Wall clock time and date at job start Tue Mar 31 2020 18:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 110.99794 * 2 1 4 4 C 1.52994 * 109.47382 * 66.04672 * 3 2 1 5 5 N 1.46496 * 109.47414 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00281 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.46656 * 120.00352 * 179.97438 * 6 5 4 9 9 O 1.34942 * 126.00333 * 0.04896 * 8 6 5 10 10 C 1.33954 * 109.37664 * 179.97438 * 9 8 6 11 11 C 1.35145 * 108.75142 * 0.02562 * 10 9 8 12 12 C 1.36469 * 126.00852 * 179.97438 * 8 6 5 13 13 C 1.51072 * 143.67076 * 0.04686 * 12 8 6 14 14 C 1.54377 * 105.24220 * 197.15463 * 13 12 8 15 15 C 1.51140 * 143.44130 * 179.97438 * 11 10 9 16 16 C 1.46902 * 111.00105 * 236.04812 * 2 1 3 17 17 C 1.50699 * 109.46614 * 293.95427 * 16 2 1 18 18 O 1.21296 * 120.00457 * 359.97438 * 17 16 2 19 19 N 1.34781 * 119.99580 * 180.02562 * 17 16 2 20 20 C 1.37101 * 119.99726 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00256 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99856 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00109 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99841 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47001 * 90.00673 * 24 22 20 26 26 H 1.48506 * 109.47172 * 209.99809 * 24 22 20 27 27 H 1.48494 * 109.47256 * 330.00170 * 24 22 20 28 28 H 1.08997 * 109.47349 * 59.99849 * 1 2 3 29 29 H 1.08997 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47024 * 300.00217 * 1 2 3 31 31 H 1.08996 * 109.47134 * 306.04036 * 3 2 1 32 32 H 1.09005 * 109.46782 * 186.04767 * 3 2 1 33 33 H 1.09008 * 109.47127 * 59.99415 * 4 3 2 34 34 H 1.08996 * 109.47391 * 300.00088 * 4 3 2 35 35 H 0.97004 * 119.99803 * 359.97438 * 5 4 3 36 36 H 1.07994 * 125.62301 * 180.25735 * 10 9 8 37 37 H 1.09003 * 110.29018 * 316.09506 * 13 12 8 38 38 H 1.09002 * 110.29614 * 78.11070 * 13 12 8 39 39 H 1.08995 * 110.76343 * 91.85657 * 14 13 12 40 40 H 1.09000 * 110.75791 * 215.04954 * 14 13 12 41 41 H 1.09000 * 110.29225 * 281.80118 * 15 11 10 42 42 H 1.08998 * 110.29123 * 43.90858 * 15 11 10 43 43 H 1.09003 * 109.47081 * 53.95041 * 16 2 1 44 44 H 1.08993 * 109.47147 * 173.95373 * 16 2 1 45 45 H 0.96996 * 119.99865 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00120 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4250 1.3184 6 6 1.9556 4.2241 2.3849 7 8 1.3378 3.8095 3.3479 8 6 2.4822 5.5929 2.3854 9 8 3.1807 6.1744 1.3880 10 6 3.4958 7.4283 1.7385 11 6 3.0021 7.6715 2.9728 12 6 2.3506 6.5027 3.3940 13 6 1.7739 6.7150 4.7741 14 6 1.7515 8.2457 4.9736 15 6 2.8942 8.7247 4.0514 16 6 1.9954 -0.7659 -1.1376 17 6 1.6369 -2.2203 -0.9728 18 8 1.0053 -2.5832 -0.0029 19 7 2.0188 -3.1181 -1.9028 20 6 1.6931 -4.4413 -1.7526 21 1 1.1301 -4.7643 -0.8894 22 6 2.0873 -5.3669 -2.7110 23 7 1.7747 -6.6351 -2.5674 24 14 3.0606 -4.8081 -4.2044 25 1 4.5129 -4.8745 -3.9018 26 1 2.7538 -5.6950 -5.3553 27 1 2.6887 -3.4110 -4.5431 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 2.0657 1.5016 2.1492 34 1 0.5472 2.0845 1.4265 35 1 2.6497 3.7553 0.5510 36 1 4.0494 8.1305 1.1329 37 1 0.7625 6.3120 4.8272 38 1 2.4077 6.2437 5.5253 39 1 0.7958 8.6627 4.6562 40 1 1.9575 8.5029 6.0125 41 1 3.8289 8.7930 4.6080 42 1 2.6432 9.6905 3.6129 43 1 1.5610 -0.3872 -2.0628 44 1 3.0796 -0.6611 -1.1756 45 1 2.5242 -2.8279 -2.6782 46 1 2.0503 -7.2814 -3.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753058607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:48 Heat of formation + Delta-G solvation = -35.323126 kcal Electronic energy + Delta-G solvation = -27521.021850 eV Core-core repulsion = 23413.036391 eV Total energy + Delta-G solvation = -4107.985460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.27021 -39.72919 -38.79551 -37.73995 -36.91941 -34.77791 -33.86636 -31.68409 -31.15334 -31.03103 -29.62609 -27.95457 -27.38580 -25.45084 -24.14413 -23.22035 -22.02392 -21.31907 -20.67747 -19.92885 -19.36113 -18.28257 -17.95128 -16.97473 -16.51939 -16.26539 -16.01995 -15.81217 -15.47170 -15.04996 -14.98814 -14.68638 -14.46188 -14.16834 -13.85226 -13.70479 -13.39252 -13.19092 -13.09183 -13.05131 -12.44227 -12.18607 -12.08817 -12.05897 -11.87809 -11.64165 -11.60437 -11.55829 -11.38772 -11.14864 -11.04939 -10.60560 -10.55022 -9.97749 -9.69763 -9.54419 -9.39791 -8.92060 -8.60945 -8.18574 -8.02281 -6.31019 -3.82459 0.69845 1.88085 2.28166 2.87046 2.88882 3.01587 3.06277 3.14595 3.58853 3.72892 3.98000 4.10077 4.29092 4.33835 4.57363 4.65803 4.68122 4.73104 4.79583 4.97105 5.10215 5.20577 5.22692 5.29043 5.31464 5.41746 5.47466 5.50525 5.58832 5.62905 5.68632 5.74404 5.76823 5.78773 5.80948 5.89498 5.94435 5.95343 6.07963 6.42914 6.49471 7.06384 7.17274 7.22516 7.58171 7.81491 8.14630 8.60118 8.95383 9.42319 9.83184 10.82090 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001670 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.164051 B =16758.820633 C =17380.972214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.515 5.515 3 C 0.044 3.956 4 C 0.121 3.879 5 N -0.719 5.719 6 C 0.603 3.397 7 O -0.514 6.514 8 C -0.064 4.064 9 O -0.158 6.158 10 C 0.010 3.990 11 C -0.218 4.218 12 C -0.104 4.104 13 C -0.056 4.056 14 C -0.119 4.119 15 C -0.047 4.047 16 C 0.044 3.956 17 C 0.452 3.548 18 O -0.557 6.557 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 H 0.017 0.983 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.211 0.789 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.370 0.630 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.740 33.902 6.478 34.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.239 5.239 3 C -0.085 4.085 4 C -0.002 4.002 5 N -0.370 5.370 6 C 0.389 3.611 7 O -0.391 6.391 8 C -0.116 4.116 9 O -0.054 6.054 10 C -0.059 4.059 11 C -0.220 4.220 12 C -0.107 4.107 13 C -0.093 4.093 14 C -0.157 4.157 15 C -0.084 4.084 16 C -0.087 4.087 17 C 0.238 3.762 18 O -0.439 6.439 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 H 0.035 0.965 29 H 0.117 0.883 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.227 0.773 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.203 0.797 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.069 32.686 7.917 33.876 hybrid contribution 0.922 0.941 -2.544 2.865 sum 4.991 33.627 5.373 34.417 Atomic orbital electron populations 1.22655 0.86256 1.04901 0.99330 1.61433 1.09120 1.10463 1.42866 1.22251 1.00871 0.89705 0.95646 1.21420 0.99855 0.79995 0.98970 1.45820 1.57402 1.14481 1.19300 1.16469 0.79705 0.81743 0.83183 1.90904 1.40834 1.73195 1.34192 1.21143 1.05848 0.95080 0.89512 1.84174 1.56812 1.24547 1.39830 1.23372 1.02130 0.84391 0.96038 1.21364 1.04819 0.99087 0.96709 1.21239 0.99407 0.92772 0.97315 1.20587 1.01811 0.96194 0.90739 1.22406 0.98734 0.94555 0.99971 1.20466 0.99373 0.95770 0.92797 1.21903 1.00823 0.94080 0.91918 1.19603 0.85189 0.86384 0.85030 1.90539 1.42570 1.79889 1.30896 1.42205 1.51052 1.08367 1.21435 1.19433 1.33821 0.80280 1.09792 0.86235 1.25033 0.97885 0.95131 0.98093 1.69620 1.45618 1.01140 1.35734 0.86674 0.80913 0.78669 0.83123 1.19611 1.20206 1.19570 0.96491 0.88270 0.91627 0.94386 0.90129 0.89752 0.90708 0.76167 0.77268 0.89824 0.89563 0.90748 0.90062 0.90166 0.90703 0.93198 0.89147 0.79744 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 8.96 60.06 0.54 0.79 16 2 N -0.51 -8.02 4.50 -244.38 -1.10 -9.12 16 3 C 0.04 0.50 5.07 -3.82 -0.02 0.48 16 4 C 0.12 1.41 5.60 -4.05 -0.02 1.39 16 5 N -0.72 -7.40 5.55 -61.63 -0.34 -7.74 16 6 C 0.60 7.50 7.79 -12.86 -0.10 7.40 16 7 O -0.51 -8.05 16.87 5.19 0.09 -7.96 16 8 C -0.06 -0.70 7.13 -36.82 -0.26 -0.96 16 9 O -0.16 -1.39 10.40 4.85 0.05 -1.34 16 10 C 0.01 0.07 12.08 29.63 0.36 0.42 16 11 C -0.22 -1.70 6.93 -104.74 -0.73 -2.43 16 12 C -0.10 -1.05 6.66 -104.31 -0.69 -1.75 16 13 C -0.06 -0.47 6.76 -26.98 -0.18 -0.65 16 14 C -0.12 -0.66 7.06 -25.25 -0.18 -0.83 16 15 C -0.05 -0.25 6.76 -26.91 -0.18 -0.43 16 16 C 0.04 0.72 5.45 -4.98 -0.03 0.69 16 17 C 0.45 10.15 7.47 -10.98 -0.08 10.07 16 18 O -0.56 -14.75 13.91 5.54 0.08 -14.67 16 19 N -0.59 -13.94 5.09 -10.96 -0.06 -14.00 16 20 C -0.30 -8.57 10.16 -14.93 -0.15 -8.73 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 24 Si 0.88 19.23 27.74 -169.99 -4.71 14.51 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.10 1.91 5.82 -51.93 -0.30 1.60 16 30 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 31 H 0.04 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.08 0.81 7.93 -51.93 -0.41 0.39 16 33 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.07 0.94 6.55 -51.93 -0.34 0.60 16 35 H 0.40 3.16 8.23 -40.82 -0.34 2.82 16 36 H 0.21 0.51 8.06 -52.49 -0.42 0.08 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.72 8.12 -51.93 -0.42 0.29 16 44 H 0.09 1.26 7.93 -51.93 -0.41 0.85 16 45 H 0.37 7.63 5.76 -40.82 -0.24 7.39 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 381.95 15.07 5.76 5.76 Total: -1.00 -35.32 381.95 -7.87 -43.19 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -6.58 Total: 9.79 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -1.83 Total: 6.50 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.72 Total: -55.78 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.22 Total: -23.98 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -4.71 Total: 14.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.32 -7.87 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753058607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.868 kcal (2) G-P(sol) polarization free energy of solvation -35.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds