Wall clock time and date at job start Tue Mar 31 2020 18:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35699 * 119.44220 * 2 1 4 4 C 1.35260 * 121.00192 * 180.02562 * 3 2 1 5 5 C 1.41158 * 119.87050 * 359.97438 * 4 3 2 6 6 C 1.48454 * 120.53891 * 179.97438 * 5 4 3 7 7 O 1.21479 * 119.99725 * 179.97438 * 6 5 4 8 8 N 1.34767 * 120.00306 * 359.97438 * 6 5 4 9 9 C 1.46505 * 120.00273 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.46876 * 177.36355 * 9 8 6 11 11 N 1.46497 * 109.54692 * 54.87608 * 10 9 8 12 12 C 1.36932 * 120.00120 * 59.42959 * 11 10 9 13 13 H 1.07999 * 120.00142 * 4.91388 * 12 11 10 14 14 C 1.38811 * 120.00036 * 184.91356 * 12 11 10 15 15 N 1.31621 * 119.99983 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 119.99984 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.46767 * 90.00153 * 16 14 12 18 18 H 1.48501 * 109.47035 * 210.00166 * 16 14 12 19 19 H 1.48501 * 109.47013 * 330.00303 * 16 14 12 20 20 C 1.53181 * 109.61122 * 175.09757 * 10 9 8 21 21 C 1.53095 * 109.16084 * 176.88839 * 20 10 9 22 22 O 1.42897 * 109.41437 * 302.38680 * 21 20 10 23 23 C 1.42907 * 114.09527 * 61.16164 * 22 21 20 24 24 C 1.53089 * 109.41576 * 298.84014 * 23 22 21 25 25 C 1.38289 * 118.92002 * 0.24684 * 5 4 3 26 26 C 1.34599 * 119.43711 * 179.97438 * 2 1 3 27 27 O 1.22000 * 119.96673 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47051 * 89.99604 * 1 2 3 29 29 H 1.09003 * 109.47325 * 210.00013 * 1 2 3 30 30 H 1.08999 * 109.47399 * 330.00286 * 1 2 3 31 31 H 1.07997 * 119.49961 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.06846 * 179.97438 * 4 3 2 33 33 H 0.97005 * 120.00287 * 359.97438 * 8 6 5 34 34 H 1.08992 * 109.47415 * 57.36015 * 9 8 6 35 35 H 1.08997 * 109.46552 * 297.36161 * 9 8 6 36 36 H 0.96998 * 119.99656 * 239.43118 * 11 10 9 37 37 H 0.97003 * 119.99809 * 179.97438 * 15 14 12 38 38 H 1.08999 * 109.52295 * 296.79001 * 20 10 9 39 39 H 1.08996 * 109.52451 * 56.98027 * 20 10 9 40 40 H 1.09000 * 109.47887 * 182.40965 * 21 20 10 41 41 H 1.09003 * 109.49120 * 62.37960 * 21 20 10 42 42 H 1.09008 * 109.47897 * 178.85545 * 23 22 21 43 43 H 1.09001 * 109.48873 * 58.82830 * 23 22 21 44 44 H 1.09003 * 109.52123 * 297.70545 * 24 23 22 45 45 H 1.08996 * 109.57383 * 177.54897 * 24 23 22 46 46 H 1.08003 * 120.49681 * 179.74731 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4841 1.2186 -0.0005 5 6 4.2202 0.0141 -0.0005 6 6 5.7045 0.0372 -0.0017 7 8 6.3282 -1.0053 -0.0012 8 7 6.3602 1.2146 -0.0032 9 6 7.8251 1.2374 -0.0049 10 6 8.3125 2.6861 -0.0728 11 7 7.7162 3.4557 1.0219 12 6 7.9383 3.0835 2.3208 13 1 8.6160 2.2722 2.5417 14 6 7.2924 3.7491 3.3536 15 7 7.5055 3.3910 4.6021 16 14 6.1207 5.1529 2.9715 17 1 4.7477 4.6164 2.7912 18 1 6.1291 6.1242 4.0948 19 1 6.5538 5.8338 1.7249 20 6 9.8391 2.7212 0.0483 21 6 10.3218 4.1666 -0.0987 22 8 9.8816 4.6890 -1.3538 23 6 8.4610 4.7249 -1.5049 24 6 7.9035 3.3020 -1.4144 25 6 3.5361 -1.1877 -0.0052 26 6 2.1265 -1.1722 0.0005 27 8 1.5055 -2.2224 0.0005 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.5748 2.1069 -0.0004 32 1 3.9996 2.1676 -0.0009 33 1 5.8622 2.0471 -0.0040 34 1 8.1960 0.6883 -0.8702 35 1 8.1966 0.7714 0.9077 36 1 7.1640 4.2289 0.8265 37 1 7.0544 3.8563 5.3239 38 1 10.1360 2.3354 1.0236 39 1 10.2810 2.1079 -0.7369 40 1 11.4106 4.1923 -0.0561 41 1 9.9119 4.7710 0.7106 42 1 8.2093 5.1528 -2.4754 43 1 8.0265 5.3365 -0.7142 44 1 8.3064 2.7004 -2.2292 45 1 6.8163 3.3305 -1.4857 46 1 4.0737 -2.1244 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754737203.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:54 Heat of formation + Delta-G solvation = -59.634647 kcal Electronic energy + Delta-G solvation = -29986.948088 eV Core-core repulsion = 25877.908401 eV Total energy + Delta-G solvation = -4109.039686 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47037 -39.87251 -38.93552 -37.00026 -36.05547 -34.58887 -33.61965 -32.27685 -30.82716 -30.05878 -29.94083 -28.48658 -26.87990 -24.40606 -23.89192 -23.50669 -23.03899 -22.02395 -20.26135 -18.80129 -18.08919 -17.95446 -17.55218 -17.02048 -16.25400 -15.90815 -15.71999 -15.65379 -15.42852 -15.01629 -14.60138 -14.54121 -14.29079 -14.20722 -13.63427 -13.45071 -13.28945 -13.13064 -12.87109 -12.81918 -12.49455 -12.40586 -12.05931 -11.96333 -11.86779 -11.60584 -11.13507 -11.07431 -10.98350 -10.50418 -10.40309 -10.17638 -10.15680 -9.95263 -9.74965 -9.70311 -9.29686 -8.98328 -8.64535 -8.14837 -7.49717 -5.91363 -3.30884 0.38294 1.54065 2.42136 2.94841 3.18447 3.18588 3.29992 3.34868 3.72838 4.19835 4.31167 4.41149 4.42661 4.69233 4.88871 4.90412 4.94102 4.98343 5.02236 5.09846 5.17284 5.27858 5.31070 5.37572 5.49403 5.55419 5.63280 5.80249 5.85162 5.89812 5.93907 6.05300 6.08948 6.11368 6.19909 6.24382 6.37468 6.45314 6.55749 6.62211 6.79672 6.82571 7.53562 7.76912 7.80941 7.82738 8.25764 8.42547 9.01221 9.72655 9.90289 11.26191 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011849 B = 0.003841 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.450168 B = 7287.495504 C = 8213.350744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.497 5.497 3 C 0.127 3.873 4 C -0.207 4.207 5 C -0.024 4.024 6 C 0.548 3.452 7 O -0.536 6.536 8 N -0.689 5.689 9 C 0.119 3.881 10 C 0.195 3.805 11 N -0.740 5.740 12 C -0.244 4.244 13 H 0.093 0.907 14 C 0.012 3.988 15 N -0.926 5.926 16 Si 0.878 3.122 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.279 1.279 20 C -0.154 4.154 21 C 0.069 3.931 22 O -0.391 6.391 23 C 0.065 3.935 24 C -0.156 4.156 25 C -0.175 4.175 26 C 0.513 3.487 27 O -0.548 6.548 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.149 0.851 33 H 0.400 0.600 34 H 0.060 0.940 35 H 0.076 0.924 36 H 0.361 0.639 37 H 0.260 0.740 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.929 1.900 -13.045 15.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.209 5.209 3 C 0.001 3.999 4 C -0.231 4.231 5 C -0.031 4.031 6 C 0.333 3.667 7 O -0.414 6.414 8 N -0.339 5.339 9 C -0.007 4.007 10 C 0.104 3.896 11 N -0.384 5.384 12 C -0.373 4.373 13 H 0.111 0.889 14 C -0.184 4.184 15 N -0.573 5.573 16 Si 0.708 3.292 17 H -0.211 1.211 18 H -0.218 1.218 19 H -0.205 1.205 20 C -0.194 4.194 21 C -0.007 4.007 22 O -0.310 6.310 23 C -0.012 4.012 24 C -0.194 4.194 25 C -0.198 4.198 26 C 0.315 3.685 27 O -0.431 6.431 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.236 0.764 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.195 0.805 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.704 0.453 -12.942 15.603 hybrid contribution -1.277 1.558 0.356 2.046 sum -9.981 2.011 -12.586 16.189 Atomic orbital electron populations 1.22176 0.77131 1.05113 1.03873 1.45362 1.09390 1.06807 1.59348 1.21800 0.93545 0.89348 0.95209 1.20723 0.92608 0.98752 1.10971 1.20590 0.94186 0.93750 0.94578 1.18202 0.86459 0.84317 0.77689 1.90755 1.68387 1.32279 1.49947 1.45623 1.08157 1.07738 1.72403 1.21846 0.78671 0.98333 1.01803 1.19799 0.92525 0.89830 0.87466 1.42902 1.60498 1.32478 1.02494 1.18906 1.22496 1.15421 0.80509 0.88946 1.24658 0.99614 0.99030 0.95106 1.69687 1.46351 1.43188 0.98054 0.86689 0.81946 0.83329 0.77232 1.21061 1.21781 1.20501 1.22459 0.96596 0.97558 1.02766 1.22480 0.98579 0.94010 0.85679 1.87828 1.21205 1.84414 1.37522 1.22457 0.81970 0.95636 1.01110 1.22423 1.01013 0.97951 0.98011 1.22700 0.92045 0.99772 1.05327 1.17091 0.88928 0.82825 0.79701 1.90946 1.69400 1.29738 1.52993 0.90545 0.88720 0.89556 0.81564 0.83369 0.76352 0.92163 0.90612 0.80470 0.92948 0.89835 0.92176 0.89921 0.91649 0.89766 0.93023 0.90549 0.91297 0.81983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.34 59.85 0.62 1.03 16 2 N -0.50 -5.26 2.98 -127.13 -0.38 -5.64 16 3 C 0.13 1.12 10.25 -16.90 -0.17 0.94 16 4 C -0.21 -2.28 9.51 -39.54 -0.38 -2.66 16 5 C -0.02 -0.35 5.91 -104.56 -0.62 -0.96 16 6 C 0.55 9.25 7.80 -12.05 -0.09 9.15 16 7 O -0.54 -10.77 16.39 5.38 0.09 -10.69 16 8 N -0.69 -10.79 5.09 -61.06 -0.31 -11.10 16 9 C 0.12 1.97 4.33 -4.04 -0.02 1.95 16 10 C 0.20 3.08 0.41 -131.64 -0.05 3.02 16 11 N -0.74 -13.99 3.46 -47.06 -0.16 -14.15 16 12 C -0.24 -5.84 9.18 -15.06 -0.14 -5.98 16 13 H 0.09 2.47 6.99 -52.49 -0.37 2.11 16 14 C 0.01 0.33 5.50 -17.43 -0.10 0.23 16 15 N -0.93 -26.95 13.97 55.49 0.78 -26.17 16 16 Si 0.88 19.42 27.78 -169.99 -4.72 14.70 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -5.66 6.45 56.52 0.36 -5.30 16 20 C -0.15 -2.41 4.83 -26.59 -0.13 -2.54 16 21 C 0.07 1.07 6.68 37.21 0.25 1.32 16 22 O -0.39 -6.02 10.77 -35.23 -0.38 -6.40 16 23 C 0.07 0.87 6.67 37.20 0.25 1.12 16 24 C -0.16 -2.01 4.80 -26.60 -0.13 -2.14 16 25 C -0.18 -2.63 9.61 -38.53 -0.37 -3.00 16 26 C 0.51 7.45 7.42 -15.31 -0.11 7.34 16 27 O -0.55 -9.52 16.61 4.92 0.08 -9.44 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.80 7.37 -51.93 -0.38 0.42 16 30 H 0.09 0.35 8.00 -51.93 -0.42 -0.06 16 31 H 0.17 0.76 8.02 -52.49 -0.42 0.34 16 32 H 0.15 1.41 6.50 -52.49 -0.34 1.07 16 33 H 0.40 5.64 5.51 -40.82 -0.22 5.41 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.08 1.49 7.53 -51.93 -0.39 1.10 16 36 H 0.36 6.73 4.55 -40.82 -0.19 6.55 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.08 1.46 7.14 -51.93 -0.37 1.09 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.16 7.75 -51.93 -0.40 0.76 16 42 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 43 H 0.05 0.75 7.08 -51.93 -0.37 0.38 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.78 7.35 -51.93 -0.38 0.40 16 46 H 0.16 2.55 7.69 -52.48 -0.40 2.15 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -33.57 369.61 -6.99 -40.56 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -6.36 Total: 13.92 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -1.19 Total: 8.83 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.08 Total: -57.07 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.21 Total: -26.52 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -4.72 Total: 14.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.57 -6.99 -40.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754737203.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.070 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds