Wall clock time and date at job start Tue Mar 31 2020 18:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99813 * 2 1 4 4 H 1.07997 * 120.00242 * 166.09718 * 3 2 1 5 5 C 1.38813 * 120.00018 * 345.81965 * 3 2 1 6 6 N 1.31622 * 120.00045 * 343.28088 * 5 3 2 7 7 Si 1.86801 * 120.00060 * 163.28036 * 5 3 2 8 8 H 1.48502 * 109.47160 * 89.99755 * 7 5 3 9 9 H 1.48496 * 109.47281 * 210.00004 * 7 5 3 10 10 H 1.48502 * 109.47172 * 329.99923 * 7 5 3 11 11 C 1.46496 * 120.00366 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47473 * 270.00145 * 11 2 1 13 13 H 1.09003 * 109.47183 * 59.99476 * 12 11 2 14 14 O 1.42905 * 109.46506 * 300.00066 * 12 11 2 15 15 C 1.52991 * 109.47558 * 179.97438 * 12 11 2 16 16 N 1.46498 * 109.47513 * 184.99934 * 15 12 11 17 17 C 1.46497 * 120.00300 * 89.99718 * 16 15 12 18 18 C 1.34780 * 119.99858 * 270.00328 * 16 15 12 19 19 O 1.21528 * 120.00026 * 4.74210 * 18 16 15 20 20 C 1.48031 * 120.00069 * 184.74481 * 18 16 15 21 21 C 1.39558 * 119.99738 * 21.95402 * 20 18 16 22 22 C 1.37820 * 119.99840 * 179.78914 * 21 20 18 23 23 C 1.39562 * 119.99838 * 0.46538 * 22 21 20 24 24 C 1.48036 * 120.00046 * 179.76833 * 23 22 21 25 25 N 1.34776 * 119.99722 * 0.02562 * 24 23 22 26 26 O 1.21527 * 120.00152 * 180.02562 * 24 23 22 27 27 C 1.39553 * 119.99909 * 359.78209 * 23 22 21 28 28 C 1.37819 * 120.00312 * 359.97438 * 27 23 22 29 29 H 1.08993 * 109.47630 * 84.82271 * 1 2 3 30 30 H 1.09007 * 109.46763 * 204.82404 * 1 2 3 31 31 H 1.09009 * 109.47328 * 324.81949 * 1 2 3 32 32 H 0.96994 * 119.99897 * 180.02562 * 6 5 3 33 33 H 1.09006 * 109.47144 * 29.99878 * 11 2 1 34 34 H 1.09003 * 109.47344 * 149.99720 * 11 2 1 35 35 H 0.96701 * 113.99827 * 299.99502 * 14 12 11 36 36 H 1.09003 * 109.47230 * 304.99973 * 15 12 11 37 37 H 1.09005 * 109.47194 * 64.99386 * 15 12 11 38 38 H 1.08998 * 109.47127 * 84.47238 * 17 16 15 39 39 H 1.09001 * 109.47250 * 204.48039 * 17 16 15 40 40 H 1.09009 * 109.46953 * 324.47550 * 17 16 15 41 41 H 1.07997 * 120.00304 * 0.02562 * 21 20 18 42 42 H 1.08004 * 120.00361 * 180.20474 * 22 21 20 43 43 H 0.97000 * 120.00770 * 0.02562 * 25 24 23 44 44 H 0.96997 * 119.99962 * 180.02562 * 25 24 23 45 45 H 1.08004 * 119.99894 * 179.97438 * 27 23 22 46 46 H 1.07994 * 120.00462 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.2059 1.1997 0.2247 5 6 1.4873 2.3697 -0.2945 6 7 0.3118 2.3366 -0.8858 7 14 2.2641 4.0098 0.1483 8 1 3.0980 4.4846 -0.9850 9 1 1.1968 5.0037 0.4280 10 1 3.1152 3.8449 1.3541 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7110 1.4417 13 1 1.5002 -1.8416 1.9555 14 8 3.2249 -0.7153 2.1157 15 6 3.2171 -3.0363 1.4411 16 7 3.3570 -3.5200 2.8169 17 6 2.3322 -4.3933 3.3941 18 6 4.4286 -3.1614 3.5515 19 8 5.2343 -2.3690 3.1044 20 6 4.6242 -3.7329 4.9030 21 6 4.0093 -4.9376 5.2468 22 6 4.1949 -5.4719 6.5036 23 6 4.9899 -4.8032 7.4357 24 6 5.1852 -5.3745 8.7873 25 7 4.5956 -6.5405 9.1177 26 8 5.8771 -4.7920 9.5991 27 6 5.6006 -3.5959 7.0935 28 6 5.4191 -3.0642 5.8350 29 1 -0.3634 0.0927 -1.0234 30 1 -0.3633 -0.9328 0.4315 31 1 -0.3634 0.8400 0.5921 32 1 -0.1509 3.1638 -1.0919 33 1 1.6085 -2.0282 -0.5147 34 1 3.1500 -1.1381 -0.5144 35 1 4.0873 -0.5466 1.7123 36 1 2.6694 -3.7714 0.8515 37 1 4.2054 -2.8854 1.0067 38 1 2.5347 -5.4266 3.1124 39 1 2.3477 -4.3030 4.4803 40 1 1.3516 -4.0999 3.0191 41 1 3.3911 -5.4532 4.5269 42 1 3.7218 -6.4059 6.7687 43 1 4.0436 -7.0057 8.4697 44 1 4.7232 -6.9147 10.0034 45 1 6.2155 -3.0783 7.8149 46 1 5.8913 -2.1297 5.5703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734546533.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:52 Heat of formation + Delta-G solvation = -67.339683 kcal Electronic energy + Delta-G solvation = -28768.569926 eV Core-core repulsion = 24659.196124 eV Total energy + Delta-G solvation = -4109.373802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.71681 -40.73826 -39.15929 -38.44872 -36.86716 -36.16029 -34.94830 -33.32454 -32.71350 -31.98712 -30.75256 -28.23900 -27.93867 -27.34613 -25.45425 -23.86086 -23.45890 -22.13966 -21.83752 -20.84314 -19.15460 -18.85130 -18.37553 -17.87749 -17.62885 -17.08620 -16.76688 -16.43229 -16.21175 -16.01348 -15.88001 -15.58575 -15.42698 -15.14319 -15.03170 -14.89072 -14.60179 -14.44984 -13.94061 -13.70904 -13.59440 -13.48201 -13.12720 -12.85686 -12.77518 -12.59847 -12.49785 -12.21497 -12.00044 -11.90312 -11.88830 -11.82052 -11.33512 -11.11161 -10.90362 -10.76421 -10.54581 -10.12992 -10.01116 -9.56882 -8.73777 -7.79557 -5.16203 -0.60282 0.26831 1.40672 1.43137 1.45785 1.55978 1.89840 2.14901 2.44738 2.53410 2.81349 3.32595 3.40571 3.59953 3.69680 3.81368 3.83373 3.92747 4.09571 4.16234 4.25832 4.27602 4.34810 4.51164 4.56309 4.61333 4.65496 4.78536 4.83267 4.88380 4.94641 4.96509 5.07226 5.19141 5.20995 5.29959 5.42429 5.52230 5.63507 5.68279 5.76886 5.84633 6.33715 6.37072 6.38670 6.98481 7.15158 7.20457 7.24760 7.93262 8.31235 9.24755 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019597 B = 0.002354 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.478883 B =11892.900225 C =12619.857925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.614 5.614 3 C -0.229 4.229 4 H 0.068 0.932 5 C -0.067 4.067 6 N -0.944 5.944 7 Si 0.959 3.041 8 H -0.285 1.285 9 H -0.295 1.295 10 H -0.281 1.281 11 C 0.121 3.879 12 C 0.079 3.921 13 H 0.079 0.921 14 O -0.563 6.563 15 C 0.093 3.907 16 N -0.600 5.600 17 C 0.047 3.953 18 C 0.546 3.454 19 O -0.569 6.569 20 C -0.115 4.115 21 C -0.106 4.106 22 C -0.076 4.076 23 C -0.127 4.127 24 C 0.561 3.439 25 N -0.823 5.823 26 O -0.588 6.588 27 C -0.080 4.080 28 C -0.086 4.086 29 H 0.002 0.998 30 H 0.032 0.968 31 H 0.016 0.984 32 H 0.244 0.756 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.367 0.633 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.191 0.809 42 H 0.183 0.817 43 H 0.420 0.580 44 H 0.415 0.585 45 H 0.131 0.869 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 -28.159 15.025 32.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.337 5.337 3 C -0.359 4.359 4 H 0.086 0.914 5 C -0.260 4.260 6 N -0.593 5.593 7 Si 0.789 3.211 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.207 1.207 11 C -0.006 4.006 12 C 0.016 3.984 13 H 0.097 0.903 14 O -0.367 6.367 15 C -0.031 4.031 16 N -0.331 5.331 17 C -0.094 4.094 18 C 0.335 3.665 19 O -0.449 6.449 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.094 4.094 23 C -0.130 4.130 24 C 0.346 3.654 25 N -0.388 5.388 26 O -0.469 6.469 27 C -0.099 4.099 28 C -0.105 4.105 29 H 0.020 0.980 30 H 0.050 0.950 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.214 0.786 36 H 0.140 0.860 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.098 0.902 41 H 0.208 0.792 42 H 0.200 0.800 43 H 0.253 0.747 44 H 0.247 0.753 45 H 0.149 0.851 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 3.677 -27.159 15.495 31.484 hybrid contribution 0.649 1.490 -0.274 1.648 sum 4.326 -25.668 15.222 30.154 Atomic orbital electron populations 1.20556 0.82571 0.95980 0.97488 1.44054 1.02175 1.01689 1.85748 1.19423 0.93828 0.85364 1.37308 0.91404 1.25500 0.98402 1.00848 1.01274 1.70270 1.17229 1.25842 1.45994 0.85373 0.77099 0.80684 0.77942 1.21223 1.22144 1.20660 1.21566 0.96469 0.87756 0.94809 1.23006 0.93844 0.86837 0.94683 0.90306 1.86541 1.32897 1.60699 1.56611 1.22224 1.01880 0.96462 0.82484 1.47683 1.22141 1.49386 1.13884 1.22886 0.91158 0.94585 1.00754 1.18750 0.81482 0.80675 0.85547 1.90735 1.46248 1.35206 1.72740 1.20170 1.00490 0.97879 0.93330 1.22568 0.97594 0.93751 0.98413 1.21708 0.95647 1.00215 0.91825 1.20186 1.01509 0.96793 0.94528 1.18441 0.78648 0.81463 0.86804 1.43541 1.52243 1.22858 1.20173 1.90816 1.41279 1.62147 1.52684 1.21214 0.98039 0.95025 0.95650 1.21191 0.96757 0.99909 0.92692 0.97991 0.94964 0.96467 0.94656 0.90953 0.93451 0.78595 0.85968 0.90829 0.87904 0.88518 0.90236 0.79203 0.79959 0.74688 0.75285 0.85059 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.90 8.98 127.77 1.15 10.05 16 2 N -0.61 -30.73 2.88 -726.93 -2.09 -32.82 16 3 C -0.23 -12.92 9.08 84.03 0.76 -12.15 16 4 H 0.07 3.79 7.81 -2.91 -0.02 3.76 16 5 C -0.07 -3.94 5.06 84.86 0.43 -3.51 16 6 N -0.94 -57.63 10.43 21.65 0.23 -57.41 16 7 Si 0.96 48.15 29.59 68.60 2.03 50.18 16 8 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 9 H -0.29 -14.82 7.11 99.48 0.71 -14.11 16 10 H -0.28 -13.98 7.11 99.48 0.71 -13.27 16 11 C 0.12 4.51 5.36 86.38 0.46 4.98 16 12 C 0.08 2.58 3.48 30.59 0.11 2.69 16 13 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 14 O -0.56 -23.25 11.28 -136.82 -1.54 -24.79 16 15 C 0.09 2.16 5.13 86.38 0.44 2.60 16 16 N -0.60 -12.56 2.86 -849.99 -2.43 -14.98 16 17 C 0.05 0.48 8.67 127.77 1.11 1.58 16 18 C 0.55 14.73 7.21 86.84 0.63 15.36 16 19 O -0.57 -20.48 14.84 8.36 0.12 -20.36 16 20 C -0.12 -2.42 5.57 -20.04 -0.11 -2.53 16 21 C -0.11 -1.14 7.54 22.49 0.17 -0.97 16 22 C -0.08 -0.58 9.53 22.49 0.21 -0.37 16 23 C -0.13 -1.94 5.88 -20.04 -0.12 -2.05 16 24 C 0.56 8.98 8.05 86.84 0.70 9.68 16 25 N -0.82 -4.23 8.82 -175.48 -1.55 -5.78 16 26 O -0.59 -15.38 17.17 -3.80 -0.07 -15.44 16 27 C -0.08 -1.67 9.58 22.49 0.22 -1.46 16 28 C -0.09 -2.04 9.57 22.49 0.22 -1.82 16 29 H 0.00 0.10 7.57 -2.39 -0.02 0.08 16 30 H 0.03 1.31 8.03 -2.38 -0.02 1.29 16 31 H 0.02 0.94 6.83 -2.38 -0.02 0.92 16 32 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.07 2.28 8.07 -2.38 -0.02 2.26 16 34 H 0.05 1.79 8.04 -2.39 -0.02 1.77 16 35 H 0.37 14.88 8.63 -74.06 -0.64 14.24 16 36 H 0.12 1.89 8.07 -2.39 -0.02 1.87 16 37 H 0.07 1.93 7.49 -2.38 -0.02 1.91 16 38 H 0.10 0.27 7.19 -2.39 -0.02 0.25 16 39 H 0.10 0.85 4.95 -2.39 -0.01 0.83 16 40 H 0.08 0.79 8.11 -2.38 -0.02 0.77 16 41 H 0.19 0.74 4.13 -2.91 -0.01 0.73 16 42 H 0.18 -0.52 6.39 -2.91 -0.02 -0.54 16 43 H 0.42 -1.08 6.85 -92.71 -0.64 -1.72 16 44 H 0.41 1.36 8.93 -92.71 -0.83 0.53 16 45 H 0.13 2.91 7.64 -2.91 -0.02 2.89 16 46 H 0.12 3.26 7.80 -2.91 -0.02 3.24 16 Total: -1.00 -88.49 376.88 0.02 -88.46 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -1.05 Total: 10.88 kcal Atomic # 6 Polarization: 15.69 SS G_CDS: 6.37 Total: 22.06 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.84 Total: -110.99 kcal Atomic # 8 Polarization: -59.11 SS G_CDS: -1.48 Total: -60.60 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.18 kcal Total: -88.49 0.02 -88.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734546533.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.122 kcal (2) G-P(sol) polarization free energy of solvation -88.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds