Wall clock time and date at job start Tue Mar 31 2020 18:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 119.99761 * 2 1 4 4 H 1.08005 * 120.00218 * 203.73859 * 3 2 1 5 5 C 1.38819 * 119.99771 * 23.74237 * 3 2 1 6 6 N 1.31611 * 120.00336 * 11.70334 * 5 3 2 7 7 Si 1.86804 * 119.99545 * 191.70148 * 5 3 2 8 8 H 1.48504 * 109.47025 * 90.00425 * 7 5 3 9 9 H 1.48502 * 109.46925 * 209.99984 * 7 5 3 10 10 H 1.48496 * 109.47354 * 329.99998 * 7 5 3 11 11 C 1.46495 * 120.00201 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46854 * 90.00492 * 11 2 1 13 13 H 1.08995 * 109.50182 * 55.06187 * 12 11 2 14 14 C 1.53045 * 109.49828 * 175.16180 * 12 11 2 15 15 C 1.53038 * 109.53917 * 181.31330 * 14 12 11 16 16 C 1.53623 * 109.24024 * 298.50952 * 15 14 12 17 17 N 1.46922 * 108.54471 * 54.86013 * 16 15 14 18 18 C 1.34777 * 120.63397 * 126.36423 * 17 16 15 19 19 O 1.21613 * 120.00142 * 187.20245 * 18 17 16 20 20 C 1.47285 * 119.99803 * 7.20198 * 18 17 16 21 21 C 1.36572 * 125.80684 * 187.26058 * 20 18 17 22 22 C 1.40060 * 106.92644 * 179.97438 * 21 20 18 23 23 C 1.36560 * 106.92797 * 359.97438 * 22 21 20 24 24 C 1.47294 * 125.80507 * 179.97438 * 23 22 21 25 25 N 1.34782 * 119.99908 * 180.02562 * 24 23 22 26 26 O 1.21613 * 119.99944 * 0.02983 * 24 23 22 27 27 O 1.34545 * 108.39031 * 0.02562 * 23 22 21 28 28 C 1.46929 * 118.73506 * 306.09028 * 17 16 15 29 29 H 1.08996 * 109.47435 * 276.34984 * 1 2 3 30 30 H 1.09000 * 109.47728 * 36.35752 * 1 2 3 31 31 H 1.09002 * 109.46631 * 156.35704 * 1 2 3 32 32 H 0.97001 * 120.00639 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47583 * 330.00469 * 11 2 1 34 34 H 1.09004 * 109.47367 * 209.99663 * 11 2 1 35 35 H 1.09004 * 109.45705 * 301.33648 * 14 12 11 36 36 H 1.09005 * 109.45870 * 61.30305 * 14 12 11 37 37 H 1.08997 * 109.49633 * 58.59086 * 15 14 12 38 38 H 1.09006 * 109.49740 * 178.65298 * 15 14 12 39 39 H 1.08995 * 109.74195 * 295.11721 * 16 15 14 40 40 H 1.09006 * 109.65980 * 174.54532 * 16 15 14 41 41 H 1.07998 * 126.53384 * 359.71301 * 21 20 18 42 42 H 1.08006 * 126.53380 * 179.97438 * 22 21 20 43 43 H 0.97003 * 120.00060 * 0.02562 * 25 24 23 44 44 H 0.97001 * 119.99723 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.58351 * 173.64675 * 28 17 16 46 46 H 1.09000 * 109.58694 * 293.92996 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1611 1.2256 -0.3765 5 6 1.5435 2.3372 0.4840 6 7 0.4112 2.2548 1.1498 7 14 2.3352 4.0035 0.1904 8 1 1.8314 4.5731 -1.0851 9 1 1.9939 4.9178 1.3097 10 1 3.8096 3.8444 0.1133 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 2.9653 -0.9145 -1.9812 14 6 3.3208 -2.9712 -1.4437 15 6 3.6038 -3.3956 -2.8866 16 6 2.2765 -3.7222 -3.5878 17 7 1.3848 -2.5610 -3.4646 18 6 0.8192 -2.0105 -4.5571 19 8 0.1903 -0.9742 -4.4596 20 6 0.9628 -2.6641 -5.8692 21 6 0.5634 -2.1458 -7.0680 22 6 0.8884 -3.0908 -8.0493 23 6 1.4728 -4.1453 -7.4079 24 6 1.9753 -5.3726 -8.0488 25 7 2.5335 -6.3440 -7.2996 26 8 1.8867 -5.5093 -9.2540 27 8 1.5106 -3.8729 -6.0909 28 6 1.1167 -2.0150 -2.1272 29 1 -0.3634 0.1137 1.0213 30 1 -0.3634 0.8276 -0.6092 31 1 -0.3633 -0.9415 -0.4122 32 1 -0.0121 3.0592 1.4884 33 1 1.6085 -2.0281 0.5146 34 1 3.1500 -1.1381 0.5143 35 1 4.2622 -2.7643 -0.9347 36 1 2.7965 -3.7741 -0.9254 37 1 4.1060 -2.5838 -3.4127 38 1 4.2419 -4.2793 -2.8874 39 1 1.8145 -4.5893 -3.1159 40 1 2.4603 -3.9316 -4.6416 41 1 0.0841 -1.1914 -7.2281 42 1 0.7107 -3.0024 -9.1110 43 1 2.6039 -6.2351 -6.3383 44 1 2.8641 -7.1525 -7.7216 45 1 0.5350 -1.0976 -2.2170 46 1 0.5598 -2.7447 -1.5395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752514131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:28 Heat of formation + Delta-G solvation = -25.270477 kcal Electronic energy + Delta-G solvation = -29590.389804 eV Core-core repulsion = 25482.840259 eV Total energy + Delta-G solvation = -4107.549544 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.21844 -40.07390 -39.54940 -37.71643 -35.59025 -34.39101 -33.59139 -32.98947 -31.78138 -30.69423 -29.90437 -26.70144 -25.82822 -25.53005 -24.16291 -22.70085 -22.26215 -21.31303 -20.83048 -20.21576 -19.57032 -18.61207 -17.58135 -17.28566 -17.00775 -16.58425 -16.12280 -15.23498 -15.13857 -14.95979 -14.78533 -14.49681 -14.35070 -13.84885 -13.59255 -13.54625 -13.50814 -13.40069 -13.05872 -12.92572 -12.49115 -12.42830 -11.63288 -11.29811 -11.03022 -11.01309 -10.92037 -10.82677 -10.66209 -10.51729 -10.43218 -10.32099 -10.27721 -10.13236 -9.97823 -9.85419 -9.78640 -9.15572 -8.61016 -8.47353 -6.68235 -5.66378 -3.15061 0.31034 1.61663 1.96812 2.69213 2.80137 2.98230 3.10080 3.42313 3.48652 3.49017 4.11536 4.43907 4.52314 4.54190 4.75476 4.87580 4.99876 5.12900 5.15649 5.25736 5.33502 5.45299 5.50267 5.62248 5.66002 5.71125 5.82595 5.86935 5.99526 6.02646 6.08361 6.11834 6.20209 6.28808 6.32050 6.48024 6.61981 6.73603 6.75521 6.80085 6.93591 7.29796 7.43834 7.58374 7.79267 7.85884 7.96715 8.45503 9.28966 9.92242 10.40739 11.37454 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.002808 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.513144 B = 9968.317939 C =10692.142204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.253 4.253 4 H 0.066 0.934 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.159 3.841 12 C -0.123 4.123 13 H 0.075 0.925 14 C -0.115 4.115 15 C -0.132 4.132 16 C 0.096 3.904 17 N -0.598 5.598 18 C 0.591 3.409 19 O -0.501 6.501 20 C -0.024 4.024 21 C -0.139 4.139 22 C -0.121 4.121 23 C -0.071 4.071 24 C 0.611 3.389 25 N -0.842 5.842 26 O -0.519 6.519 27 O -0.148 6.148 28 C 0.122 3.878 29 H 0.032 0.968 30 H 0.039 0.961 31 H -0.001 1.001 32 H 0.252 0.748 33 H 0.036 0.964 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.171 0.829 42 H 0.168 0.832 43 H 0.408 0.592 44 H 0.411 0.589 45 H 0.108 0.892 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -19.338 -13.635 24.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.324 5.324 3 C -0.383 4.383 4 H 0.084 0.916 5 C -0.195 4.195 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.206 1.206 11 C 0.031 3.969 12 C -0.145 4.145 13 H 0.093 0.907 14 C -0.153 4.153 15 C -0.170 4.170 16 C -0.027 4.027 17 N -0.330 5.330 18 C 0.377 3.623 19 O -0.377 6.377 20 C -0.078 4.078 21 C -0.160 4.160 22 C -0.142 4.142 23 C -0.125 4.125 24 C 0.396 3.604 25 N -0.405 5.405 26 O -0.396 6.396 27 O -0.045 6.045 28 C 0.001 3.999 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.188 0.812 42 H 0.186 0.814 43 H 0.237 0.763 44 H 0.243 0.757 45 H 0.126 0.874 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.982 -18.751 -14.003 23.739 hybrid contribution 0.546 0.733 0.038 0.914 sum 4.528 -18.018 -13.965 23.241 Atomic orbital electron populations 1.20876 0.82693 0.95249 0.99636 1.43874 1.01773 1.00626 1.86085 1.19136 0.98572 0.85829 1.34721 0.91626 1.25029 0.97816 0.98515 0.98167 1.70048 1.19132 1.27213 1.38869 0.86281 0.78749 0.84318 0.77341 1.21478 1.21795 1.20565 1.20708 0.96396 0.88483 0.91314 1.22301 0.94559 0.96559 1.01087 0.90695 1.21569 1.00383 0.98087 0.95242 1.21987 0.96082 1.01688 0.97289 1.22243 0.90537 0.87882 1.02003 1.48161 1.46023 1.31521 1.07266 1.16853 0.80521 0.83912 0.81039 1.90942 1.41874 1.21326 1.83588 1.22731 1.02993 0.85168 0.96868 1.22026 1.02102 1.01833 0.90003 1.21988 0.98750 0.91850 1.01573 1.22357 1.09289 0.98829 0.81977 1.16624 0.77105 0.80901 0.85801 1.43688 1.63341 1.21265 1.12230 1.90926 1.56981 1.78669 1.13002 1.84247 1.62440 1.33017 1.24817 1.21982 0.98465 1.00185 0.79236 0.94947 0.94237 0.98264 0.93809 0.94544 0.93042 0.91574 0.92058 0.91529 0.90978 0.91042 0.88741 0.81196 0.81445 0.76284 0.75717 0.87421 0.91780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.94 7.91 59.85 0.47 4.41 16 2 N -0.60 -14.82 2.76 -181.12 -0.50 -15.32 16 3 C -0.25 -6.95 9.65 -15.06 -0.15 -7.10 16 4 H 0.07 1.77 7.86 -52.48 -0.41 1.36 16 5 C 0.00 0.08 5.14 -17.43 -0.09 -0.01 16 6 N -0.91 -26.80 10.67 55.49 0.59 -26.21 16 7 Si 0.90 22.30 29.57 -169.99 -5.03 17.27 16 8 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 9 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 C 0.16 3.08 5.13 -4.04 -0.02 3.06 16 12 C -0.12 -1.99 2.55 -90.50 -0.23 -2.22 16 13 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 14 C -0.11 -1.36 5.16 -26.69 -0.14 -1.50 16 15 C -0.13 -1.29 6.10 -26.39 -0.16 -1.45 16 16 C 0.10 0.95 6.14 -3.49 -0.02 0.93 16 17 N -0.60 -8.34 2.97 -173.82 -0.52 -8.86 16 18 C 0.59 9.12 7.67 -12.58 -0.10 9.02 16 19 O -0.50 -9.73 16.30 5.27 0.09 -9.64 16 20 C -0.02 -0.29 6.78 -36.51 -0.25 -0.54 16 21 C -0.14 -1.56 10.60 -39.50 -0.42 -1.98 16 22 C -0.12 -1.21 10.60 -39.50 -0.42 -1.62 16 23 C -0.07 -0.70 7.14 -36.51 -0.26 -0.96 16 24 C 0.61 5.55 8.08 -12.58 -0.10 5.45 16 25 N -0.84 -4.15 8.87 30.40 0.27 -3.88 16 26 O -0.52 -6.39 17.70 5.27 0.09 -6.29 16 27 O -0.15 -1.46 6.99 4.36 0.03 -1.43 16 28 C 0.12 1.97 4.46 -3.71 -0.02 1.96 16 29 H 0.03 0.87 7.25 -51.93 -0.38 0.49 16 30 H 0.04 1.07 7.44 -51.93 -0.39 0.68 16 31 H 0.00 -0.02 6.33 -51.93 -0.33 -0.35 16 32 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.83 4.23 -53.09 -0.22 0.60 16 41 H 0.17 1.78 8.06 -52.49 -0.42 1.35 16 42 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 43 H 0.41 1.23 8.59 -40.82 -0.35 0.88 16 44 H 0.41 1.31 8.93 -40.82 -0.36 0.94 16 45 H 0.11 2.18 5.37 -51.93 -0.28 1.90 16 46 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -34.26 373.73 -7.73 -41.99 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -6.50 Total: -0.70 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: -1.89 Total: 7.44 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.15 Total: -54.26 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.21 Total: -17.36 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.26 -7.73 -41.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752514131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.715 kcal (2) G-P(sol) polarization free energy of solvation -34.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds