Wall clock time and date at job start Tue Mar 31 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 119.99761 * 2 1 4 4 H 1.08005 * 120.00218 * 203.73859 * 3 2 1 5 5 C 1.38819 * 119.99771 * 23.74237 * 3 2 1 6 6 N 1.31611 * 120.00336 * 11.70334 * 5 3 2 7 7 Si 1.86804 * 119.99545 * 191.70148 * 5 3 2 8 8 H 1.48504 * 109.47025 * 90.00425 * 7 5 3 9 9 H 1.48502 * 109.46925 * 209.99984 * 7 5 3 10 10 H 1.48496 * 109.47354 * 329.99998 * 7 5 3 11 11 C 1.46495 * 120.00201 * 179.97438 * 2 1 3 12 12 C 1.53003 * 109.46854 * 90.00492 * 11 2 1 13 13 H 1.08995 * 109.50182 * 55.06187 * 12 11 2 14 14 C 1.53045 * 109.49828 * 175.16180 * 12 11 2 15 15 C 1.53038 * 109.53917 * 181.31330 * 14 12 11 16 16 C 1.53623 * 109.24024 * 298.50952 * 15 14 12 17 17 N 1.46922 * 108.54471 * 54.86013 * 16 15 14 18 18 C 1.34777 * 120.63397 * 126.36423 * 17 16 15 19 19 O 1.21613 * 120.00142 * 187.20245 * 18 17 16 20 20 C 1.47285 * 119.99803 * 7.20198 * 18 17 16 21 21 C 1.36572 * 125.80684 * 187.26058 * 20 18 17 22 22 C 1.40060 * 106.92644 * 179.97438 * 21 20 18 23 23 C 1.36560 * 106.92797 * 359.97438 * 22 21 20 24 24 C 1.47294 * 125.80507 * 179.97438 * 23 22 21 25 25 N 1.34782 * 119.99908 * 180.02562 * 24 23 22 26 26 O 1.21613 * 119.99944 * 0.02983 * 24 23 22 27 27 O 1.34545 * 108.39031 * 0.02562 * 23 22 21 28 28 C 1.46929 * 118.73506 * 306.09028 * 17 16 15 29 29 H 1.08996 * 109.47435 * 276.34984 * 1 2 3 30 30 H 1.09000 * 109.47728 * 36.35752 * 1 2 3 31 31 H 1.09002 * 109.46631 * 156.35704 * 1 2 3 32 32 H 0.97001 * 120.00639 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47583 * 330.00469 * 11 2 1 34 34 H 1.09004 * 109.47367 * 209.99663 * 11 2 1 35 35 H 1.09004 * 109.45705 * 301.33648 * 14 12 11 36 36 H 1.09005 * 109.45870 * 61.30305 * 14 12 11 37 37 H 1.08997 * 109.49633 * 58.59086 * 15 14 12 38 38 H 1.09006 * 109.49740 * 178.65298 * 15 14 12 39 39 H 1.08995 * 109.74195 * 295.11721 * 16 15 14 40 40 H 1.09006 * 109.65980 * 174.54532 * 16 15 14 41 41 H 1.07998 * 126.53384 * 359.71301 * 21 20 18 42 42 H 1.08006 * 126.53380 * 179.97438 * 22 21 20 43 43 H 0.97003 * 120.00060 * 0.02562 * 25 24 23 44 44 H 0.97001 * 119.99723 * 179.97438 * 25 24 23 45 45 H 1.08999 * 109.58351 * 173.64675 * 28 17 16 46 46 H 1.09000 * 109.58694 * 293.92996 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1611 1.2256 -0.3765 5 6 1.5435 2.3372 0.4840 6 7 0.4112 2.2548 1.1498 7 14 2.3352 4.0035 0.1904 8 1 1.8314 4.5731 -1.0851 9 1 1.9939 4.9178 1.3097 10 1 3.8096 3.8444 0.1133 11 6 2.1975 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 1 2.9653 -0.9145 -1.9812 14 6 3.3208 -2.9712 -1.4437 15 6 3.6038 -3.3956 -2.8866 16 6 2.2765 -3.7222 -3.5878 17 7 1.3848 -2.5610 -3.4646 18 6 0.8192 -2.0105 -4.5571 19 8 0.1903 -0.9742 -4.4596 20 6 0.9628 -2.6641 -5.8692 21 6 0.5634 -2.1458 -7.0680 22 6 0.8884 -3.0908 -8.0493 23 6 1.4728 -4.1453 -7.4079 24 6 1.9753 -5.3726 -8.0488 25 7 2.5335 -6.3440 -7.2996 26 8 1.8867 -5.5093 -9.2540 27 8 1.5106 -3.8729 -6.0909 28 6 1.1167 -2.0150 -2.1272 29 1 -0.3634 0.1137 1.0213 30 1 -0.3634 0.8276 -0.6092 31 1 -0.3633 -0.9415 -0.4122 32 1 -0.0121 3.0592 1.4884 33 1 1.6085 -2.0281 0.5146 34 1 3.1500 -1.1381 0.5143 35 1 4.2622 -2.7643 -0.9347 36 1 2.7965 -3.7741 -0.9254 37 1 4.1060 -2.5838 -3.4127 38 1 4.2419 -4.2793 -2.8874 39 1 1.8145 -4.5893 -3.1159 40 1 2.4603 -3.9316 -4.6416 41 1 0.0841 -1.1914 -7.2281 42 1 0.7107 -3.0024 -9.1110 43 1 2.6039 -6.2351 -6.3383 44 1 2.8641 -7.1525 -7.7216 45 1 0.5350 -1.0976 -2.2170 46 1 0.5598 -2.7447 -1.5395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752514131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:27 Heat of formation + Delta-G solvation = -50.412423 kcal Electronic energy + Delta-G solvation = -29591.480040 eV Core-core repulsion = 25482.840259 eV Total energy + Delta-G solvation = -4108.639781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.06616 -41.18809 -40.32394 -39.00424 -37.27114 -35.05445 -34.71471 -34.10405 -33.21729 -31.92916 -31.18002 -28.34130 -27.44808 -26.89096 -25.10541 -24.03538 -23.17109 -22.51748 -21.85953 -21.44762 -20.66761 -19.34056 -18.71576 -18.47926 -17.95663 -17.84449 -17.32609 -16.89807 -16.33488 -16.03700 -15.66844 -15.56419 -15.39887 -15.33231 -15.03977 -14.86491 -14.43141 -14.38258 -14.24588 -14.07716 -13.95220 -13.76893 -13.10536 -13.02750 -12.83771 -12.54526 -12.31325 -12.08362 -11.96855 -11.87130 -11.86411 -11.71357 -11.55870 -11.37661 -11.31286 -11.19879 -10.89372 -10.62167 -10.08660 -9.66828 -8.72801 -7.80764 -5.31013 -0.56769 0.73661 1.04816 1.42272 1.45637 1.52562 1.79826 1.93629 1.96315 2.37649 2.49930 3.24731 3.31430 3.62846 3.66658 3.82614 3.91534 3.96894 4.08107 4.11882 4.24438 4.33357 4.36336 4.54955 4.66711 4.73239 4.77246 4.82303 4.84597 4.89902 4.95544 5.03256 5.07519 5.13158 5.22935 5.35940 5.36525 5.42610 5.49343 5.59137 5.64021 5.72126 5.72693 6.17904 6.24236 6.34847 6.82371 7.04933 7.16777 7.90211 8.32766 9.20893 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018743 B = 0.002808 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.513144 B = 9968.317939 C =10692.142204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.618 5.618 3 C -0.256 4.256 4 H 0.066 0.934 5 C -0.055 4.055 6 N -0.939 5.939 7 Si 0.963 3.037 8 H -0.293 1.293 9 H -0.292 1.292 10 H -0.266 1.266 11 C 0.156 3.844 12 C -0.109 4.109 13 H 0.038 0.962 14 C -0.108 4.108 15 C -0.126 4.126 16 C 0.091 3.909 17 N -0.595 5.595 18 C 0.586 3.414 19 O -0.558 6.558 20 C -0.042 4.042 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.059 4.059 24 C 0.613 3.387 25 N -0.815 5.815 26 O -0.554 6.554 27 O -0.133 6.133 28 C 0.127 3.873 29 H 0.007 0.993 30 H 0.001 0.999 31 H 0.033 0.967 32 H 0.247 0.753 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.049 0.951 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.171 0.829 42 H 0.183 0.817 43 H 0.421 0.579 44 H 0.423 0.577 45 H 0.060 0.940 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.414 -22.706 -14.531 27.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.341 5.341 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.250 4.250 6 N -0.586 5.586 7 Si 0.791 3.209 8 H -0.221 1.221 9 H -0.218 1.218 10 H -0.191 1.191 11 C 0.030 3.970 12 C -0.131 4.131 13 H 0.057 0.943 14 C -0.146 4.146 15 C -0.164 4.164 16 C -0.030 4.030 17 N -0.326 5.326 18 C 0.374 3.626 19 O -0.438 6.438 20 C -0.096 4.096 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.113 4.113 24 C 0.396 3.604 25 N -0.380 5.380 26 O -0.433 6.433 27 O -0.030 6.030 28 C 0.005 3.995 29 H 0.025 0.975 30 H 0.020 0.980 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.132 0.868 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.188 0.812 42 H 0.200 0.800 43 H 0.253 0.747 44 H 0.257 0.743 45 H 0.079 0.921 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.013 -22.216 -14.870 27.402 hybrid contribution -0.013 1.634 0.270 1.656 sum 6.001 -20.582 -14.600 25.939 Atomic orbital electron populations 1.20541 0.83171 0.95406 0.97413 1.44100 1.01867 1.01900 1.86225 1.19441 0.98602 0.87236 1.33361 0.91606 1.25773 0.98671 1.01796 0.98774 1.70206 1.20518 1.27514 1.40354 0.85327 0.78609 0.80327 0.76592 1.22064 1.21841 1.19050 1.20943 0.95910 0.86625 0.93565 1.22021 0.95188 0.97934 0.97990 0.94302 1.21538 0.99745 0.96022 0.97313 1.21985 0.96370 1.02849 0.95224 1.22605 0.89979 0.86973 1.03402 1.48240 1.46140 1.32236 1.05978 1.17195 0.79809 0.83415 0.82200 1.90908 1.44399 1.23841 1.84659 1.22100 1.05418 0.86439 0.95614 1.22183 1.01165 1.02059 0.90139 1.22178 0.98887 0.91561 1.02163 1.22631 1.07957 0.98988 0.81694 1.16532 0.77311 0.81113 0.85398 1.43528 1.61176 1.20499 1.12774 1.90925 1.58685 1.79251 1.14458 1.84202 1.62059 1.31799 1.24901 1.21705 0.97971 0.98941 0.80886 0.97489 0.98036 0.94891 0.94414 0.92485 0.93209 0.91013 0.89747 0.93225 0.86798 0.88124 0.87371 0.81195 0.79959 0.74728 0.74273 0.92098 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.20 7.91 127.77 1.01 10.21 16 2 N -0.62 -31.21 2.76 -726.94 -2.01 -33.22 16 3 C -0.26 -14.43 9.65 84.04 0.81 -13.62 16 4 H 0.07 3.63 7.86 -2.91 -0.02 3.60 16 5 C -0.06 -3.22 5.14 84.86 0.44 -2.79 16 6 N -0.94 -57.56 10.67 21.65 0.23 -57.33 16 7 Si 0.96 47.06 29.57 68.60 2.03 49.08 16 8 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 9 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 10 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 11 C 0.16 5.92 5.13 86.38 0.44 6.37 16 12 C -0.11 -3.46 2.55 -10.71 -0.03 -3.49 16 13 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 14 C -0.11 -2.19 5.16 30.62 0.16 -2.04 16 15 C -0.13 -1.96 6.10 30.82 0.19 -1.78 16 16 C 0.09 1.46 6.14 86.51 0.53 1.99 16 17 N -0.60 -15.97 2.97 -822.11 -2.44 -18.41 16 18 C 0.59 18.30 7.67 86.62 0.66 18.96 16 19 O -0.56 -22.93 16.30 -4.07 -0.07 -22.99 16 20 C -0.04 -1.00 6.78 24.26 0.16 -0.84 16 21 C -0.13 -2.97 10.60 22.32 0.24 -2.73 16 22 C -0.13 -2.34 10.60 22.32 0.24 -2.10 16 23 C -0.06 -1.01 7.14 24.26 0.17 -0.83 16 24 C 0.61 9.35 8.08 86.62 0.70 10.05 16 25 N -0.82 -4.91 8.87 -175.98 -1.56 -6.47 16 26 O -0.55 -12.45 17.70 -4.07 -0.07 -12.52 16 27 O -0.13 -2.27 6.99 -7.31 -0.05 -2.32 16 28 C 0.13 4.06 4.46 86.36 0.38 4.44 16 29 H 0.01 0.38 7.25 -2.39 -0.02 0.37 16 30 H 0.00 0.05 7.44 -2.39 -0.02 0.03 16 31 H 0.03 1.42 6.33 -2.39 -0.02 1.41 16 32 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.05 1.90 8.04 -2.39 -0.02 1.88 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.47 4.23 -20.87 -0.09 1.38 16 41 H 0.17 3.65 8.06 -2.91 -0.02 3.62 16 42 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.42 0.59 8.59 -92.71 -0.80 -0.21 16 44 H 0.42 1.08 8.93 -92.71 -0.83 0.25 16 45 H 0.06 2.57 5.37 -2.39 -0.01 2.55 16 46 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 Total: -1.00 -79.64 373.73 1.50 -78.14 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -0.67 Total: 4.23 kcal Atomic # 6 Polarization: 15.71 SS G_CDS: 6.11 Total: 21.82 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -5.78 Total: -115.43 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.19 Total: -37.84 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -79.64 1.50 -78.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752514131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.723 kcal (2) G-P(sol) polarization free energy of solvation -79.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds