Wall clock time and date at job start Tue Mar 31 2020 18:38:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46499 * 1
3 3 C 1.36935 * 120.00396 * 2 1
4 4 H 1.07999 * 119.99692 * 325.28364 * 3 2 1
5 5 C 1.38806 * 120.00390 * 145.27341 * 3 2 1
6 6 N 1.31618 * 120.00496 * 158.61582 * 5 3 2
7 7 Si 1.86804 * 119.99861 * 338.62210 * 5 3 2
8 8 H 1.48497 * 109.47516 * 95.39178 * 7 5 3
9 9 H 1.48502 * 109.47196 * 215.39314 * 7 5 3
10 10 H 1.48505 * 109.46814 * 335.38860 * 7 5 3
11 11 C 1.46501 * 119.99829 * 180.02562 * 2 1 3
12 12 C 1.52995 * 109.47424 * 89.99706 * 11 2 1
13 13 H 1.08998 * 109.47282 * 305.00306 * 12 11 2
14 14 O 1.42899 * 109.47024 * 64.99726 * 12 11 2
15 15 C 1.52993 * 109.47569 * 184.99912 * 12 11 2
16 16 N 1.46500 * 109.47730 * 180.02562 * 15 12 11
17 17 C 1.46498 * 119.99862 * 270.00411 * 16 15 12
18 18 C 1.34772 * 119.99479 * 89.99824 * 16 15 12
19 19 O 1.21523 * 120.00553 * 355.74424 * 18 16 15
20 20 C 1.48043 * 119.99671 * 175.74138 * 18 16 15
21 21 C 1.39551 * 120.00148 * 220.23882 * 20 18 16
22 22 C 1.37816 * 120.00090 * 179.71745 * 21 20 18
23 23 C 1.39560 * 119.99605 * 0.55671 * 22 21 20
24 24 C 1.48037 * 119.99697 * 179.69717 * 23 22 21
25 25 N 1.34777 * 119.99846 * 0.02562 * 24 23 22
26 26 O 1.21526 * 120.00100 * 180.02562 * 24 23 22
27 27 C 1.39551 * 120.00164 * 359.72212 * 23 22 21
28 28 C 1.37816 * 120.00111 * 359.97438 * 27 23 22
29 29 H 1.09005 * 109.47224 * 265.12894 * 1 2 3
30 30 H 1.09003 * 109.47066 * 25.12762 * 1 2 3
31 31 H 1.08993 * 109.47536 * 145.12652 * 1 2 3
32 32 H 0.96992 * 120.00290 * 180.02562 * 6 5 3
33 33 H 1.09002 * 109.46958 * 329.99768 * 11 2 1
34 34 H 1.08996 * 109.46872 * 209.99803 * 11 2 1
35 35 H 0.96702 * 114.00080 * 60.00415 * 14 12 11
36 36 H 1.09002 * 109.47064 * 59.99810 * 15 12 11
37 37 H 1.08998 * 109.47140 * 300.00481 * 15 12 11
38 38 H 1.09001 * 109.47168 * 94.89799 * 17 16 15
39 39 H 1.09004 * 109.46883 * 214.89684 * 17 16 15
40 40 H 1.08994 * 109.47368 * 334.89215 * 17 16 15
41 41 H 1.08005 * 119.99907 * 0.02562 * 21 20 18
42 42 H 1.08004 * 120.00324 * 180.27948 * 22 21 20
43 43 H 0.96994 * 120.00085 * 359.97438 * 25 24 23
44 44 H 0.97011 * 119.99750 * 179.97438 * 25 24 23
45 45 H 1.07999 * 119.99928 * 179.97438 * 27 23 22
46 46 H 1.08001 * 120.00011 * 179.97438 * 28 27 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1497 1.1858 0.0000
4 1 1.7540 2.0379 -0.5327
5 6 3.3524 1.2929 0.6848
6 7 4.2095 2.2393 0.3656
7 14 3.7545 0.0936 2.0593
8 1 4.5774 -1.0190 1.5207
9 1 4.5114 0.7980 3.1253
10 1 2.4942 -0.4517 2.6249
11 6 2.1975 -1.2688 -0.0006
12 6 2.4524 -1.7099 -1.4432
13 1 1.5061 -1.7541 -1.9822
14 8 3.3208 -0.7717 -2.0817
15 6 3.1059 -3.0932 -1.4457
16 7 3.3506 -3.5154 -2.8270
17 6 2.3262 -4.2680 -3.5553
18 6 4.5181 -3.2112 -3.4277
19 8 5.3361 -2.5212 -2.8519
20 6 4.8040 -3.7178 -4.7891
21 6 6.0832 -4.1744 -5.1093
22 6 6.3479 -4.6514 -6.3749
23 6 5.3396 -4.6669 -7.3397
24 6 5.6256 -5.1731 -8.7011
25 7 6.8596 -5.6193 -9.0087
26 8 4.7478 -5.1862 -9.5414
27 6 4.0619 -4.2049 -7.0211
28 6 3.7956 -3.7338 -5.7537
29 1 -0.3634 -0.0873 1.0240
30 1 -0.3633 0.9304 -0.4364
31 1 -0.3634 -0.8430 -0.5875
32 1 5.0501 2.3139 0.8438
33 1 1.6083 -2.0286 0.5130
34 1 3.1498 -1.1386 0.5133
35 1 4.1836 -0.6805 -1.6546
36 1 2.4435 -3.8088 -0.9586
37 1 4.0522 -3.0490 -0.9066
38 1 1.7212 -3.5802 -4.1459
39 1 2.8066 -4.9891 -4.2166
40 1 1.6888 -4.7948 -2.8452
41 1 6.8646 -4.1586 -4.3638
42 1 7.3367 -5.0090 -6.6215
43 1 7.5604 -5.6084 -8.3382
44 1 7.0470 -5.9513 -9.9008
45 1 3.2817 -4.2166 -7.7679
46 1 2.8068 -3.3758 -5.5073
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001734546532.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:38:48
Heat of formation + Delta-G solvation = -78.443879 kcal
Electronic energy + Delta-G solvation = -29213.132080 eV
Core-core repulsion = 25103.276764 eV
Total energy + Delta-G solvation = -4109.855316 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.67922 -40.76159 -39.24099 -38.54048 -36.86117 -36.04930 -34.94310 -33.68877
-32.62622 -32.12088 -31.10622 -28.41776 -27.94179 -27.36678 -25.44676 -23.79798
-23.37118 -22.56688 -21.90295 -20.76744 -19.24058 -18.97651 -18.39336 -17.95176
-17.58367 -17.37671 -17.08639 -16.28214 -16.24240 -16.04970 -15.87825 -15.70400
-15.50860 -15.34031 -14.94648 -14.79994 -14.52692 -14.45864 -14.18142 -13.91211
-13.74104 -13.64245 -13.49190 -13.25531 -13.05214 -12.66804 -12.57224 -12.33553
-12.14794 -12.02452 -11.94058 -11.43929 -11.33805 -11.13698 -10.94207 -10.76931
-10.60715 -10.12404 -10.06325 -9.62165 -8.72234 -8.12250 -5.47133 -0.57227
0.25754 1.27053 1.39342 1.40175 1.50151 1.92116 1.97024 2.42989
2.44642 2.74538 3.06584 3.35990 3.44351 3.67726 3.73708 3.77906
3.90354 3.97480 4.15863 4.18762 4.24896 4.30876 4.38468 4.47162
4.55104 4.62279 4.68440 4.70729 4.73883 4.85976 4.93209 5.03470
5.06219 5.11724 5.16199 5.19520 5.24756 5.45930 5.65498 5.83677
5.96434 6.18885 6.30909 6.35318 6.87234 7.02907 7.10680 7.22557
7.67803 8.05621 9.08284
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.021547 B = 0.002633 C = 0.002534
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1299.156477 B =10633.598234 C =11048.883100
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.124 3.876
2 N -0.620 5.620
3 C -0.237 4.237
4 H 0.031 0.969
5 C -0.027 4.027
6 N -0.953 5.953
7 Si 0.948 3.052
8 H -0.274 1.274
9 H -0.315 1.315
10 H -0.257 1.257
11 C 0.102 3.898
12 C 0.079 3.921
13 H 0.097 0.903
14 O -0.557 6.557
15 C 0.086 3.914
16 N -0.599 5.599
17 C 0.065 3.935
18 C 0.548 3.452
19 O -0.569 6.569
20 C -0.109 4.109
21 C -0.085 4.085
22 C -0.075 4.075
23 C -0.129 4.129
24 C 0.563 3.437
25 N -0.827 5.827
26 O -0.583 6.583
27 C -0.071 4.071
28 C -0.097 4.097
29 H 0.020 0.980
30 H 0.034 0.966
31 H 0.063 0.937
32 H 0.259 0.741
33 H 0.087 0.913
34 H 0.032 0.968
35 H 0.363 0.637
36 H 0.127 0.873
37 H 0.062 0.938
38 H 0.066 0.934
39 H 0.088 0.912
40 H 0.101 0.899
41 H 0.139 0.861
42 H 0.172 0.828
43 H 0.418 0.582
44 H 0.415 0.585
45 H 0.145 0.855
46 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.830 -24.978 -13.817 28.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.020 4.020
2 N -0.344 5.344
3 C -0.368 4.368
4 H 0.049 0.951
5 C -0.222 4.222
6 N -0.598 5.598
7 Si 0.778 3.222
8 H -0.202 1.202
9 H -0.245 1.245
10 H -0.181 1.181
11 C -0.024 4.024
12 C 0.016 3.984
13 H 0.114 0.886
14 O -0.361 6.361
15 C -0.038 4.038
16 N -0.330 5.330
17 C -0.076 4.076
18 C 0.337 3.663
19 O -0.449 6.449
20 C -0.112 4.112
21 C -0.104 4.104
22 C -0.093 4.093
23 C -0.132 4.132
24 C 0.349 3.651
25 N -0.392 5.392
26 O -0.464 6.464
27 C -0.089 4.089
28 C -0.115 4.115
29 H 0.038 0.962
30 H 0.053 0.947
31 H 0.081 0.919
32 H 0.068 0.932
33 H 0.105 0.895
34 H 0.050 0.950
35 H 0.209 0.791
36 H 0.145 0.855
37 H 0.081 0.919
38 H 0.085 0.915
39 H 0.106 0.894
40 H 0.119 0.881
41 H 0.157 0.843
42 H 0.189 0.811
43 H 0.250 0.750
44 H 0.247 0.753
45 H 0.162 0.838
46 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 1.154 -24.444 -14.270 28.328
hybrid contribution 1.330 0.271 1.132 1.767
sum 2.484 -24.173 -13.137 27.625
Atomic orbital electron populations
1.21180 0.81954 1.00260 0.98626 1.44054 1.02351 1.01285 1.86755
1.18533 1.03581 0.90297 1.24344 0.95139 1.25933 0.96913 0.98921
1.00401 1.70016 1.09007 1.38235 1.42555 0.85817 0.77940 0.78409
0.80040 1.20183 1.24484 1.18083 1.21985 0.96327 0.88389 0.95737
1.22994 0.93379 0.87161 0.94829 0.88563 1.86486 1.28999 1.64186
1.56389 1.22328 1.01927 0.96986 0.82535 1.47686 1.16218 1.54895
1.14190 1.22419 0.90883 0.96010 0.98338 1.18822 0.81690 0.79581
0.86196 1.90776 1.48736 1.38819 1.66525 1.20135 0.96243 1.01503
0.93336 1.21285 0.94991 0.96376 0.97702 1.21494 0.99752 0.96962
0.91098 1.20156 0.95725 1.03482 0.93870 1.18385 0.83040 0.76581
0.87117 1.43596 1.11391 1.65430 1.18774 1.90808 1.47124 1.57395
1.51031 1.21323 0.96541 0.95039 0.96032 1.21674 0.99737 0.97842
0.92241 0.96199 0.94704 0.91891 0.93230 0.89503 0.94980 0.79075
0.85548 0.91908 0.91541 0.89401 0.88092 0.84290 0.81073 0.74974
0.75257 0.83766 0.83078
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 4.65 10.70 127.77 1.37 6.01 16
2 N -0.62 -28.98 2.52 -726.96 -1.83 -30.81 16
3 C -0.24 -13.84 9.44 84.03 0.79 -13.05 16
4 H 0.03 2.03 8.06 -2.91 -0.02 2.00 16
5 C -0.03 -1.59 5.34 84.86 0.45 -1.13 16
6 N -0.95 -61.84 13.97 21.65 0.30 -61.54 16
7 Si 0.95 47.02 24.84 68.60 1.70 48.73 16
8 H -0.27 -12.88 6.69 99.48 0.67 -12.22 16
9 H -0.32 -16.12 7.11 99.48 0.71 -15.41 16
10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16
11 C 0.10 4.00 4.20 86.38 0.36 4.37 16
12 C 0.08 2.80 3.48 30.59 0.11 2.90 16
13 H 0.10 3.18 8.14 -2.39 -0.02 3.17 16
14 O -0.56 -25.99 11.53 -136.43 -1.57 -27.57 16
15 C 0.09 2.34 5.18 86.38 0.45 2.79 16
16 N -0.60 -14.81 2.83 -850.00 -2.40 -17.22 16
17 C 0.06 0.95 8.95 127.77 1.14 2.10 16
18 C 0.55 16.51 6.91 86.85 0.60 17.11 16
19 O -0.57 -22.60 15.05 8.76 0.13 -22.47 16
20 C -0.11 -2.51 5.19 -20.04 -0.10 -2.62 16
21 C -0.08 -1.60 9.62 22.49 0.22 -1.38 16
22 C -0.07 -0.96 9.53 22.49 0.21 -0.75 16
23 C -0.13 -2.10 5.88 -20.04 -0.12 -2.22 16
24 C 0.56 9.44 8.05 86.84 0.70 10.14 16
25 N -0.83 -6.03 8.82 -175.47 -1.55 -7.58 16
26 O -0.58 -14.83 17.17 -3.80 -0.07 -14.89 16
27 C -0.07 -1.28 9.58 22.49 0.22 -1.06 16
28 C -0.10 -1.85 7.59 22.49 0.17 -1.68 16
29 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16
30 H 0.03 1.36 8.00 -2.39 -0.02 1.34 16
31 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16
32 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16
33 H 0.09 2.70 8.07 -2.39 -0.02 2.69 16
34 H 0.03 1.44 2.81 -2.39 -0.01 1.44 16
35 H 0.36 18.45 8.32 -74.06 -0.62 17.83 16
36 H 0.13 2.30 7.86 -2.39 -0.02 2.28 16
37 H 0.06 2.01 7.48 -2.39 -0.02 2.00 16
38 H 0.07 0.94 6.84 -2.39 -0.02 0.92 16
39 H 0.09 1.08 5.95 -2.38 -0.01 1.06 16
40 H 0.10 0.97 7.84 -2.39 -0.02 0.95 16
41 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16
42 H 0.17 0.69 6.39 -2.91 -0.02 0.67 16
43 H 0.42 0.42 6.85 -92.71 -0.64 -0.22 16
44 H 0.41 2.06 8.93 -92.70 -0.83 1.23 16
45 H 0.14 2.53 7.64 -2.91 -0.02 2.51 16
46 H 0.15 2.56 5.42 -2.91 -0.02 2.54 16
Total: -1.00 -88.10 374.49 0.22 -87.88
By element:
Atomic # 1 Polarization: 25.02 SS G_CDS: -1.06 Total: 23.95 kcal
Atomic # 6 Polarization: 14.96 SS G_CDS: 6.57 Total: 21.52 kcal
Atomic # 7 Polarization: -111.67 SS G_CDS: -5.48 Total: -117.15 kcal
Atomic # 8 Polarization: -63.42 SS G_CDS: -1.51 Total: -64.93 kcal
Atomic # 14 Polarization: 47.02 SS G_CDS: 1.70 Total: 48.73 kcal
Total: -88.10 0.22 -87.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001734546532.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 9.432 kcal
(2) G-P(sol) polarization free energy of solvation -88.095 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.444 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds