Wall clock time and date at job start Tue Mar 31 2020 19:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35646 * 117.00350 * 2 1 4 4 C 1.39335 * 120.53731 * 0.02562 * 3 2 1 5 5 C 1.38311 * 118.43956 * 179.97438 * 4 3 2 6 6 C 1.38764 * 119.44101 * 359.97438 * 5 4 3 7 7 N 1.31377 * 121.07165 * 0.02562 * 6 5 4 8 8 C 1.32864 * 121.68996 * 359.97438 * 7 6 5 9 9 C 1.47833 * 119.77840 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99928 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00016 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00193 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47602 * 176.56605 * 12 11 9 14 14 N 1.46502 * 109.54150 * 54.54235 * 13 12 11 15 15 C 1.36939 * 119.99858 * 62.02480 * 14 13 12 16 16 H 1.08004 * 119.99794 * 354.00836 * 15 14 13 17 17 C 1.38812 * 120.00168 * 174.00864 * 15 14 13 18 18 N 1.31618 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47013 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47203 * 120.00202 * 19 17 15 22 22 H 1.48498 * 109.47241 * 240.00372 * 19 17 15 23 23 C 1.53181 * 109.54305 * 294.37150 * 13 12 11 24 24 C 1.53104 * 109.15946 * 183.23960 * 23 13 12 25 25 O 1.42910 * 109.48404 * 57.47158 * 24 23 13 26 26 C 1.42903 * 114.09769 * 298.88784 * 25 24 23 27 27 C 1.53092 * 109.41404 * 61.15980 * 26 25 24 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46910 * 299.99900 * 1 2 3 30 30 H 1.09002 * 109.46766 * 59.99769 * 1 2 3 31 31 H 1.07999 * 120.78757 * 0.25031 * 4 3 2 32 32 H 1.07996 * 120.27498 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.46567 * 179.97438 * 6 5 4 34 34 H 0.97008 * 120.00345 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47354 * 296.57114 * 12 11 9 36 36 H 1.09007 * 109.47208 * 56.56588 * 12 11 9 37 37 H 0.96996 * 119.99928 * 242.01879 * 14 13 12 38 38 H 0.97001 * 120.00358 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.51924 * 303.05242 * 23 13 12 40 40 H 1.08998 * 109.52596 * 63.24111 * 23 13 12 41 41 H 1.08997 * 109.40715 * 297.49334 * 24 23 13 42 42 H 1.09000 * 109.49399 * 177.50595 * 24 23 13 43 43 H 1.09000 * 109.47971 * 301.17818 * 26 25 24 44 44 H 1.08997 * 109.48919 * 181.14725 * 26 25 24 45 45 H 1.08996 * 109.52204 * 182.48001 * 27 26 25 46 46 H 1.09003 * 109.57222 * 62.33049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3842 0.0005 5 6 1.9698 3.5928 0.0011 6 6 3.3574 3.6010 0.0016 7 7 4.0421 2.4798 0.0011 8 6 3.4410 1.2949 0.0006 9 6 4.2531 0.0596 0.0006 10 8 3.7074 -1.0266 0.0006 11 7 5.5986 0.1377 0.0016 12 6 6.4034 -1.0864 0.0022 13 6 7.8868 -0.7216 -0.0830 14 7 8.2253 0.2096 0.9962 15 6 8.0912 -0.1786 2.3026 16 1 7.6458 -1.1336 2.5391 17 6 8.5279 0.6554 3.3227 18 7 9.0702 1.8194 3.0344 19 14 8.3444 0.1262 5.1048 20 1 7.7084 -1.2145 5.1600 21 1 9.6837 0.0650 5.7434 22 1 7.4957 1.1073 5.8276 23 6 8.1760 -0.0645 -1.4362 24 6 9.6758 0.2232 -1.5448 25 8 10.4076 -0.9935 -1.3817 26 6 10.2128 -1.6262 -0.1152 27 6 8.7350 -1.9901 0.0499 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2176 2.3527 0.0050 32 1 1.4196 4.5221 0.0019 33 1 3.8831 4.5444 0.0016 34 1 6.0342 1.0045 0.0020 35 1 6.2183 -1.6426 0.9212 36 1 6.1306 -1.7011 -0.8557 37 1 8.5443 1.1010 0.7854 38 1 9.3750 2.4024 3.7472 39 1 7.8764 -0.7377 -2.2394 40 1 7.6181 0.8686 -1.5146 41 1 9.9665 0.9292 -0.7669 42 1 9.8943 0.6504 -2.5235 43 1 10.5105 -0.9443 0.6813 44 1 10.8180 -2.5313 -0.0640 45 1 8.5766 -2.4329 1.0332 46 1 8.4463 -2.7039 -0.7217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754742787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:32 Heat of formation + Delta-G solvation = -62.759795 kcal Electronic energy + Delta-G solvation = -30115.494710 eV Core-core repulsion = 26006.319507 eV Total energy + Delta-G solvation = -4109.175203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87820 -39.41794 -38.40739 -38.10751 -35.69322 -33.38034 -32.51482 -31.90015 -30.84179 -30.55429 -29.09745 -27.68347 -26.85576 -24.46360 -23.95596 -22.97997 -22.86371 -21.92765 -20.19106 -18.70722 -18.27240 -17.56076 -17.20373 -16.99376 -16.05225 -15.64750 -15.43426 -15.32015 -15.11202 -14.76132 -14.50022 -14.35172 -14.21265 -13.88213 -13.80843 -13.54940 -13.32458 -12.97733 -12.59466 -12.56242 -12.11350 -11.93152 -11.65887 -11.62854 -11.61616 -11.35629 -10.88588 -10.82784 -10.70347 -10.27122 -10.01021 -9.94116 -9.93261 -9.67134 -9.62824 -9.35783 -9.14146 -8.71196 -8.58158 -8.25102 -7.02125 -5.79892 -3.09786 0.67621 1.14684 3.04760 3.06941 3.41795 3.49565 3.50052 3.60126 4.00688 4.33765 4.46159 4.46716 4.56541 4.63913 4.85947 4.92950 4.94434 5.10449 5.25974 5.28978 5.34484 5.44467 5.49373 5.61045 5.65191 5.73943 5.79787 5.82304 5.86963 6.08973 6.17777 6.21130 6.25231 6.30375 6.40716 6.49920 6.62205 6.66570 6.81068 6.87817 7.09551 7.12992 7.71847 7.74193 7.79960 8.22511 8.37268 8.78524 9.50063 10.01189 10.38031 11.41930 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.004027 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.889488 B = 6952.086456 C = 7981.875931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.131 3.869 4 C -0.179 4.179 5 C -0.113 4.113 6 C 0.059 3.941 7 N -0.412 5.412 8 C 0.054 3.946 9 C 0.564 3.436 10 O -0.534 6.534 11 N -0.681 5.681 12 C 0.117 3.883 13 C 0.189 3.811 14 N -0.711 5.711 15 C -0.233 4.233 16 H 0.070 0.930 17 C -0.006 4.006 18 N -0.928 5.928 19 Si 0.900 3.100 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.293 1.293 23 C -0.151 4.151 24 C 0.066 3.934 25 O -0.394 6.394 26 C 0.070 3.930 27 C -0.152 4.152 28 H 0.104 0.896 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.165 0.835 34 H 0.413 0.587 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.385 0.615 38 H 0.254 0.746 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.405 2.266 -9.630 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.080 3.920 4 C -0.205 4.205 5 C -0.134 4.134 6 C -0.102 4.102 7 N -0.123 5.123 8 C -0.085 4.085 9 C 0.347 3.653 10 O -0.411 6.411 11 N -0.332 5.332 12 C -0.009 4.009 13 C 0.097 3.903 14 N -0.354 5.354 15 C -0.364 4.364 16 H 0.088 0.912 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.731 3.269 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.189 4.189 24 C -0.011 4.011 25 O -0.313 6.313 26 C -0.006 4.006 27 C -0.192 4.192 28 H 0.122 0.878 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.182 0.818 34 H 0.250 0.750 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.220 0.780 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.095 0.905 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.659 1.091 -9.596 15.922 hybrid contribution -1.344 0.880 1.428 2.150 sum -14.003 1.971 -8.168 16.331 Atomic orbital electron populations 1.23189 0.78936 1.04502 1.00995 1.86444 1.20551 1.24591 1.86518 1.20069 0.92423 0.85650 0.93809 1.21702 1.00852 0.91906 1.06078 1.22179 0.95827 0.98266 0.97083 1.22746 0.91263 0.96582 0.99560 1.67713 1.39740 0.97346 1.07521 1.20894 0.88543 0.93215 1.05894 1.17567 0.82649 0.86963 0.78088 1.90784 1.71986 1.27526 1.50764 1.45594 1.04717 1.11303 1.71552 1.21860 0.92064 0.86043 1.00960 1.19824 0.90841 0.91100 0.88508 1.42478 1.78826 1.13233 1.00818 1.19102 1.32626 1.02116 0.82545 0.91201 1.24673 1.01070 0.96873 0.97594 1.69655 1.46484 1.10202 1.31245 0.86228 0.77089 0.77718 0.85829 1.20608 1.21939 1.22067 1.22353 0.97554 1.01496 0.97547 1.22458 0.90490 0.86985 1.01119 1.87788 1.68615 1.38370 1.36522 1.22445 0.95336 0.97096 0.85751 1.22445 0.96541 0.98141 1.02067 0.87775 0.92649 0.92689 0.83905 0.84157 0.81803 0.74980 0.91613 0.92662 0.78001 0.93625 0.91315 0.91086 0.92175 0.90130 0.91218 0.90467 0.90461 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 101.05 0.99 1.16 16 2 O -0.27 -4.05 8.56 -40.59 -0.35 -4.40 16 3 C 0.13 1.93 6.71 -38.56 -0.26 1.67 16 4 C -0.18 -1.91 9.13 -39.15 -0.36 -2.27 16 5 C -0.11 -1.09 10.10 -39.36 -0.40 -1.49 16 6 C 0.06 0.71 11.17 -17.55 -0.20 0.51 16 7 N -0.41 -6.58 9.54 -9.71 -0.09 -6.67 16 8 C 0.05 0.93 6.76 -82.88 -0.56 0.37 16 9 C 0.56 11.17 7.80 -12.34 -0.10 11.08 16 10 O -0.53 -11.71 15.14 -16.63 -0.25 -11.96 16 11 N -0.68 -13.13 5.12 -61.25 -0.31 -13.44 16 12 C 0.12 2.24 4.36 -4.04 -0.02 2.22 16 13 C 0.19 3.53 0.41 -131.64 -0.05 3.47 16 14 N -0.71 -15.87 3.60 -47.06 -0.17 -16.04 16 15 C -0.23 -5.95 8.67 -15.06 -0.13 -6.08 16 16 H 0.07 1.81 6.78 -52.48 -0.36 1.45 16 17 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 18 N -0.93 -26.47 13.07 55.49 0.73 -25.74 16 19 Si 0.90 22.12 29.55 -169.99 -5.02 17.10 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 C -0.15 -2.46 4.80 -26.58 -0.13 -2.59 16 24 C 0.07 1.10 6.67 37.21 0.25 1.34 16 25 O -0.39 -7.08 10.77 -35.23 -0.38 -7.46 16 26 C 0.07 1.26 6.68 37.21 0.25 1.51 16 27 C -0.15 -2.71 4.79 -26.59 -0.13 -2.84 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.40 7.69 -51.93 -0.40 0.01 16 30 H 0.05 0.38 7.70 -51.93 -0.40 -0.02 16 31 H 0.14 1.04 6.46 -52.49 -0.34 0.70 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.41 8.03 6.75 -40.82 -0.28 7.76 16 35 H 0.07 1.40 7.47 -51.93 -0.39 1.01 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.39 9.24 6.82 -40.82 -0.28 8.96 16 38 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.13 7.40 -51.93 -0.38 0.74 16 41 H 0.06 1.10 7.15 -51.93 -0.37 0.73 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.07 1.45 7.75 -51.93 -0.40 1.05 16 44 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.47 7.20 -51.93 -0.37 1.09 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 372.50 15.07 5.61 5.61 Total: -1.00 -32.42 372.50 -7.65 -40.08 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: -6.48 Total: 15.10 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.93 Total: 7.83 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.15 Total: -61.90 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.98 Total: -23.82 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.42 -7.65 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754742787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.684 kcal (2) G-P(sol) polarization free energy of solvation -32.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds