Wall clock time and date at job start Tue Mar 31 2020 18:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00048 * 2 1 4 4 O 1.21281 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47113 * 180.02562 * 6 5 3 8 8 C 1.34511 * 125.78903 * 89.99963 * 7 6 5 9 9 C 1.41387 * 106.83843 * 180.02562 * 8 7 6 10 10 C 1.34508 * 106.84111 * 359.97438 * 9 8 7 11 11 O 1.34305 * 108.42352 * 359.74376 * 10 9 8 12 12 C 1.46499 * 119.99966 * 179.97438 * 2 1 3 13 13 C 1.53932 * 113.73412 * 323.27001 * 12 2 1 14 14 N 1.47959 * 86.18045 * 90.64001 * 13 12 2 15 15 C 1.46902 * 110.99905 * 137.58303 * 14 13 12 16 16 C 1.50699 * 109.47319 * 70.64321 * 15 14 13 17 17 O 1.21291 * 119.99712 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00368 * 179.97438 * 16 15 14 19 19 C 1.37087 * 120.00565 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99891 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00760 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99436 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00409 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47428 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46916 * 120.00262 * 23 21 19 26 26 H 1.48502 * 109.47067 * 239.99608 * 23 21 19 27 27 C 1.47957 * 90.76368 * 24.69138 * 14 13 12 28 28 H 1.09005 * 109.47173 * 270.00035 * 1 2 3 29 29 H 1.09001 * 109.47588 * 30.00029 * 1 2 3 30 30 H 1.09005 * 109.47125 * 150.00533 * 1 2 3 31 31 H 1.09000 * 109.46884 * 300.00687 * 5 3 2 32 32 H 1.09003 * 109.47210 * 60.00112 * 5 3 2 33 33 H 1.09003 * 109.46891 * 299.99923 * 6 5 3 34 34 H 1.08998 * 109.47097 * 60.00220 * 6 5 3 35 35 H 1.08001 * 126.58247 * 359.96371 * 8 7 6 36 36 H 1.08003 * 126.57875 * 179.97438 * 9 8 7 37 37 H 1.08004 * 125.79269 * 179.97438 * 10 9 8 38 38 H 1.09000 * 113.00735 * 191.63827 * 12 2 1 39 39 H 1.09004 * 113.75969 * 204.95796 * 13 12 2 40 40 H 1.08999 * 113.76302 * 336.32252 * 13 12 2 41 41 H 1.09007 * 109.46697 * 190.64055 * 15 14 13 42 42 H 1.09001 * 109.46915 * 310.63777 * 15 14 13 43 43 H 0.97011 * 119.99660 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99535 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.75975 * 220.99328 * 27 14 13 46 46 H 1.08998 * 113.76273 * 89.62912 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9403 -0.0011 8 6 1.2330 5.6217 1.0901 9 6 0.5637 6.7794 0.6310 10 6 0.5882 6.7364 -0.7132 11 8 1.2382 5.6233 -1.0905 12 6 2.1975 -1.2687 0.0006 13 6 1.5292 -2.3696 0.8438 14 7 0.8196 -2.7514 -0.3971 15 6 0.7813 -4.2116 -0.5536 16 6 -0.1521 -4.8024 0.4716 17 8 -0.7283 -4.0783 1.2557 18 7 -0.3465 -6.1352 0.5171 19 6 -1.1951 -6.6728 1.4499 20 1 -1.7083 -6.0281 2.1482 21 6 -1.3961 -8.0469 1.4966 22 7 -0.7721 -8.8313 0.6466 23 14 -2.5530 -8.7791 2.7673 24 1 -3.1270 -7.6913 3.5993 25 1 -3.6495 -9.5056 2.0779 26 1 -1.8026 -9.7228 3.6343 27 6 1.8971 -2.1582 -1.2194 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 0.7590 2.5298 -0.8908 32 1 0.7584 2.5303 0.8892 33 1 3.0062 3.5779 0.8889 34 1 3.0062 3.5771 -0.8911 35 1 1.3965 5.3383 2.1194 36 1 0.1182 7.5503 1.2423 37 1 0.1613 7.4740 -1.3766 38 1 3.2615 -1.1463 0.2029 39 1 2.2232 -3.1289 1.2042 40 1 0.8726 -1.9867 1.6251 41 1 0.4269 -4.4606 -1.5539 42 1 1.7823 -4.6186 -0.4109 43 1 0.1141 -6.7143 -0.1103 44 1 -0.9126 -9.7905 0.6789 45 1 1.5344 -1.6063 -2.0866 46 1 2.6987 -2.8556 -1.4624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754569788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:46 Heat of formation + Delta-G solvation = -9.947047 kcal Electronic energy + Delta-G solvation = -27979.860809 eV Core-core repulsion = 23872.975739 eV Total energy + Delta-G solvation = -4106.885070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.84355 -40.78020 -39.18214 -37.71075 -34.86790 -34.35392 -33.89530 -33.06562 -31.31576 -30.21970 -28.94998 -27.02133 -26.08126 -25.62052 -24.74541 -23.24736 -22.03784 -20.85869 -20.26547 -19.30390 -18.62621 -17.99776 -17.80575 -17.02772 -16.50140 -16.26589 -16.10262 -15.85471 -15.35219 -14.97838 -14.63513 -14.60158 -14.21232 -13.79689 -13.71584 -13.33817 -13.11725 -13.07988 -12.98879 -12.78982 -12.59433 -12.40093 -12.34374 -12.02031 -11.95015 -11.58559 -11.52939 -11.37681 -11.12778 -10.93649 -10.79137 -10.37025 -10.25060 -10.21912 -9.94739 -9.54503 -8.75379 -8.74297 -8.63346 -8.26785 -7.99513 -6.44823 -3.85704 1.42142 2.31420 2.46497 2.64555 2.92427 3.13820 3.24708 3.31588 3.85592 3.96284 4.18145 4.22050 4.51224 4.57748 4.65768 4.69318 4.75447 4.85268 4.90575 4.99512 5.11044 5.19487 5.30059 5.38708 5.40554 5.47070 5.52739 5.61052 5.63660 5.66202 5.69197 5.70575 5.76503 5.83169 5.86264 6.10000 6.11667 6.21254 6.21766 6.51918 6.56593 6.85218 7.09758 7.33736 7.52296 8.02482 8.03099 8.57750 9.14820 9.50911 10.02110 10.72921 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.001806 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.789098 B =15500.677836 C =16138.647205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.587 5.587 3 C 0.516 3.484 4 O -0.547 6.547 5 C -0.135 4.135 6 C -0.024 4.024 7 C -0.008 4.008 8 C -0.210 4.210 9 C -0.213 4.213 10 C -0.045 4.045 11 O -0.176 6.176 12 C 0.110 3.890 13 C 0.014 3.986 14 N -0.452 5.452 15 C 0.009 3.991 16 C 0.444 3.556 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C -0.012 4.012 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.201 0.799 38 H 0.108 0.892 39 H 0.077 0.923 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.090 0.910 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 24.479 -4.445 25.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C 0.304 3.696 4 O -0.425 6.425 5 C -0.175 4.175 6 C -0.062 4.062 7 C -0.058 4.058 8 C -0.229 4.229 9 C -0.233 4.233 10 C -0.113 4.113 11 O -0.072 6.072 12 C 0.005 3.995 13 C -0.115 4.115 14 N -0.175 5.175 15 C -0.123 4.123 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.143 4.143 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.218 0.782 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.116 0.884 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.108 0.892 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.987 24.831 -4.325 25.693 hybrid contribution 0.181 -1.204 0.458 1.301 sum 5.168 23.627 -3.867 24.493 Atomic orbital electron populations 1.22044 0.78115 1.04442 1.02731 1.47474 1.07621 1.04599 1.72150 1.20570 0.87898 0.85280 0.75820 1.90691 1.13942 1.87505 1.50389 1.21686 0.99183 0.91351 1.05253 1.19857 0.95559 0.85044 1.05728 1.22471 1.02694 0.96482 0.84195 1.21646 1.04929 0.96755 0.99607 1.21854 1.05763 1.00782 0.94859 1.24034 1.00989 0.90093 0.96172 1.84033 1.57499 1.30527 1.35171 1.22487 0.97189 0.83288 0.96536 1.24169 0.96521 0.95598 0.95257 1.68398 1.35762 1.09568 1.03746 1.22473 0.99173 0.89971 1.00708 1.19674 0.86751 0.83107 0.87577 1.90513 1.52395 1.59748 1.43770 1.41882 1.41027 1.05155 1.32015 1.19739 1.20781 0.90900 1.11385 0.87883 1.25268 0.98365 0.96092 0.98251 1.69625 1.42898 1.05060 1.36675 0.85803 0.79565 0.78950 0.80041 1.19235 1.20741 1.20764 1.24476 0.94562 0.97347 0.97883 0.92377 0.91806 0.87627 0.88369 0.88226 0.87991 0.89231 0.83409 0.83503 0.78184 0.87422 0.90467 0.88357 0.89147 0.92653 0.77505 0.91914 0.89204 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.74 9.19 59.85 0.55 1.29 16 2 N -0.59 -6.93 3.09 -175.28 -0.54 -7.47 16 3 C 0.52 6.03 7.67 -10.98 -0.08 5.95 16 4 O -0.55 -8.04 15.47 5.56 0.09 -7.95 16 5 C -0.13 -1.15 4.23 -27.88 -0.12 -1.26 16 6 C -0.02 -0.21 5.04 -27.89 -0.14 -0.35 16 7 C -0.01 -0.08 6.57 -35.63 -0.23 -0.31 16 8 C -0.21 -1.81 10.81 -39.70 -0.43 -2.24 16 9 C -0.21 -1.65 10.91 -39.70 -0.43 -2.08 16 10 C -0.05 -0.34 12.09 29.41 0.36 0.02 16 11 O -0.18 -1.70 10.65 5.69 0.06 -1.64 16 12 C 0.11 1.39 4.51 -69.63 -0.31 1.08 16 13 C 0.01 0.21 5.99 -2.77 -0.02 0.19 16 14 N -0.45 -6.91 4.08 -239.91 -0.98 -7.89 16 15 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 16 C 0.44 10.13 7.59 -10.99 -0.08 10.05 16 17 O -0.58 -15.09 15.12 5.55 0.08 -15.00 16 18 N -0.56 -14.02 5.29 -10.97 -0.06 -14.08 16 19 C -0.30 -8.20 9.68 -14.94 -0.14 -8.35 16 20 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 22 N -0.90 -24.29 13.05 55.50 0.72 -23.56 16 23 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 24 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 C -0.01 -0.15 7.45 -2.77 -0.02 -0.17 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.52 6.44 -51.93 -0.33 0.19 16 30 H 0.11 1.36 6.07 -51.93 -0.32 1.05 16 31 H 0.10 0.74 7.40 -51.93 -0.38 0.36 16 32 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 33 H 0.10 0.87 8.10 -51.93 -0.42 0.45 16 34 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 35 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.20 0.74 8.06 -52.48 -0.42 0.31 16 38 H 0.11 1.39 7.25 -51.93 -0.38 1.01 16 39 H 0.08 1.14 7.78 -51.93 -0.40 0.73 16 40 H 0.10 1.63 7.77 -51.93 -0.40 1.23 16 41 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.06 0.84 7.69 -51.93 -0.40 0.45 16 43 H 0.39 9.35 7.90 -40.82 -0.32 9.02 16 44 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -33.09 384.63 -7.74 -40.83 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.65 Total: 10.74 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.24 Total: 4.41 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.85 Total: -53.00 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.23 Total: -24.59 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.09 -7.74 -40.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754569788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.881 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds