Wall clock time and date at job start Tue Mar 31 2020 18:23:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.35580 * 118.80346 * 2 1
4 4 C 1.34864 * 121.79965 * 179.97438 * 3 2 1
5 5 C 1.41674 * 119.34111 * 0.25665 * 4 3 2
6 6 O 1.22083 * 121.07168 * 179.72164 * 5 4 3
7 7 C 1.47109 * 117.85674 * 359.49875 * 5 4 3
8 8 C 1.47284 * 120.87836 * 180.25861 * 7 5 4
9 9 O 1.21622 * 120.00096 * 0.25964 * 8 7 5
10 10 N 1.34778 * 119.99608 * 180.26544 * 8 7 5
11 11 C 1.46501 * 119.99606 * 179.97438 * 10 8 7
12 12 C 1.52996 * 109.47114 * 175.89892 * 11 10 8
13 13 N 1.46498 * 109.54377 * 305.05827 * 12 11 10
14 14 C 1.36935 * 120.00127 * 300.68970 * 13 12 11
15 15 H 1.08005 * 120.00119 * 354.08212 * 14 13 12
16 16 C 1.38818 * 120.00222 * 174.07713 * 14 13 12
17 17 N 1.31614 * 119.99662 * 0.02562 * 16 14 13
18 18 Si 1.86801 * 119.99873 * 180.02562 * 16 14 13
19 19 H 1.48498 * 109.47280 * 0.02562 * 18 16 14
20 20 H 1.48498 * 109.46849 * 120.00252 * 18 16 14
21 21 H 1.48507 * 109.46706 * 239.99813 * 18 16 14
22 22 C 1.53177 * 109.54545 * 184.88005 * 12 11 10
23 23 C 1.53107 * 109.15708 * 183.23915 * 22 12 11
24 24 O 1.42901 * 109.48558 * 57.47848 * 23 22 12
25 25 C 1.42905 * 114.09578 * 298.88457 * 24 23 22
26 26 C 1.53090 * 109.41252 * 61.16368 * 25 24 23
27 27 C 1.34345 * 118.80606 * 179.97438 * 2 1 3
28 28 H 1.08993 * 109.46680 * 90.00231 * 1 2 3
29 29 H 1.09000 * 109.46789 * 210.00169 * 1 2 3
30 30 H 1.08999 * 109.46787 * 330.00093 * 1 2 3
31 31 H 1.08002 * 119.10375 * 0.02562 * 3 2 1
32 32 H 1.08002 * 120.33129 * 179.97438 * 4 3 2
33 33 H 0.96994 * 120.00009 * 359.97438 * 10 8 7
34 34 H 1.09000 * 109.47684 * 295.89997 * 11 10 8
35 35 H 1.09005 * 109.47287 * 55.89914 * 11 10 8
36 36 H 0.97006 * 120.00437 * 120.69310 * 13 12 11
37 37 H 0.97002 * 119.99624 * 180.02562 * 17 16 14
38 38 H 1.08997 * 109.52332 * 303.05708 * 22 12 11
39 39 H 1.08998 * 109.52416 * 63.24698 * 22 12 11
40 40 H 1.08994 * 109.40736 * 297.49158 * 23 22 12
41 41 H 1.09005 * 109.49101 * 177.51040 * 23 22 12
42 42 H 1.08994 * 109.48362 * 301.17770 * 25 24 23
43 43 H 1.08998 * 109.49039 * 181.14464 * 25 24 23
44 44 H 1.09001 * 109.51944 * 182.48895 * 26 25 24
45 45 H 1.08995 * 109.58151 * 62.32797 * 26 25 24
46 46 H 1.08001 * 119.81161 * 0.02562 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1183 1.1881 0.0000
4 6 3.4651 1.2585 0.0005
5 6 4.2229 0.0615 -0.0045
6 8 5.4434 0.0885 -0.0092
7 6 3.4917 -1.2150 0.0014
8 6 4.2129 -2.4992 0.0024
9 8 5.4290 -2.5137 0.0032
10 7 3.5251 -3.6582 0.0024
11 6 4.2424 -4.9356 0.0028
12 6 3.2376 -6.0847 0.1058
13 7 2.3898 -5.8902 1.2847
14 6 2.9548 -5.8181 2.5300
15 1 4.0121 -5.9996 2.6546
16 6 2.1685 -5.5117 3.6322
17 7 0.8799 -5.2910 3.4804
18 14 2.9394 -5.4127 5.3308
19 1 4.3930 -5.6998 5.2323
20 1 2.7411 -4.0496 5.8857
21 1 2.2969 -6.4093 6.2248
22 6 3.9896 -7.4135 0.2291
23 6 2.9784 -8.5630 0.2500
24 8 2.1794 -8.5166 -0.9338
25 6 1.4169 -7.3164 -1.0764
26 6 2.3653 -6.1171 -1.1530
27 6 2.1124 -1.1772 0.0005
28 1 -0.3632 0.0000 -1.0276
29 1 -0.3633 -0.8900 0.5139
30 1 -0.3633 0.8900 0.5138
31 1 1.5445 2.1030 0.0004
32 1 3.9610 2.2180 0.0001
33 1 2.5552 -3.6466 0.0020
34 1 4.8120 -5.0328 -0.9214
35 1 4.9224 -4.9702 0.8540
36 1 1.4282 -5.8126 1.1832
37 1 0.3306 -5.0765 4.2505
38 1 4.6584 -7.5339 -0.6231
39 1 4.5693 -7.4197 1.1521
40 1 2.3369 -8.4651 1.1257
41 1 3.5096 -9.5139 0.2931
42 1 0.7549 -7.2022 -0.2181
43 1 0.8232 -7.3690 -1.9890
44 1 1.7845 -5.1970 -1.2173
45 1 3.0004 -6.2093 -2.0339
46 1 1.5500 -2.0992 0.0005
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001754738842.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:23:03
Heat of formation + Delta-G solvation = -60.330993 kcal
Electronic energy + Delta-G solvation = -30282.469740 eV
Core-core repulsion = 26173.399857 eV
Total energy + Delta-G solvation = -4109.069882 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.98947 -39.53870 -38.50271 -37.52230 -35.71621 -33.45412 -32.60185 -32.37902
-31.51467 -30.68659 -29.19904 -27.33630 -26.60141 -24.59694 -24.08296 -23.08541
-22.76736 -21.90042 -20.21844 -18.73550 -17.99400 -17.41259 -17.21394 -16.69092
-15.88104 -15.83560 -15.59586 -15.50960 -15.08453 -14.67059 -14.46730 -14.36248
-14.33924 -13.85425 -13.65307 -13.46546 -13.28638 -13.15370 -12.74467 -12.65957
-12.37626 -12.18723 -12.07208 -11.99335 -11.74119 -11.38873 -10.94535 -10.92419
-10.82401 -10.32917 -10.05148 -9.83781 -9.74144 -9.71325 -9.59919 -9.14680
-8.97381 -8.82293 -8.35587 -7.88406 -7.12852 -5.91275 -3.20187 0.94745
1.34131 2.33136 3.35993 3.36718 3.44855 3.47426 3.72331 4.12225
4.15325 4.33396 4.37906 4.49984 4.60688 4.77385 4.87417 5.06694
5.13974 5.15950 5.23785 5.31012 5.44463 5.52565 5.52846 5.61472
5.63362 5.73505 5.75707 5.96261 6.05728 6.09863 6.21213 6.28937
6.37405 6.40469 6.52352 6.54969 6.59280 6.72325 6.74000 6.78076
7.14084 7.64471 7.67301 8.17232 8.26592 8.30126 8.92229 9.40239
9.89314 10.26407 11.30681
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.009783 B = 0.004344 C = 0.003834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2861.290352 B = 6444.599958 C = 7300.629251
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.054 3.946
2 N -0.475 5.475
3 C 0.127 3.873
4 C -0.272 4.272
5 C 0.406 3.594
6 O -0.483 6.483
7 C -0.291 4.291
8 C 0.569 3.431
9 O -0.526 6.526
10 N -0.705 5.705
11 C 0.123 3.877
12 C 0.188 3.812
13 N -0.712 5.712
14 C -0.229 4.229
15 H 0.071 0.929
16 C -0.007 4.007
17 N -0.933 5.933
18 Si 0.900 3.100
19 H -0.280 1.280
20 H -0.293 1.293
21 H -0.292 1.292
22 C -0.155 4.155
23 C 0.070 3.930
24 O -0.393 6.393
25 C 0.066 3.934
26 C -0.150 4.150
27 C 0.173 3.827
28 H 0.080 0.920
29 H 0.096 0.904
30 H 0.090 0.910
31 H 0.162 0.838
32 H 0.151 0.849
33 H 0.392 0.608
34 H 0.051 0.949
35 H 0.068 0.932
36 H 0.383 0.617
37 H 0.253 0.747
38 H 0.056 0.944
39 H 0.077 0.923
40 H 0.067 0.933
41 H 0.079 0.921
42 H 0.058 0.942
43 H 0.081 0.919
44 H 0.066 0.934
45 H 0.071 0.929
46 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.826 8.058 -10.472 15.357
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 N -0.162 5.162
3 C 0.002 3.998
4 C -0.296 4.296
5 C 0.291 3.709
6 O -0.364 6.364
7 C -0.301 4.301
8 C 0.355 3.645
9 O -0.403 6.403
10 N -0.356 5.356
11 C -0.003 4.003
12 C 0.096 3.904
13 N -0.354 5.354
14 C -0.360 4.360
15 H 0.089 0.911
16 C -0.203 4.203
17 N -0.582 5.582
18 Si 0.731 3.269
19 H -0.205 1.205
20 H -0.220 1.220
21 H -0.220 1.220
22 C -0.195 4.195
23 C -0.006 4.006
24 O -0.312 6.312
25 C -0.011 4.011
26 C -0.189 4.189
27 C 0.043 3.957
28 H 0.098 0.902
29 H 0.115 0.885
30 H 0.109 0.891
31 H 0.179 0.821
32 H 0.168 0.832
33 H 0.228 0.772
34 H 0.069 0.931
35 H 0.087 0.913
36 H 0.218 0.782
37 H 0.063 0.937
38 H 0.075 0.925
39 H 0.096 0.904
40 H 0.085 0.915
41 H 0.097 0.903
42 H 0.076 0.924
43 H 0.099 0.901
44 H 0.085 0.915
45 H 0.089 0.911
46 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -6.386 7.932 -10.445 14.587
hybrid contribution -0.629 0.452 1.415 1.613
sum -7.015 8.383 -9.030 14.179
Atomic orbital electron populations
1.22505 0.76162 1.05927 1.04179 1.42646 1.08611 1.04469 1.60491
1.21660 0.94299 0.88359 0.95452 1.22457 0.93165 1.01335 1.12665
1.18201 0.89290 0.87032 0.76346 1.90805 1.14356 1.88993 1.42197
1.22602 0.92173 0.97493 1.17874 1.17421 0.87143 0.82627 0.77319
1.90808 1.13032 1.87042 1.49378 1.45588 1.09826 1.05241 1.74973
1.21734 0.95101 0.82869 1.00629 1.19859 0.90785 0.91981 0.87732
1.42464 1.05264 1.86869 1.00827 1.19138 0.93612 1.39149 0.84056
0.91090 1.24640 0.95667 1.02180 0.97782 1.69642 1.04142 1.54969
1.29422 0.86219 0.78563 0.77171 0.84914 1.20474 1.22002 1.21966
1.22483 0.98623 0.96333 1.02055 1.22451 0.92874 0.97479 0.87827
1.87805 1.60755 1.38674 1.43937 1.22453 0.93016 0.84370 1.01221
1.22352 0.99291 0.98840 0.98384 1.22305 0.93374 0.89058 0.90987
0.90176 0.88534 0.89118 0.82069 0.83166 0.77239 0.93105 0.91333
0.78221 0.93722 0.92485 0.90441 0.91491 0.90314 0.92384 0.90080
0.91503 0.91080 0.81533
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.05 0.22 10.53 59.85 0.63 0.85 16
2 N -0.48 -4.01 2.97 -124.40 -0.37 -4.38 16
3 C 0.13 1.04 10.17 -17.09 -0.17 0.87 16
4 C -0.27 -3.35 10.01 -39.47 -0.40 -3.74 16
5 C 0.41 7.37 6.97 -34.67 -0.24 7.13 16
6 O -0.48 -11.16 16.41 -15.17 -0.25 -11.41 16
7 C -0.29 -4.95 6.05 -102.72 -0.62 -5.57 16
8 C 0.57 11.59 7.77 -12.58 -0.10 11.49 16
9 O -0.53 -13.16 15.57 -14.76 -0.23 -13.39 16
10 N -0.70 -12.61 5.12 -61.43 -0.31 -12.93 16
11 C 0.12 2.29 4.32 -4.04 -0.02 2.27 16
12 C 0.19 3.27 0.41 -131.64 -0.05 3.21 16
13 N -0.71 -14.69 3.77 -47.06 -0.18 -14.87 16
14 C -0.23 -5.60 8.70 -15.06 -0.13 -5.73 16
15 H 0.07 1.80 6.75 -52.48 -0.35 1.44 16
16 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16
17 N -0.93 -24.97 13.07 55.49 0.73 -24.25 16
18 Si 0.90 21.72 29.55 -169.99 -5.02 16.70 16
19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16
21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16
22 C -0.15 -2.62 4.83 -26.58 -0.13 -2.75 16
23 C 0.07 1.17 6.68 37.21 0.25 1.42 16
24 O -0.39 -6.52 10.77 -35.23 -0.38 -6.89 16
25 C 0.07 0.97 6.67 37.20 0.25 1.22 16
26 C -0.15 -2.17 4.80 -26.59 -0.13 -2.30 16
27 C 0.17 2.05 9.79 -16.54 -0.16 1.89 16
28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16
29 H 0.10 0.41 7.96 -51.93 -0.41 0.00 16
30 H 0.09 0.19 7.96 -51.93 -0.41 -0.23 16
31 H 0.16 0.58 7.97 -52.49 -0.42 0.16 16
32 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16
33 H 0.39 6.20 5.38 -40.82 -0.22 5.98 16
34 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16
35 H 0.07 1.49 7.55 -51.93 -0.39 1.10 16
36 H 0.38 8.32 6.72 -40.82 -0.27 8.04 16
37 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16
38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16
39 H 0.08 1.42 7.12 -51.93 -0.37 1.05 16
40 H 0.07 1.27 7.75 -51.93 -0.40 0.87 16
41 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16
42 H 0.06 0.93 7.09 -51.93 -0.37 0.56 16
43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
44 H 0.07 0.87 7.21 -51.93 -0.37 0.49 16
45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
46 H 0.17 1.66 6.35 -52.49 -0.33 1.32 16
LS Contribution 372.77 15.07 5.62 5.62
Total: -1.00 -36.86 372.77 -7.95 -44.80
By element:
Atomic # 1 Polarization: 17.43 SS G_CDS: -6.43 Total: 11.00 kcal
Atomic # 6 Polarization: 11.10 SS G_CDS: -1.12 Total: 9.98 kcal
Atomic # 7 Polarization: -56.28 SS G_CDS: -0.14 Total: -56.41 kcal
Atomic # 8 Polarization: -30.83 SS G_CDS: -0.86 Total: -31.69 kcal
Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal
Total LS contribution 5.62 Total: 5.62 kcal
Total: -36.86 -7.95 -44.80 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001754738842.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.528 kcal
(2) G-P(sol) polarization free energy of solvation -36.856 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.384 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.803 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.331 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds