Wall clock time and date at job start Tue Mar 31 2020 18:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34776 * 120.00048 * 2 1 4 4 O 1.21281 * 120.00060 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00053 * 359.97438 * 3 2 1 6 6 C 1.52995 * 109.47385 * 180.02562 * 5 3 2 7 7 C 1.50700 * 109.47113 * 180.02562 * 6 5 3 8 8 C 1.34511 * 125.78903 * 89.99963 * 7 6 5 9 9 C 1.41387 * 106.83843 * 180.02562 * 8 7 6 10 10 C 1.34508 * 106.84111 * 359.97438 * 9 8 7 11 11 O 1.34305 * 108.42352 * 359.74376 * 10 9 8 12 12 C 1.46499 * 119.99966 * 179.97438 * 2 1 3 13 13 C 1.53932 * 113.73412 * 323.27001 * 12 2 1 14 14 N 1.47959 * 86.18045 * 90.64001 * 13 12 2 15 15 C 1.46902 * 110.99905 * 137.58303 * 14 13 12 16 16 C 1.50699 * 109.47319 * 70.64321 * 15 14 13 17 17 O 1.21291 * 119.99712 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00368 * 179.97438 * 16 15 14 19 19 C 1.37087 * 120.00565 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99891 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00760 * 179.97438 * 19 18 16 22 22 N 1.31419 * 119.99436 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00409 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47428 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46916 * 120.00262 * 23 21 19 26 26 H 1.48502 * 109.47067 * 239.99608 * 23 21 19 27 27 C 1.47957 * 90.76368 * 24.69138 * 14 13 12 28 28 H 1.09005 * 109.47173 * 270.00035 * 1 2 3 29 29 H 1.09001 * 109.47588 * 30.00029 * 1 2 3 30 30 H 1.09005 * 109.47125 * 150.00533 * 1 2 3 31 31 H 1.09000 * 109.46884 * 300.00687 * 5 3 2 32 32 H 1.09003 * 109.47210 * 60.00112 * 5 3 2 33 33 H 1.09003 * 109.46891 * 299.99923 * 6 5 3 34 34 H 1.08998 * 109.47097 * 60.00220 * 6 5 3 35 35 H 1.08001 * 126.58247 * 359.96371 * 8 7 6 36 36 H 1.08003 * 126.57875 * 179.97438 * 9 8 7 37 37 H 1.08004 * 125.79269 * 179.97438 * 10 9 8 38 38 H 1.09000 * 113.00735 * 191.63827 * 12 2 1 39 39 H 1.09004 * 113.75969 * 204.95796 * 13 12 2 40 40 H 1.08999 * 113.76302 * 336.32252 * 13 12 2 41 41 H 1.09007 * 109.46697 * 190.64055 * 15 14 13 42 42 H 1.09001 * 109.46915 * 310.63777 * 15 14 13 43 43 H 0.97011 * 119.99660 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99535 * 180.02562 * 22 21 19 45 45 H 1.09000 * 113.75975 * 220.99328 * 27 14 13 46 46 H 1.08998 * 113.76273 * 89.62912 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3795 3.6352 -0.0011 7 6 1.6260 4.9403 -0.0011 8 6 1.2330 5.6217 1.0901 9 6 0.5637 6.7794 0.6310 10 6 0.5882 6.7364 -0.7132 11 8 1.2382 5.6233 -1.0905 12 6 2.1975 -1.2687 0.0006 13 6 1.5292 -2.3696 0.8438 14 7 0.8196 -2.7514 -0.3971 15 6 0.7813 -4.2116 -0.5536 16 6 -0.1521 -4.8024 0.4716 17 8 -0.7283 -4.0783 1.2557 18 7 -0.3465 -6.1352 0.5171 19 6 -1.1951 -6.6728 1.4499 20 1 -1.7083 -6.0281 2.1482 21 6 -1.3961 -8.0469 1.4966 22 7 -0.7721 -8.8313 0.6466 23 14 -2.5530 -8.7791 2.7673 24 1 -3.1270 -7.6913 3.5993 25 1 -3.6495 -9.5056 2.0779 26 1 -1.8026 -9.7228 3.6343 27 6 1.8971 -2.1582 -1.2194 28 1 -0.3634 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 0.7590 2.5298 -0.8908 32 1 0.7584 2.5303 0.8892 33 1 3.0062 3.5779 0.8889 34 1 3.0062 3.5771 -0.8911 35 1 1.3965 5.3383 2.1194 36 1 0.1182 7.5503 1.2423 37 1 0.1613 7.4740 -1.3766 38 1 3.2615 -1.1463 0.2029 39 1 2.2232 -3.1289 1.2042 40 1 0.8726 -1.9867 1.6251 41 1 0.4269 -4.4606 -1.5539 42 1 1.7823 -4.6186 -0.4109 43 1 0.1141 -6.7143 -0.1103 44 1 -0.9126 -9.7905 0.6789 45 1 1.5344 -1.6063 -2.0866 46 1 2.6987 -2.8556 -1.4624 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754569788.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:28:45 Heat of formation + Delta-G solvation = -32.604771 kcal Electronic energy + Delta-G solvation = -27980.843322 eV Core-core repulsion = 23872.975739 eV Total energy + Delta-G solvation = -4107.867583 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45366 -41.86418 -40.39782 -39.36351 -36.06956 -35.73126 -35.05764 -33.68112 -33.28553 -31.46167 -29.71510 -28.07248 -27.32705 -26.94288 -25.86873 -24.52233 -22.63652 -21.66680 -21.10411 -21.00786 -19.92029 -19.58869 -18.62628 -17.89794 -17.79221 -17.33241 -17.02364 -16.82804 -16.65672 -16.35338 -16.26641 -15.57977 -15.34182 -15.24462 -14.88264 -14.71104 -14.16479 -13.91336 -13.71106 -13.70272 -13.52767 -13.47304 -13.34904 -13.24899 -13.07278 -13.00793 -12.80787 -12.69625 -12.41252 -12.14906 -12.13409 -12.04133 -11.92543 -11.49948 -10.94535 -10.80570 -10.31561 -10.00740 -9.73245 -9.62390 -9.35290 -8.46844 -5.95103 0.81138 1.36001 1.41444 1.54553 1.55253 1.71233 1.90596 2.06043 2.19469 2.28351 2.79423 3.20146 3.27033 3.43979 3.56335 3.79052 3.90227 4.00277 4.06911 4.18723 4.22477 4.27328 4.33904 4.35568 4.45431 4.47492 4.55493 4.60112 4.62453 4.70897 4.75920 4.83890 4.91615 4.96697 5.00463 5.10030 5.18035 5.28127 5.32483 5.41423 5.55770 5.64834 5.84582 6.05150 6.24974 6.40801 6.60251 7.10170 7.13205 7.56937 8.12273 8.70773 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025663 B = 0.001806 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.789098 B =15500.677836 C =16138.647205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.589 5.589 3 C 0.515 3.485 4 O -0.579 6.579 5 C -0.125 4.125 6 C -0.018 4.018 7 C -0.025 4.025 8 C -0.219 4.219 9 C -0.228 4.228 10 C -0.045 4.045 11 O -0.194 6.194 12 C 0.118 3.882 13 C 0.011 3.989 14 N -0.466 5.466 15 C 0.021 3.979 16 C 0.442 3.558 17 O -0.616 6.616 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.000 4.000 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.165 0.835 37 H 0.234 0.766 38 H 0.107 0.893 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.101 0.899 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.203 25.454 -5.243 26.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.320 5.320 3 C 0.306 3.694 4 O -0.460 6.460 5 C -0.165 4.165 6 C -0.056 4.056 7 C -0.075 4.075 8 C -0.238 4.238 9 C -0.247 4.247 10 C -0.111 4.111 11 O -0.090 6.090 12 C 0.012 3.988 13 C -0.118 4.118 14 N -0.190 5.190 15 C -0.111 4.111 16 C 0.230 3.770 17 O -0.501 6.501 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.129 4.129 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.251 0.749 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.127 0.873 42 H 0.096 0.904 43 H 0.229 0.771 44 H 0.086 0.914 45 H 0.119 0.881 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.789 25.806 -5.144 26.746 hybrid contribution 0.249 -1.406 0.710 1.595 sum 5.038 24.400 -4.434 25.306 Atomic orbital electron populations 1.22028 0.77416 1.04929 1.02498 1.47569 1.08022 1.04455 1.71925 1.21076 0.87612 0.85992 0.74746 1.90677 1.15454 1.87957 1.51888 1.21668 0.98958 0.89281 1.06561 1.19749 0.95430 0.85197 1.05188 1.22501 1.03663 0.96897 0.84413 1.21929 1.04716 0.97103 1.00021 1.22181 1.06033 1.01065 0.95427 1.24766 0.99826 0.89677 0.96878 1.84022 1.58039 1.31362 1.35617 1.22361 0.96954 0.83345 0.96137 1.24102 0.96200 0.96632 0.94899 1.68428 1.37589 1.08323 1.04611 1.22380 0.98562 0.90903 0.99236 1.20718 0.86341 0.82259 0.87707 1.90488 1.53805 1.60426 1.45428 1.41955 1.41268 1.06072 1.32017 1.19674 1.22383 0.91438 1.12486 0.90332 1.26021 0.99502 0.95923 0.99904 1.69682 1.43518 1.05481 1.37516 0.84887 0.77841 0.77952 0.77760 1.19799 1.19682 1.19708 1.24513 0.93892 0.96981 0.97506 0.93003 0.88821 0.89550 0.86897 0.86808 0.88258 0.90117 0.82535 0.81697 0.74934 0.87492 0.90589 0.90809 0.87251 0.90392 0.77082 0.91377 0.88090 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.50 9.19 127.77 1.17 2.68 16 2 N -0.59 -13.31 3.09 -826.85 -2.56 -15.86 16 3 C 0.52 11.54 7.67 87.66 0.67 12.21 16 4 O -0.58 -16.74 15.47 -3.03 -0.05 -16.79 16 5 C -0.13 -1.94 4.23 29.85 0.13 -1.82 16 6 C -0.02 -0.30 5.04 29.85 0.15 -0.15 16 7 C -0.03 -0.44 6.57 24.83 0.16 -0.27 16 8 C -0.22 -3.52 10.81 22.19 0.24 -3.28 16 9 C -0.23 -3.13 10.91 22.19 0.24 -2.89 16 10 C -0.04 -0.57 12.09 66.97 0.81 0.24 16 11 O -0.19 -3.49 10.65 -2.54 -0.03 -3.52 16 12 C 0.12 2.86 4.51 46.56 0.21 3.07 16 13 C 0.01 0.34 5.99 86.40 0.52 0.86 16 14 N -0.47 -13.80 4.08 -912.93 -3.72 -17.52 16 15 C 0.02 0.67 5.31 85.56 0.45 1.13 16 16 C 0.44 20.38 7.59 87.66 0.67 21.05 16 17 O -0.62 -32.84 15.12 -3.06 -0.05 -32.88 16 18 N -0.58 -29.02 5.29 -307.00 -1.62 -30.64 16 19 C -0.33 -18.54 9.68 84.04 0.81 -17.73 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 23 Si 0.99 42.69 29.55 68.60 2.03 44.72 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 C 0.00 0.01 7.45 86.41 0.64 0.65 16 28 H 0.05 1.12 8.14 -2.38 -0.02 1.11 16 29 H 0.09 1.33 6.44 -2.39 -0.02 1.31 16 30 H 0.09 2.17 6.07 -2.38 -0.01 2.15 16 31 H 0.11 1.45 7.40 -2.39 -0.02 1.43 16 32 H 0.11 1.47 8.11 -2.39 -0.02 1.46 16 33 H 0.10 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.08 1.47 8.10 -2.39 -0.02 1.45 16 35 H 0.16 2.09 8.06 -2.91 -0.02 2.06 16 36 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 38 H 0.11 2.67 7.25 -2.39 -0.02 2.65 16 39 H 0.08 2.24 7.78 -2.38 -0.02 2.22 16 40 H 0.07 2.54 7.77 -2.39 -0.02 2.52 16 41 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 42 H 0.08 2.22 7.69 -2.39 -0.02 2.20 16 43 H 0.40 18.98 7.90 -92.70 -0.73 18.25 16 44 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.10 1.82 7.79 -2.39 -0.02 1.80 16 Total: -1.00 -72.37 384.63 1.91 -70.45 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.27 Total: 35.62 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 7.35 Total: 15.49 kcal Atomic # 7 Polarization: -105.47 SS G_CDS: -7.62 Total: -113.09 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -0.12 Total: -53.19 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -72.37 1.91 -70.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754569788.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.850 kcal (2) G-P(sol) polarization free energy of solvation -72.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds