 * 16 15 12
19 19 O 1.21523 * 120.00553 * 355.74424 * 18 16 15
20 20 C 1.48043 * 119.99671 * 175.74138 * 18 16 15
21 21 C 1.39551 * 120.00148 * 220.23882 * 20 18 16
22 22 C 1.37816 * 120.00090 * 179.71745 * 21 20 18
23 23 C 1.39560 * 119.99605 * 0.55671 * 22 21 20
24 24 C 1.48037 * 119.99697 * 179.69717 * 23 22 21
25 25 N 1.34777 * 119.99846 * 0.02562 * 24 23 22
26 26 O 1.21526 * 120.00100 * 180.02562 * 24 23 22
27 27 C 1.39551 * 120.00164 * 359.72212 * 23 22 21
28 28 C 1.37816 * 120.00111 * 359.97438 * 27 23 22
29 29 H 1.09005 * 109.47224 * 265.12894 * 1 2 3
30 30 H 1.09003 * 109.47066 * 25.12762 * 1 2 3
31 31 H 1.08993 * 109.47536 * 145.12652 * 1 2 3
32 32 H 0.96992 * 120.00290 * 180.02562 * 6 5 3
33 33 H 1.09002 * 109.46958 * 329.99768 * 11 2 1
34 34 H 1.08996 * 109.46872 * 209.99803 * 11 2 1
35 35 H 0.96702 * 114.00080 * 60.00415 * 14 12 11
36 36 H 1.09002 * 109.47064 * 59.99810 * 15 12 11
37 37 H 1.08998 * 109.47140 * 300.00481 * 15 12 11
38 38 H 1.09001 * 109.47168 * 94.89799 * 17 16 15
39 39 H 1.09004 * 109.46883 * 214.89684 * 17 16 15
40 40 H 1.08994 * 109.47368 * 334.89215 * 17 16 15
41 41 H 1.08005 * 119.99907 * 0.02562 * 21 20 18
42 42 H 1.08004 * 120.00324 * 180.27948 * 22 21 20
43 43 H 0.96994 * 120.00085 * 359.97438 * 25 24 23
44 44 H 0.97011 * 119.99750 * 179.97438 * 25 24 23
45 45 H 1.07999 * 119.99928 * 179.97438 * 27 23 22
46 46 H 1.08001 * 120.00011 * 179.97438 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1858 0.0000
4 1 1.7540 2.0379 -0.5327
5 6 3.3524 1.2929 0.6848
6 7 4.2095 2.2393 0.3656
7 14 3.7545 0.0936 2.0593
8 1 4.5774 -1.0190 1.5207
9 1 4.5114 0.7980 3.1253
10 1 2.4942 -0.4517 2.6249
11 6 2.1975 -1.2688 -0.0006
12 6 2.4524 -1.7099 -1.4432
13 1 1.5061 -1.7541 -1.9822
14 8 3.3208 -0.7717 -2.0817
15 6 3.1059 -3.0932 -1.4457
16 7 3.3506 -3.5154 -2.8270
17 6 2.3262 -4.2680 -3.5553
18 6 4.5181 -3.2112 -3.4277
19 8 5.3361 -2.5212 -2.8519
20 6 4.8040 -3.7178 -4.7891
21 6 6.0832 -4.1744 -5.1093
22 6 6.3479 -4.6514 -6.3749
23 6 5.3396 -4.6669 -7.3397
24 6 5.6256 -5.1731 -8.7011
25 7 6.8596 -5.6193 -9.0087
26 8 4.7478 -5.1862 -9.5414
27 6 4.0619 -4.2049 -7.0211
28 6 3.7956 -3.7338 -5.7537
29 1 -0.3634 -0.0873 1.0240
30 1 -0.3633 0.9304 -0.4364
31 1 -0.3634 -0.8430 -0.5875
32 1 5.0501 2.3139 0.8438
33 1 1.6083 -2.0286 0.5130
34 1 3.1498 -1.1386 0.5133
35 1 4.1836 -0.6805 -1.6546
36 1 2.4435 -3.8088 -0.9586
37 1 4.0522 -3.0490 -0.9066
38 1 1.7212 -3.5802 -4.1459
39 1 2.8066 -4.9891 -4.2166
40 1 1.6888 -4.7948 -2.8452
41 1 6.8646 -4.1586 -4.3638
42 1 7.3367 -5.0090 -6.6215
43 1 7.5604 -5.6084 -8.3382
44 1 7.0470 -5.9513 -9.9008
45 1 3.2817 -4.2166 -7.7679
46 1 2.8068 -3.3758 -5.5073
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001734546532.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:38:49
Heat of formation + Delta-G solvation = -47.120603 kcal
Electronic energy + Delta-G solvation = -29211.773801 eV
Core-core repulsion = 25103.276764 eV
Total energy + Delta-G solvation = -4108.497037 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-40.79186 -39.85669 -38.17741 -37.15460 -35.52326 -34.47581 -34.23746 -31.76655
-31.50388 -31.35819 -29.75593 -27.26247 -26.58440 -25.83832 -24.40285 -22.98771
-21.96040 -21.10210 -20.77953 -19.78014 -18.55949 -17.54351 -17.22832 -17.03544
-16.10517 -15.89273 -15.72024 -15.56939 -15.13499 -14.97700 -14.71398 -14.36467
-14.28783 -13.96966 -13.87108 -13.63619 -13.45765 -13.08787 -12.84640 -12.74016
-12.62672 -12.35547 -12.20308 -11.95784 -11.48741 -11.38023 -11.29633 -10.83647
-10.54197 -10.50023 -10.44269 -10.17199 -9.96215 -9.85864 -9.50125 -9.44546
-9.37527 -9.27543 -8.51189 -8.39465 -6.78492 -5.88304 -3.26598 0.21653
0.97823 2.25630 2.89162 2.92886 3.03439 3.29038 3.47873 3.51071
3.51841 4.21760 4.35853 4.44187 4.55731 4.58236 4.82293 4.91737
4.95576 5.03168 5.11537 5.21242 5.31416 5.44332 5.46357 5.49923
5.60206 5.64646 5.75034 5.79655 5.87068 5.92857 5.98053 6.02775
6.24186 6.29391 6.31058 6.39447 6.50362 6.61241 6.68805 6.75752
6.85165 7.33540 7.79310 8.09416 8.17821 8.44185 8.67030 9.03206
9.78741 10.15527 11.27816
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.021547 B = 0.002633 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1299.156477 B =10633.598234 C =11048.883100
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.127 3.873
2 N -0.604 5.604
3 C -0.249 4.249
4 H 0.078 0.922
5 C 0.031 3.969
6 N -0.900 5.900
7 Si 0.876 3.124
8 H -0.287 1.287
9 H -0.303 1.303
10 H -0.274 1.274
11 C 0.108 3.892
12 C 0.078 3.922
13 H 0.085 0.915
14 O -0.532 6.532
15 C 0.078 3.922
16 N -0.601 5.601
17 C 0.072 3.928
18 C 0.556 3.444
19 O -0.515 6.515
20 C -0.090 4.090
21 C -0.077 4.077
22 C -0.092 4.092
23 C -0.127 4.127
24 C 0.564 3.436
25 N -0.851 5.851
26 O -0.538 6.538
27 C -0.065 4.065
28 C -0.100 4.100
29 H 0.007 0.993
30 H 0.046 0.954
31 H 0.024 0.976
32 H 0.261 0.739
33 H 0.045 0.955
34 H 0.056 0.944
35 H 0.375 0.625
36 H 0.082 0.918
37 H 0.084 0.916
38 H 0.061 0.939
39 H 0.073 0.927
40 H 0.073 0.927
41 H 0.139 0.861
42 H 0.131 0.869
43 H 0.402 0.598
44 H 0.406 0.594
45 H 0.142 0.858
46 H 0.144 0.856
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.450 -21.190 -13.504 25.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.018 4.018
2 N -0.327 5.327
3 C -0.378 4.378
4 H 0.096 0.904
5 C -0.169 4.169
6 N -0.542 5.542
7 Si 0.707 3.293
8 H -0.216 1.216
9 H -0.231 1.231
10 H -0.199 1.199
11 C -0.019 4.019
12 C 0.014 3.986
13 H 0.103 0.897
14 O -0.336 6.336
15 C -0.045 4.045
16 N -0.334 5.334
17 C -0.071 4.071
18 C 0.344 3.656
19 O -0.390 6.390
20 C -0.093 4.093
21 C -0.096 4.096
22 C -0.111 4.111
23 C -0.130 4.130
24 C 0.350 3.650
25 N -0.415 5.415
26 O -0.415 6.415
27 C -0.084 4.084
28 C -0.118 4.118
29 H 0.025 0.975
30 H 0.065 0.935
31 H 0.043 0.957
32 H 0.071 0.929
33 H 0.063 0.937
34 H 0.074 0.926
35 H 0.222 0.778
36 H 0.100 0.900
37 H 0.102 0.898
38 H 0.079 0.921
39 H 0.092 0.908
40 H 0.092 0.908
41 H 0.157 0.843
42 H 0.149 0.851
43 H 0.232 0.768
44 H 0.237 0.763
45 H 0.160 0.840
46 H 0.162 0.838
Dipole moment (debyes) X Y Z Total
from point charges 1.809 -20.571 -13.942 24.916
hybrid contribution 1.203 -0.889 1.170 1.899
sum 3.012 -21.460 -12.771 25.154
Atomic orbital electron populations
1.21047 0.84370 0.99131 0.97274 1.43900 1.00703 1.01762 1.86375
1.18728 1.03653 0.89500 1.25934 0.90439 1.25325 0.96905 0.96565
0.98073 1.69862 1.08255 1.35141 1.40936 0.86985 0.77642 0.80543
0.84093 1.21584 1.23146 1.19883 1.21842 0.97101 0.88858 0.94136
1.22921 0.93341 0.85855 0.96467 0.89702 1.86511 1.29232 1.62299
1.55570 1.22528 1.02444 0.98276 0.81301 1.47588 1.15845 1.55391
1.14545 1.22126 0.91515 0.95852 0.97606 1.18240 0.81732 0.80382
0.85269 1.90808 1.46932 1.36357 1.64949 1.20230 0.94822 0.99691
0.94558 1.21138 0.95608 0.96171 0.96646 1.21194 0.98415 0.98754
0.92727 1.20007 0.95568 1.03867 0.93556 1.18337 0.82392 0.76675
0.87577 1.43763 1.12444 1.67456 1.17836 1.90822 1.45514 1.55226
1.49956 1.21229 0.95895 0.94974 0.96255 1.21680 0.99749 0.97926
0.92480 0.97535 0.93527 0.95708 0.92882 0.93711 0.92618 0.77756
0.90017 0.89788 0.92082 0.90812 0.90783 0.84328 0.85077 0.76837
0.76331 0.83990 0.83800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.13 2.53 10.70 59.85 0.64 3.17 16
2 N -0.60 -14.46 2.52 -181.13 -0.46 -14.92 16
3 C -0.25 -7.09 9.44 -15.06 -0.14 -7.23 16
4 H 0.08 2.42 8.06 -52.49 -0.42 1.99 16
5 C 0.03 0.89 5.34 -17.43 -0.09 0.80 16
6 N -0.90 -27.93 13.97 55.49 0.78 -27.15 16
7 Si 0.88 22.33 24.84 -169.99 -4.22 18.11 16
8 H -0.29 -7.03 6.69 56.52 0.38 -6.65 16
9 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16
10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16
11 C 0.11 2.25 4.20 -4.04 -0.02 2.24 16
12 C 0.08 1.45 3.48 -26.74 -0.09 1.35 16
13 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16
14 O -0.53 -12.13 11.53 -48.36 -0.56 -12.69 16
15 C 0.08 1.15 5.18 -4.05 -0.02 1.13 16
16 N -0.60 -7.96 2.83 -182.63 -0.52 -8.48 16
17 C 0.07 0.64 8.95 59.85 0.54 1.18 16
18 C 0.56 8.42 6.91 -12.24 -0.08 8.33 16
19 O -0.51 -9.87 15.05 -7.78 -0.12 -9.99 16
20 C -0.09 -1.07 5.19 -104.89 -0.54 -1.61 16
21 C -0.08 -0.77 9.62 -39.25 -0.38 -1.15 16
22 C -0.09 -0.71 9.53 -39.24 -0.37 -1.09 16
23 C -0.13 -1.16 5.88 -104.90 -0.62 -1.78 16
24 C 0.56 5.29 8.05 -12.24 -0.10 5.20 16
25 N -0.85 -4.34 8.82 30.57 0.27 -4.07 16
26 O -0.54 -7.10 17.17 5.34 0.09 -7.01 16
27 C -0.06 -0.63 9.58 -39.25 -0.38 -1.00 16
28 C -0.10 -1.02 7.59 -39.24 -0.30 -1.31 16
29 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16
30 H 0.05 0.93 8.00 -51.93 -0.42 0.51 16
31 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16
32 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
33 H 0.04 0.81 8.07 -51.93 -0.42 0.39 16
34 H 0.06 1.30 2.81 -51.93 -0.15 1.15 16
35 H 0.37 9.03 8.32 45.56 0.38 9.41 16
36 H 0.08 0.94 7.86 -51.93 -0.41 0.53 16
37 H 0.08 1.39 7.48 -51.93 -0.39 1.00 16
38 H 0.06 0.52 6.84 -51.93 -0.36 0.16 16
39 H 0.07 0.56 5.95 -51.93 -0.31 0.25 16
40 H 0.07 0.53 7.84 -51.93 -0.41 0.12 16
41 H 0.14 1.33 8.06 -52.48 -0.42 0.91 16
42 H 0.13 0.54 6.39 -52.48 -0.34 0.20 16
43 H 0.40 0.97 6.85 -40.82 -0.28 0.69 16
44 H 0.41 1.56 8.93 -40.82 -0.36 1.19 16
45 H 0.14 1.30 7.64 -52.49 -0.40 0.90 16
46 H 0.14 1.31 5.42 -52.49 -0.28 1.03 16
LS Contribution 374.49 15.07 5.64 5.64
Total: -1.00 -37.86 374.49 -6.45 -44.31
By element:
Atomic # 1 Polarization: 13.43 SS G_CDS: -5.40 Total: 8.02 kcal
Atomic # 6 Polarization: 10.18 SS G_CDS: -1.96 Total: 8.22 kcal
Atomic # 7 Polarization: -54.69 SS G_CDS: 0.07 Total: -54.62 kcal
Atomic # 8 Polarization: -29.11 SS G_CDS: -0.58 Total: -29.69 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -4.22 Total: 18.11 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -37.86 -6.45 -44.31 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734546532.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.806 kcal
(2) G-P(sol) polarization free energy of solvation -37.861 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.666 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal
(6) G-S(sol) free energy of system = (1) + (5) -47.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds