Wall clock time and date at job start Tue Mar 31 2020 19:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35903 * 116.99986 * 2 1 4 4 C 1.39136 * 120.47345 * 180.02562 * 3 2 1 5 5 C 1.38534 * 118.37557 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.22211 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.55441 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46840 * 125.00403 * 7 6 5 9 9 O 1.21286 * 120.00023 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00125 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00001 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46970 * 180.02562 * 11 10 8 13 13 H 1.08999 * 109.51340 * 304.90072 * 12 11 10 14 14 C 1.53293 * 109.51243 * 184.75224 * 12 11 10 15 15 N 1.47155 * 108.38434 * 187.77314 * 14 12 11 16 16 C 1.36932 * 120.98067 * 230.50932 * 15 14 12 17 17 H 1.08008 * 119.99644 * 153.75560 * 16 15 14 18 18 C 1.38816 * 120.00176 * 333.75384 * 16 15 14 19 19 N 1.31621 * 119.99926 * 160.05294 * 18 16 15 20 20 Si 1.86798 * 119.99995 * 340.05646 * 18 16 15 21 21 H 1.48498 * 109.47053 * 91.89672 * 20 18 16 22 22 H 1.48503 * 109.46731 * 211.89350 * 20 18 16 23 23 H 1.48496 * 109.46971 * 331.89456 * 20 18 16 24 24 C 1.47151 * 118.03329 * 50.53671 * 15 14 12 25 25 C 1.53297 * 108.38304 * 309.45887 * 24 15 14 26 26 O 1.42958 * 109.51345 * 65.00380 * 12 11 10 27 27 N 1.31838 * 120.88118 * 0.26019 * 6 5 4 28 28 C 1.31846 * 121.78668 * 359.47020 * 27 6 5 29 29 H 1.09001 * 109.46989 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47201 * 300.00255 * 1 2 3 31 31 H 1.08997 * 109.46843 * 60.00725 * 1 2 3 32 32 H 1.08002 * 120.81797 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.39138 * 179.97438 * 5 4 3 34 34 H 1.08993 * 109.47731 * 5.00152 * 7 6 5 35 35 H 1.08997 * 109.47228 * 244.99579 * 7 6 5 36 36 H 0.96997 * 120.00169 * 0.02562 * 10 8 7 37 37 H 1.09001 * 109.46820 * 60.00984 * 11 10 8 38 38 H 1.08991 * 109.47180 * 300.00854 * 11 10 8 39 39 H 1.09004 * 109.68182 * 307.49759 * 14 12 11 40 40 H 1.08999 * 109.68446 * 68.04941 * 14 12 11 41 41 H 0.96991 * 120.00157 * 179.97438 * 19 18 16 42 42 H 1.09004 * 109.67933 * 189.73704 * 24 15 14 43 43 H 1.08994 * 109.71622 * 69.20589 * 24 15 14 44 44 H 1.08998 * 109.51447 * 292.38144 * 25 24 15 45 45 H 1.09000 * 109.50766 * 172.22603 * 25 24 15 46 46 H 1.07995 * 119.66002 * 180.27233 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4349 1.2952 -0.0005 5 6 4.0182 2.5518 -0.0011 6 6 3.2079 3.6721 -0.0016 7 6 3.8345 5.0426 -0.0016 8 6 3.3025 5.8381 -1.1657 9 8 2.4945 5.3408 -1.9213 10 7 3.7247 7.1020 -1.3673 11 6 3.2079 7.8752 -2.4994 12 6 3.8440 9.2667 -2.4994 13 1 3.6735 9.7449 -1.5348 14 6 3.2173 10.1161 -3.6110 15 7 3.9704 11.3763 -3.7126 16 6 3.3262 12.5846 -3.7097 17 1 3.8402 13.4698 -3.3649 18 6 2.0126 12.6719 -4.1498 19 7 1.2675 13.6983 -3.7980 20 14 1.3022 11.3327 -5.2413 21 1 0.6469 10.3018 -4.3969 22 1 0.3016 11.9256 -6.1646 23 1 2.3935 10.7063 -6.0299 24 6 5.4361 11.2994 -3.8181 25 6 5.9546 10.3924 -2.6963 26 8 5.2495 9.1493 -2.7324 27 7 1.8945 3.5573 0.0036 28 6 1.3002 2.3804 -0.0010 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 4.0433 0.4029 -0.0005 33 1 5.0932 2.6551 -0.0011 34 1 4.9166 4.9474 -0.0907 35 1 3.5902 5.5538 0.9296 36 1 4.3711 7.4996 -0.7632 37 1 2.1257 7.9701 -2.4108 38 1 3.4528 7.3641 -3.4304 39 1 3.2709 9.5790 -4.5579 40 1 2.1764 10.3292 -3.3677 41 1 0.3497 13.7596 -4.1058 42 1 5.8645 12.2961 -3.7119 43 1 5.7137 10.8818 -4.7858 44 1 5.7919 10.8755 -1.7329 45 1 7.0200 10.2109 -2.8381 46 1 0.2216 2.3264 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753653153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:32 Heat of formation + Delta-G solvation = -47.116084 kcal Electronic energy + Delta-G solvation = -28339.508912 eV Core-core repulsion = 24231.012071 eV Total energy + Delta-G solvation = -4108.496841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.01528 -39.66887 -38.79786 -38.21192 -34.93776 -34.46842 -32.73739 -32.68311 -31.60055 -31.25955 -28.71011 -27.86218 -27.28871 -25.39529 -23.70515 -23.62487 -22.59616 -21.62201 -20.52527 -19.93066 -18.50430 -17.53465 -17.18815 -16.87971 -16.45577 -16.20621 -16.20019 -15.75246 -15.31150 -15.16199 -14.53403 -14.50470 -14.42850 -14.19314 -14.08506 -13.63152 -13.53360 -13.31244 -13.04211 -12.86255 -12.47371 -12.40411 -12.26187 -12.06331 -11.90123 -11.75347 -11.66377 -11.23557 -10.83749 -10.42055 -10.32168 -10.02104 -9.89091 -9.80009 -9.58234 -9.55198 -9.42023 -8.92770 -8.64212 -8.60443 -7.07025 -6.02164 -3.39885 0.82603 1.03067 2.75985 2.80248 3.16230 3.28407 3.46065 3.48146 3.60746 4.03343 4.04303 4.34669 4.38537 4.46124 4.58546 4.73694 4.74420 4.76119 4.92030 5.00600 5.09232 5.16128 5.20223 5.23392 5.31948 5.34538 5.40840 5.58624 5.64799 5.76264 5.78226 5.81248 5.84772 6.01152 6.10305 6.17022 6.19433 6.41216 6.47116 6.55288 6.68474 6.83931 7.56955 7.60356 7.79079 7.81272 8.23451 8.34908 8.80975 9.61941 9.97868 11.13316 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.002251 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.524249 B =12437.532671 C =13504.617297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.071 3.929 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.108 3.892 7 C -0.087 4.087 8 C 0.515 3.485 9 O -0.527 6.527 10 N -0.723 5.723 11 C 0.130 3.870 12 C 0.066 3.934 13 H 0.067 0.933 14 C 0.101 3.899 15 N -0.607 5.607 16 C -0.264 4.264 17 H 0.089 0.911 18 C 0.025 3.975 19 N -0.906 5.906 20 Si 0.880 3.120 21 H -0.285 1.285 22 H -0.301 1.301 23 H -0.270 1.270 24 C 0.112 3.888 25 C 0.048 3.952 26 O -0.386 6.386 27 N -0.420 5.420 28 C 0.026 3.974 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.143 0.857 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.402 0.598 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.083 0.917 41 H 0.264 0.736 42 H 0.072 0.928 43 H 0.031 0.969 44 H 0.049 0.951 45 H 0.087 0.913 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -24.493 11.197 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.226 6.226 3 C 0.023 3.977 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.031 4.031 7 C -0.128 4.128 8 C 0.300 3.700 9 O -0.403 6.403 10 N -0.375 5.375 11 C 0.006 3.994 12 C 0.006 3.994 13 H 0.085 0.915 14 C -0.025 4.025 15 N -0.331 5.331 16 C -0.392 4.392 17 H 0.106 0.894 18 C -0.175 4.175 19 N -0.548 5.548 20 Si 0.710 3.290 21 H -0.213 1.213 22 H -0.229 1.229 23 H -0.195 1.195 24 C -0.014 4.014 25 C -0.030 4.030 26 O -0.305 6.305 27 N -0.129 5.129 28 C -0.133 4.133 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.236 0.764 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.885 -24.346 10.578 26.990 hybrid contribution -0.106 -0.788 -0.405 0.893 sum 4.779 -25.134 10.172 27.533 Atomic orbital electron populations 1.23132 0.77899 1.04319 1.01799 1.86057 1.21751 1.26145 1.88657 1.20104 0.93324 0.85760 0.98493 1.20853 0.91652 0.98729 1.02321 1.21798 1.01287 0.91622 0.99818 1.20455 0.89279 0.94304 0.99069 1.20530 1.01159 0.91806 0.99284 1.20244 0.81822 0.81696 0.86211 1.90735 1.32884 1.69810 1.46830 1.45902 1.46655 1.13982 1.30985 1.21395 0.98323 0.90079 0.89635 1.22866 0.82335 0.94290 0.99913 0.91504 1.21927 0.97083 0.87716 0.95802 1.44344 1.00959 1.01924 1.85914 1.18905 0.96257 0.86049 1.37950 0.89379 1.25261 0.96683 0.96654 0.98877 1.69814 1.07939 1.31430 1.45624 0.87022 0.78600 0.81494 0.81860 1.21283 1.22870 1.19459 1.21636 0.85189 0.98661 0.95897 1.23052 0.95309 0.85435 0.99198 1.87809 1.19089 1.30344 1.93254 1.67293 1.11472 1.26302 1.07792 1.22888 1.00524 0.86921 1.02937 0.87915 0.92343 0.92226 0.83995 0.83953 0.87256 0.87098 0.76355 0.90024 0.90805 0.94484 0.89920 0.92590 0.90980 0.95071 0.93286 0.89511 0.82608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.82 101.05 0.99 1.12 16 2 O -0.31 -2.87 10.51 -19.44 -0.20 -3.07 16 3 C 0.07 0.73 6.71 -39.07 -0.26 0.46 16 4 C -0.11 -1.00 10.13 -39.14 -0.40 -1.40 16 5 C -0.13 -1.13 9.70 -39.46 -0.38 -1.51 16 6 C 0.11 1.24 5.76 -82.58 -0.48 0.76 16 7 C -0.09 -0.83 6.10 -29.04 -0.18 -1.01 16 8 C 0.52 7.16 7.76 -10.99 -0.09 7.07 16 9 O -0.53 -9.70 15.34 5.55 0.09 -9.61 16 10 N -0.72 -9.48 5.50 -60.29 -0.33 -9.81 16 11 C 0.13 2.08 5.35 -4.04 -0.02 2.06 16 12 C 0.07 1.15 2.81 -26.58 -0.07 1.08 16 13 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 14 C 0.10 2.20 3.67 -3.53 -0.01 2.18 16 15 N -0.61 -14.25 2.84 -171.82 -0.49 -14.74 16 16 C -0.26 -7.26 10.10 -15.06 -0.15 -7.41 16 17 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 18 C 0.02 0.71 5.26 -17.43 -0.09 0.62 16 19 N -0.91 -27.49 13.97 55.49 0.78 -26.71 16 20 Si 0.88 22.39 24.28 -169.99 -4.13 18.27 16 21 H -0.29 -6.98 6.58 56.52 0.37 -6.61 16 22 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 23 H -0.27 -6.80 6.54 56.52 0.37 -6.43 16 24 C 0.11 2.14 6.73 -3.53 -0.02 2.12 16 25 C 0.05 0.76 6.99 37.31 0.26 1.02 16 26 O -0.39 -6.49 10.33 -35.23 -0.36 -6.85 16 27 N -0.42 -5.70 9.23 -9.35 -0.09 -5.78 16 28 C 0.03 0.30 10.22 -17.37 -0.18 0.12 16 29 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.27 7.68 -51.93 -0.40 -0.13 16 31 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 0.81 7.94 -52.49 -0.42 0.40 16 34 H 0.11 0.67 7.87 -51.93 -0.41 0.26 16 35 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.40 4.22 8.47 -40.82 -0.35 3.88 16 37 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 39 H 0.04 0.83 6.86 -51.93 -0.36 0.47 16 40 H 0.08 1.94 4.61 -51.93 -0.24 1.70 16 41 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 42 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.16 1.43 6.32 -52.49 -0.33 1.10 16 LS Contribution 374.28 15.07 5.64 5.64 Total: -1.00 -36.32 374.28 -6.91 -43.24 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.73 Total: 2.15 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -1.08 Total: 7.28 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.13 Total: -57.05 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.48 Total: -19.53 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.13 Total: 18.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.32 -6.91 -43.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753653153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.879 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds