Wall clock time and date at job start Tue Mar 31 2020 18:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 110.99794 * 2 1 4 4 C 1.52994 * 109.47382 * 66.04672 * 3 2 1 5 5 N 1.46496 * 109.47414 * 179.97438 * 4 3 2 6 6 C 1.34774 * 120.00281 * 179.97438 * 5 4 3 7 7 O 1.21694 * 119.99991 * 0.02562 * 6 5 4 8 8 C 1.46656 * 120.00352 * 179.97438 * 6 5 4 9 9 O 1.34942 * 126.00333 * 0.04896 * 8 6 5 10 10 C 1.33954 * 109.37664 * 179.97438 * 9 8 6 11 11 C 1.35145 * 108.75142 * 0.02562 * 10 9 8 12 12 C 1.36469 * 126.00852 * 179.97438 * 8 6 5 13 13 C 1.51072 * 143.67076 * 0.04686 * 12 8 6 14 14 C 1.54377 * 105.24220 * 197.15463 * 13 12 8 15 15 C 1.51140 * 143.44130 * 179.97438 * 11 10 9 16 16 C 1.46902 * 111.00105 * 236.04812 * 2 1 3 17 17 C 1.50699 * 109.46614 * 293.95427 * 16 2 1 18 18 O 1.21296 * 120.00457 * 359.97438 * 17 16 2 19 19 N 1.34781 * 119.99580 * 180.02562 * 17 16 2 20 20 C 1.37101 * 119.99726 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00256 * 0.02562 * 20 19 17 22 22 C 1.38950 * 119.99856 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00109 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99841 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47001 * 90.00673 * 24 22 20 26 26 H 1.48506 * 109.47172 * 209.99809 * 24 22 20 27 27 H 1.48494 * 109.47256 * 330.00170 * 24 22 20 28 28 H 1.08997 * 109.47349 * 59.99849 * 1 2 3 29 29 H 1.08997 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47024 * 300.00217 * 1 2 3 31 31 H 1.08996 * 109.47134 * 306.04036 * 3 2 1 32 32 H 1.09005 * 109.46782 * 186.04767 * 3 2 1 33 33 H 1.09008 * 109.47127 * 59.99415 * 4 3 2 34 34 H 1.08996 * 109.47391 * 300.00088 * 4 3 2 35 35 H 0.97004 * 119.99803 * 359.97438 * 5 4 3 36 36 H 1.07994 * 125.62301 * 180.25735 * 10 9 8 37 37 H 1.09003 * 110.29018 * 316.09506 * 13 12 8 38 38 H 1.09002 * 110.29614 * 78.11070 * 13 12 8 39 39 H 1.08995 * 110.76343 * 91.85657 * 14 13 12 40 40 H 1.09000 * 110.75791 * 215.04954 * 14 13 12 41 41 H 1.09000 * 110.29225 * 281.80118 * 15 11 10 42 42 H 1.08998 * 110.29123 * 43.90858 * 15 11 10 43 43 H 1.09003 * 109.47081 * 53.95041 * 16 2 1 44 44 H 1.08993 * 109.47147 * 173.95373 * 16 2 1 45 45 H 0.96996 * 119.99865 * 359.97438 * 19 17 16 46 46 H 0.97002 * 120.00120 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1569 3.4250 1.3184 6 6 1.9556 4.2241 2.3849 7 8 1.3378 3.8095 3.3479 8 6 2.4822 5.5929 2.3854 9 8 3.1807 6.1744 1.3880 10 6 3.4958 7.4283 1.7385 11 6 3.0021 7.6715 2.9728 12 6 2.3506 6.5027 3.3940 13 6 1.7739 6.7150 4.7741 14 6 1.7515 8.2457 4.9736 15 6 2.8942 8.7247 4.0514 16 6 1.9954 -0.7659 -1.1376 17 6 1.6369 -2.2203 -0.9728 18 8 1.0053 -2.5832 -0.0029 19 7 2.0188 -3.1181 -1.9028 20 6 1.6931 -4.4413 -1.7526 21 1 1.1301 -4.7643 -0.8894 22 6 2.0873 -5.3669 -2.7110 23 7 1.7747 -6.6351 -2.5674 24 14 3.0606 -4.8081 -4.2044 25 1 4.5129 -4.8745 -3.9018 26 1 2.7538 -5.6950 -5.3553 27 1 2.6887 -3.4110 -4.5431 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.5611 1.9274 -0.8309 32 1 3.0797 1.3444 -0.1083 33 1 2.0657 1.5016 2.1492 34 1 0.5472 2.0845 1.4265 35 1 2.6497 3.7553 0.5510 36 1 4.0494 8.1305 1.1329 37 1 0.7625 6.3120 4.8272 38 1 2.4077 6.2437 5.5253 39 1 0.7958 8.6627 4.6562 40 1 1.9575 8.5029 6.0125 41 1 3.8289 8.7930 4.6080 42 1 2.6432 9.6905 3.6129 43 1 1.5610 -0.3872 -2.0628 44 1 3.0796 -0.6611 -1.1756 45 1 2.5242 -2.8279 -2.6782 46 1 2.0503 -7.2814 -3.2363 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753058607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:48 Heat of formation + Delta-G solvation = -63.746140 kcal Electronic energy + Delta-G solvation = -27522.254365 eV Core-core repulsion = 23413.036391 eV Total energy + Delta-G solvation = -4109.217974 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.89086 -40.75173 -40.39378 -38.34007 -38.17977 -36.08268 -35.59648 -33.74423 -31.90369 -31.60880 -30.60562 -29.23778 -28.06614 -26.97266 -25.46515 -24.05468 -22.73955 -22.36878 -21.31572 -21.23772 -20.70612 -20.16796 -18.67906 -17.79204 -17.63155 -17.39747 -16.95737 -16.82822 -16.73828 -16.26779 -16.04369 -15.80426 -15.44951 -15.31067 -15.06648 -14.89874 -14.70158 -14.41157 -14.22378 -13.99651 -13.72024 -13.67533 -13.10181 -12.98671 -12.69068 -12.64996 -12.60741 -12.55820 -12.39847 -12.16937 -12.09788 -12.07748 -11.96570 -11.54348 -11.45925 -10.41243 -10.36935 -10.22491 -10.21636 -9.56742 -9.26098 -8.39772 -6.00695 -0.03361 1.29757 1.30937 1.37170 1.45754 1.55317 1.98001 2.01226 2.06436 2.24570 2.74563 3.02798 3.16041 3.27766 3.67561 3.79458 3.84582 4.02723 4.11722 4.12596 4.15586 4.17901 4.34734 4.43861 4.44239 4.51976 4.61347 4.62039 4.77445 4.80946 4.81745 4.89932 4.93826 5.00298 5.08132 5.16770 5.17916 5.20433 5.31118 5.41701 5.54297 5.77700 5.87074 5.99086 6.12122 6.37600 6.61562 6.90509 6.95086 7.41810 8.00011 8.78015 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.033122 B = 0.001670 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.164051 B =16758.820633 C =17380.972214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.054 3.946 4 C 0.127 3.873 5 N -0.703 5.703 6 C 0.600 3.400 7 O -0.560 6.560 8 C -0.096 4.096 9 O -0.159 6.159 10 C 0.029 3.971 11 C -0.233 4.233 12 C -0.122 4.122 13 C -0.064 4.064 14 C -0.113 4.113 15 C -0.044 4.044 16 C 0.057 3.943 17 C 0.449 3.551 18 O -0.607 6.607 19 N -0.592 5.592 20 C -0.328 4.328 21 H 0.053 0.947 22 C -0.016 4.016 23 N -0.936 5.936 24 Si 0.966 3.034 25 H -0.257 1.257 26 H -0.277 1.277 27 H -0.229 1.229 28 H 0.040 0.960 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.419 0.581 36 H 0.257 0.743 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.126 0.874 45 H 0.390 0.610 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.406 38.499 3.688 39.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.267 5.267 3 C -0.074 4.074 4 C 0.004 3.996 5 N -0.355 5.355 6 C 0.388 3.612 7 O -0.441 6.441 8 C -0.147 4.147 9 O -0.055 6.055 10 C -0.040 4.040 11 C -0.234 4.234 12 C -0.125 4.125 13 C -0.101 4.101 14 C -0.151 4.151 15 C -0.081 4.081 16 C -0.074 4.074 17 C 0.237 3.763 18 O -0.491 6.491 19 N -0.234 5.234 20 C -0.457 4.457 21 H 0.071 0.929 22 C -0.215 4.215 23 N -0.577 5.577 24 Si 0.786 3.214 25 H -0.181 1.181 26 H -0.202 1.202 27 H -0.152 1.152 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.256 0.744 36 H 0.272 0.728 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.102 0.898 44 H 0.144 0.856 45 H 0.226 0.774 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.753 37.328 5.102 38.275 hybrid contribution 0.035 -0.445 -1.524 1.588 sum 6.788 36.883 3.578 37.672 Atomic orbital electron populations 1.22484 0.86894 1.02361 1.00833 1.61295 1.08920 1.13172 1.43301 1.22234 1.02135 0.87291 0.95726 1.21224 0.99035 0.80530 0.98857 1.45623 1.56893 1.13620 1.19336 1.16731 0.79111 0.82543 0.82860 1.90870 1.43022 1.74358 1.35841 1.20823 1.08227 0.94799 0.90896 1.84160 1.56561 1.25527 1.39237 1.24330 1.00153 0.83620 0.95915 1.21789 1.05008 0.98898 0.97708 1.21695 0.99317 0.93746 0.97745 1.20711 1.00620 0.98532 0.90279 1.22428 0.99290 0.92005 1.01340 1.20541 0.99630 0.95826 0.92073 1.21839 1.03090 0.88994 0.93470 1.20946 0.82944 0.88968 0.83435 1.90533 1.44205 1.81477 1.32874 1.42016 1.51886 1.06713 1.22760 1.18995 1.34807 0.83183 1.08745 0.92858 1.26136 0.98681 0.94633 1.02029 1.69812 1.47245 1.03063 1.37572 0.85346 0.78960 0.80204 0.76866 1.18140 1.20181 1.15224 0.94194 0.92702 0.90957 0.91688 0.87882 0.92064 0.91893 0.74405 0.72773 0.91563 0.89879 0.90474 0.88257 0.89074 0.88760 0.89816 0.85612 0.77442 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 8.96 127.69 1.14 1.83 16 2 N -0.54 -15.89 4.50 -927.07 -4.17 -20.06 16 3 C 0.05 1.05 5.07 86.30 0.44 1.48 16 4 C 0.13 2.89 5.60 86.38 0.48 3.37 16 5 N -0.70 -13.75 5.55 -467.12 -2.59 -16.34 16 6 C 0.60 15.19 7.79 86.44 0.67 15.87 16 7 O -0.56 -18.58 16.87 -4.33 -0.07 -18.66 16 8 C -0.10 -2.05 7.13 24.06 0.17 -1.88 16 9 O -0.16 -2.46 10.40 -5.55 -0.06 -2.52 16 10 C 0.03 0.28 12.08 67.11 0.81 1.10 16 11 C -0.23 -3.09 6.93 -19.94 -0.14 -3.22 16 12 C -0.12 -2.42 6.66 -19.66 -0.13 -2.55 16 13 C -0.06 -1.09 6.76 30.43 0.21 -0.89 16 14 C -0.11 -1.07 7.06 31.56 0.22 -0.85 16 15 C -0.04 -0.35 6.76 30.48 0.21 -0.14 16 16 C 0.06 1.67 5.45 85.56 0.47 2.14 16 17 C 0.45 20.13 7.47 87.66 0.66 20.79 16 18 O -0.61 -33.74 13.91 -3.08 -0.04 -33.78 16 19 N -0.59 -27.66 5.09 -306.97 -1.56 -29.22 16 20 C -0.33 -19.28 10.16 84.04 0.85 -18.42 16 21 H 0.05 3.75 7.39 -2.91 -0.02 3.73 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.45 16 23 N -0.94 -56.76 13.96 21.66 0.30 -56.46 16 24 Si 0.97 38.45 27.74 68.60 1.90 40.35 16 25 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 26 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.54 6.52 99.48 0.65 -6.89 16 28 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.05 2.19 5.82 -2.39 -0.01 2.18 16 30 H 0.07 2.07 6.47 -2.39 -0.02 2.05 16 31 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 32 H 0.10 1.59 7.93 -2.38 -0.02 1.57 16 33 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 1.58 6.55 -2.39 -0.02 1.57 16 35 H 0.42 5.56 8.23 -92.71 -0.76 4.80 16 36 H 0.26 -0.10 8.06 -2.91 -0.02 -0.12 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 1.97 8.12 -2.39 -0.02 1.95 16 44 H 0.13 2.87 7.93 -2.39 -0.02 2.85 16 45 H 0.39 14.86 5.76 -92.71 -0.53 14.33 16 46 H 0.28 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -86.60 381.95 -0.09 -86.70 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: -0.33 Total: 31.84 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 6.53 Total: 18.16 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -8.03 Total: -122.08 kcal Atomic # 8 Polarization: -54.79 SS G_CDS: -0.17 Total: -54.96 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -86.60 -0.09 -86.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753058607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.950 kcal (2) G-P(sol) polarization free energy of solvation -86.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds