Wall clock time and date at job start Tue Mar 31 2020 18:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99813 * 2 1 4 4 H 1.07997 * 120.00242 * 166.09718 * 3 2 1 5 5 C 1.38813 * 120.00018 * 345.81965 * 3 2 1 6 6 N 1.31622 * 120.00045 * 343.28088 * 5 3 2 7 7 Si 1.86801 * 120.00060 * 163.28036 * 5 3 2 8 8 H 1.48502 * 109.47160 * 89.99755 * 7 5 3 9 9 H 1.48496 * 109.47281 * 210.00004 * 7 5 3 10 10 H 1.48502 * 109.47172 * 329.99923 * 7 5 3 11 11 C 1.46496 * 120.00366 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47473 * 270.00145 * 11 2 1 13 13 H 1.09003 * 109.47183 * 59.99476 * 12 11 2 14 14 O 1.42905 * 109.46506 * 300.00066 * 12 11 2 15 15 C 1.52991 * 109.47558 * 179.97438 * 12 11 2 16 16 N 1.46498 * 109.47513 * 184.99934 * 15 12 11 17 17 C 1.46497 * 120.00300 * 89.99718 * 16 15 12 18 18 C 1.34780 * 119.99858 * 270.00328 * 16 15 12 19 19 O 1.21528 * 120.00026 * 4.74210 * 18 16 15 20 20 C 1.48031 * 120.00069 * 184.74481 * 18 16 15 21 21 C 1.39558 * 119.99738 * 21.95402 * 20 18 16 22 22 C 1.37820 * 119.99840 * 179.78914 * 21 20 18 23 23 C 1.39562 * 119.99838 * 0.46538 * 22 21 20 24 24 C 1.48036 * 120.00046 * 179.76833 * 23 22 21 25 25 N 1.34776 * 119.99722 * 0.02562 * 24 23 22 26 26 O 1.21527 * 120.00152 * 180.02562 * 24 23 22 27 27 C 1.39553 * 119.99909 * 359.78209 * 23 22 21 28 28 C 1.37819 * 120.00312 * 359.97438 * 27 23 22 29 29 H 1.08993 * 109.47630 * 84.82271 * 1 2 3 30 30 H 1.09007 * 109.46763 * 204.82404 * 1 2 3 31 31 H 1.09009 * 109.47328 * 324.81949 * 1 2 3 32 32 H 0.96994 * 119.99897 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.47144 * 29.99878 * 11 2 1 34 34 H 1.09003 * 109.47344 * 149.99720 * 11 2 1 35 35 H 0.96701 * 113.99827 * 299.99502 * 14 12 11 36 36 H 1.09003 * 109.47230 * 304.99973 * 15 12 11 37 37 H 1.09005 * 109.47194 * 64.99386 * 15 12 11 38 38 H 1.08998 * 109.47127 * 84.47238 * 17 16 15 39 39 H 1.09001 * 109.47250 * 204.48039 * 17 16 15 40 40 H 1.09009 * 109.46953 * 324.47550 * 17 16 15 41 41 H 1.07997 * 120.00304 * 0.02562 * 21 20 18 42 42 H 1.08004 * 120.00361 * 180.20474 * 22 21 20 43 43 H 0.97000 * 120.00770 * 0.02562 * 25 24 23 44 44 H 0.96997 * 119.99962 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.99894 * 179.97438 * 27 23 22 46 46 H 1.07994 * 120.00462 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2059 1.1997 0.2247 5 6 1.4873 2.3697 -0.2945 6 7 0.3118 2.3366 -0.8858 7 14 2.2641 4.0098 0.1483 8 1 3.0980 4.4846 -0.9850 9 1 1.1968 5.0037 0.4280 10 1 3.1152 3.8449 1.3541 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 1.5002 -1.8416 1.9555 14 8 3.2249 -0.7153 2.1157 15 6 3.2171 -3.0363 1.4411 16 7 3.3570 -3.5200 2.8169 17 6 2.3322 -4.3933 3.3941 18 6 4.4286 -3.1614 3.5515 19 8 5.2343 -2.3690 3.1044 20 6 4.6242 -3.7329 4.9030 21 6 4.0093 -4.9376 5.2468 22 6 4.1949 -5.4719 6.5036 23 6 4.9899 -4.8032 7.4357 24 6 5.1852 -5.3745 8.7873 25 7 4.5956 -6.5405 9.1177 26 8 5.8771 -4.7920 9.5991 27 6 5.6006 -3.5959 7.0935 28 6 5.4191 -3.0642 5.8350 29 1 -0.3634 0.0927 -1.0234 30 1 -0.3633 -0.9328 0.4315 31 1 -0.3634 0.8400 0.5921 32 1 -0.1509 3.1638 -1.0919 33 1 1.6085 -2.0282 -0.5147 34 1 3.1500 -1.1381 -0.5144 35 1 4.0873 -0.5466 1.7123 36 1 2.6694 -3.7714 0.8515 37 1 4.2054 -2.8854 1.0067 38 1 2.5347 -5.4266 3.1124 39 1 2.3477 -4.3030 4.4803 40 1 1.3516 -4.0999 3.0191 41 1 3.3911 -5.4532 4.5269 42 1 3.7218 -6.4059 6.7687 43 1 4.0436 -7.0057 8.4697 44 1 4.7232 -6.9147 10.0034 45 1 6.2155 -3.0783 7.8149 46 1 5.8913 -2.1297 5.5703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734546533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:53 Heat of formation + Delta-G solvation = -37.002852 kcal Electronic energy + Delta-G solvation = -28767.254422 eV Core-core repulsion = 24659.196124 eV Total energy + Delta-G solvation = -4108.058298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.91553 -39.92106 -38.19670 -37.12024 -35.61364 -34.53142 -34.33302 -31.99268 -31.31848 -31.23248 -29.40740 -27.35559 -26.28470 -25.75250 -24.43121 -23.01740 -22.14760 -21.14214 -20.40944 -19.96711 -18.55716 -17.60860 -17.18281 -16.89504 -16.36783 -16.06304 -15.45959 -15.29118 -15.13772 -14.98163 -14.72165 -14.57021 -14.37686 -14.20042 -13.74345 -13.61462 -13.27567 -13.17642 -12.87416 -12.72522 -12.68311 -12.17317 -11.82981 -11.58902 -11.23629 -11.02102 -10.77991 -10.64645 -10.56892 -10.51557 -10.30057 -10.21356 -9.97298 -9.90187 -9.80942 -9.57579 -9.42083 -9.31321 -8.59813 -8.33331 -6.72478 -5.63106 -2.99497 0.13112 0.92164 2.18437 2.78823 2.97036 2.99460 3.46700 3.53397 3.55314 3.59167 4.13824 4.26594 4.39198 4.49618 4.59615 4.79187 4.92660 4.95909 5.00249 5.06576 5.19996 5.27485 5.39623 5.48325 5.52633 5.54110 5.66961 5.72393 5.86130 5.87853 5.94011 5.97327 6.05727 6.26196 6.35979 6.43922 6.52205 6.70600 6.78760 6.80944 7.27451 7.48035 7.74307 7.75375 7.92202 8.11285 8.41878 8.52818 9.32529 9.96182 10.40773 11.43352 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.002354 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.478883 B =11892.900225 C =12619.857925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.165 3.835 2 N -0.595 5.595 3 C -0.231 4.231 4 H 0.071 0.929 5 C -0.009 4.009 6 N -0.916 5.916 7 Si 0.902 3.098 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.125 3.875 12 C 0.071 3.929 13 H 0.084 0.916 14 O -0.537 6.537 15 C 0.082 3.918 16 N -0.602 5.602 17 C 0.059 3.941 18 C 0.556 3.444 19 O -0.518 6.518 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.097 4.097 23 C -0.123 4.123 24 C 0.563 3.437 25 N -0.851 5.851 26 O -0.536 6.536 27 C -0.066 4.066 28 C -0.067 4.067 29 H 0.025 0.975 30 H -0.008 1.008 31 H 0.051 0.949 32 H 0.250 0.750 33 H 0.042 0.958 34 H 0.050 0.950 35 H 0.368 0.632 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.158 0.842 42 H 0.131 0.869 43 H 0.401 0.599 44 H 0.406 0.594 45 H 0.143 0.857 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.628 -23.982 14.323 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.317 5.317 3 C -0.360 4.360 4 H 0.088 0.912 5 C -0.206 4.206 6 N -0.563 5.563 7 Si 0.733 3.267 8 H -0.218 1.218 9 H -0.218 1.218 10 H -0.205 1.205 11 C -0.004 4.004 12 C 0.007 3.993 13 H 0.102 0.898 14 O -0.341 6.341 15 C -0.041 4.041 16 N -0.334 5.334 17 C -0.083 4.083 18 C 0.344 3.656 19 O -0.395 6.395 20 C -0.100 4.100 21 C -0.138 4.138 22 C -0.116 4.116 23 C -0.127 4.127 24 C 0.349 3.651 25 N -0.415 5.415 26 O -0.413 6.413 27 C -0.085 4.085 28 C -0.086 4.086 29 H 0.043 0.957 30 H 0.010 0.990 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.214 0.786 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.175 0.825 42 H 0.149 0.851 43 H 0.231 0.769 44 H 0.237 0.763 45 H 0.161 0.839 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.869 -22.871 14.785 27.666 hybrid contribution 0.314 0.353 -0.095 0.482 sum 5.183 -22.518 14.690 27.381 Atomic orbital electron populations 1.20829 0.82381 0.95455 0.99249 1.43805 1.01864 1.00474 1.85552 1.19167 0.93754 0.83971 1.39140 0.91164 1.24819 0.97505 0.97998 1.00233 1.70130 1.16045 1.25757 1.44376 0.86278 0.78087 0.84013 0.78370 1.21776 1.21806 1.20533 1.21315 0.96760 0.89389 0.92962 1.23145 0.93722 0.85332 0.97103 0.89839 1.86575 1.32653 1.59115 1.55723 1.22461 1.02701 0.97872 0.81059 1.47595 1.21886 1.49483 1.14474 1.22495 0.92240 0.93333 1.00248 1.18223 0.81527 0.81227 0.84632 1.90767 1.44307 1.32845 1.71534 1.20244 0.98950 0.96100 0.94745 1.22217 0.98693 0.95528 0.97383 1.21215 0.97680 0.99323 0.93396 1.20049 1.01382 0.97318 0.93910 1.18352 0.78870 0.80670 0.87217 1.43751 1.53775 1.24646 1.19316 1.90831 1.38735 1.60410 1.51363 1.21283 0.97176 0.93795 0.96258 1.21338 0.95526 0.99988 0.91731 0.95669 0.98982 0.93006 0.94024 0.93934 0.93185 0.78552 0.89942 0.89668 0.92046 0.89374 0.90823 0.82523 0.85127 0.76888 0.76313 0.83928 0.83783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.13 8.98 59.85 0.54 4.67 16 2 N -0.60 -14.97 2.88 -181.12 -0.52 -15.49 16 3 C -0.23 -6.45 9.08 -15.06 -0.14 -6.59 16 4 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 5 C -0.01 -0.27 5.06 -17.43 -0.09 -0.36 16 6 N -0.92 -27.35 10.43 55.49 0.58 -26.77 16 7 Si 0.90 22.87 29.59 -169.99 -5.03 17.84 16 8 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 9 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.12 2.43 5.36 -4.04 -0.02 2.40 16 12 C 0.07 1.21 3.48 -26.74 -0.09 1.12 16 13 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 14 O -0.54 -10.95 11.28 -47.95 -0.54 -11.50 16 15 C 0.08 1.06 5.13 -4.05 -0.02 1.03 16 16 N -0.60 -7.10 2.86 -182.63 -0.52 -7.62 16 17 C 0.06 0.45 8.67 59.85 0.52 0.97 16 18 C 0.56 7.65 7.21 -12.24 -0.09 7.56 16 19 O -0.52 -8.95 14.84 -7.38 -0.11 -9.06 16 20 C -0.10 -1.07 5.57 -104.90 -0.58 -1.65 16 21 C -0.12 -0.90 7.54 -39.24 -0.30 -1.19 16 22 C -0.10 -0.60 9.53 -39.24 -0.37 -0.97 16 23 C -0.12 -1.06 5.88 -104.90 -0.62 -1.68 16 24 C 0.56 5.03 8.05 -12.24 -0.10 4.93 16 25 N -0.85 -3.73 8.82 30.57 0.27 -3.46 16 26 O -0.54 -7.01 17.17 5.34 0.09 -6.92 16 27 C -0.07 -0.67 9.58 -39.24 -0.38 -1.04 16 28 C -0.07 -0.75 9.57 -39.24 -0.38 -1.12 16 29 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 30 H -0.01 -0.18 8.03 -51.93 -0.42 -0.60 16 31 H 0.05 1.43 6.83 -51.92 -0.35 1.07 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 34 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.37 7.16 8.63 45.56 0.39 7.56 16 36 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 37 H 0.08 1.17 7.49 -51.93 -0.39 0.78 16 38 H 0.06 0.29 7.19 -51.93 -0.37 -0.08 16 39 H 0.09 0.60 4.95 -51.93 -0.26 0.34 16 40 H 0.07 0.55 8.11 -51.92 -0.42 0.13 16 41 H 0.16 0.80 4.13 -52.49 -0.22 0.58 16 42 H 0.13 0.29 6.39 -52.48 -0.34 -0.04 16 43 H 0.40 0.56 6.85 -40.82 -0.28 0.28 16 44 H 0.41 1.32 8.93 -40.82 -0.36 0.95 16 45 H 0.14 1.40 7.64 -52.48 -0.40 1.00 16 46 H 0.14 1.67 7.80 -52.49 -0.41 1.27 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -37.86 376.88 -7.66 -45.52 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.44 Total: 3.69 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.11 Total: 8.08 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.20 Total: -53.34 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: -0.56 Total: -27.47 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.84 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.86 -7.66 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734546533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.514 kcal (2) G-P(sol) polarization free energy of solvation -37.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds