Wall clock time and date at job start Tue Mar 31 2020 19:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35646 * 117.00350 * 2 1 4 4 C 1.39335 * 120.53731 * 0.02562 * 3 2 1 5 5 C 1.38311 * 118.43956 * 179.97438 * 4 3 2 6 6 C 1.38764 * 119.44101 * 359.97438 * 5 4 3 7 7 N 1.31377 * 121.07165 * 0.02562 * 6 5 4 8 8 C 1.32864 * 121.68996 * 359.97438 * 7 6 5 9 9 C 1.47833 * 119.77840 * 180.02562 * 8 7 6 10 10 O 1.21555 * 119.99928 * 179.97438 * 9 8 7 11 11 N 1.34774 * 120.00016 * 0.02562 * 9 8 7 12 12 C 1.46499 * 120.00193 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47602 * 176.56605 * 12 11 9 14 14 N 1.46502 * 109.54150 * 54.54235 * 13 12 11 15 15 C 1.36939 * 119.99858 * 62.02480 * 14 13 12 16 16 H 1.08004 * 119.99794 * 354.00836 * 15 14 13 17 17 C 1.38812 * 120.00168 * 174.00864 * 15 14 13 18 18 N 1.31618 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00197 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47013 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47203 * 120.00202 * 19 17 15 22 22 H 1.48498 * 109.47241 * 240.00372 * 19 17 15 23 23 C 1.53181 * 109.54305 * 294.37150 * 13 12 11 24 24 C 1.53104 * 109.15946 * 183.23960 * 23 13 12 25 25 O 1.42910 * 109.48404 * 57.47158 * 24 23 13 26 26 C 1.42903 * 114.09769 * 298.88784 * 25 24 23 27 27 C 1.53092 * 109.41404 * 61.15980 * 26 25 24 28 28 H 1.09001 * 109.47505 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46910 * 299.99900 * 1 2 3 30 30 H 1.09002 * 109.46766 * 59.99769 * 1 2 3 31 31 H 1.07999 * 120.78757 * 0.25031 * 4 3 2 32 32 H 1.07996 * 120.27498 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.46567 * 179.97438 * 6 5 4 34 34 H 0.97008 * 120.00345 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47354 * 296.57114 * 12 11 9 36 36 H 1.09007 * 109.47208 * 56.56588 * 12 11 9 37 37 H 0.96996 * 119.99928 * 242.01879 * 14 13 12 38 38 H 0.97001 * 120.00358 * 179.97438 * 18 17 15 39 39 H 1.09005 * 109.51924 * 303.05242 * 23 13 12 40 40 H 1.08998 * 109.52596 * 63.24111 * 23 13 12 41 41 H 1.08997 * 109.40715 * 297.49334 * 24 23 13 42 42 H 1.09000 * 109.49399 * 177.50595 * 24 23 13 43 43 H 1.09000 * 109.47971 * 301.17818 * 26 25 24 44 44 H 1.08997 * 109.48919 * 181.14725 * 26 25 24 45 45 H 1.08996 * 109.52204 * 182.48001 * 27 26 25 46 46 H 1.09003 * 109.57222 * 62.33049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2971 2.3842 0.0005 5 6 1.9698 3.5928 0.0011 6 6 3.3574 3.6010 0.0016 7 7 4.0421 2.4798 0.0011 8 6 3.4410 1.2949 0.0006 9 6 4.2531 0.0596 0.0006 10 8 3.7074 -1.0266 0.0006 11 7 5.5986 0.1377 0.0016 12 6 6.4034 -1.0864 0.0022 13 6 7.8868 -0.7216 -0.0830 14 7 8.2253 0.2096 0.9962 15 6 8.0912 -0.1786 2.3026 16 1 7.6458 -1.1336 2.5391 17 6 8.5279 0.6554 3.3227 18 7 9.0702 1.8194 3.0344 19 14 8.3444 0.1262 5.1048 20 1 7.7084 -1.2145 5.1600 21 1 9.6837 0.0650 5.7434 22 1 7.4957 1.1073 5.8276 23 6 8.1760 -0.0645 -1.4362 24 6 9.6758 0.2232 -1.5448 25 8 10.4076 -0.9935 -1.3817 26 6 10.2128 -1.6262 -0.1152 27 6 8.7350 -1.9901 0.0499 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2176 2.3527 0.0050 32 1 1.4196 4.5221 0.0019 33 1 3.8831 4.5444 0.0016 34 1 6.0342 1.0045 0.0020 35 1 6.2183 -1.6426 0.9212 36 1 6.1306 -1.7011 -0.8557 37 1 8.5443 1.1010 0.7854 38 1 9.3750 2.4024 3.7472 39 1 7.8764 -0.7377 -2.2394 40 1 7.6181 0.8686 -1.5146 41 1 9.9665 0.9292 -0.7669 42 1 9.8943 0.6504 -2.5235 43 1 10.5105 -0.9443 0.6813 44 1 10.8180 -2.5313 -0.0640 45 1 8.5766 -2.4329 1.0332 46 1 8.4463 -2.7039 -0.7217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754742787.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:31 Heat of formation + Delta-G solvation = -86.193135 kcal Electronic energy + Delta-G solvation = -30116.510855 eV Core-core repulsion = 26006.319507 eV Total energy + Delta-G solvation = -4110.191349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92792 -40.88373 -39.76414 -39.14730 -37.26714 -35.09091 -33.96222 -33.18156 -31.97640 -31.83401 -30.94419 -28.62241 -28.11427 -26.00442 -25.49760 -24.39491 -23.85816 -23.32378 -21.57927 -20.22190 -19.43419 -19.05551 -18.66369 -18.12047 -17.18949 -16.99383 -16.85397 -16.68074 -16.46992 -16.11271 -15.99894 -15.75467 -15.37059 -15.35930 -15.21052 -14.78738 -14.47279 -14.32533 -14.13297 -13.70294 -13.53286 -13.43360 -13.16027 -12.92792 -12.87742 -12.68189 -12.44067 -12.40362 -12.20960 -12.08681 -11.75542 -11.43800 -11.22223 -11.13505 -10.98493 -10.82744 -10.57838 -10.31386 -9.95082 -9.46377 -8.96585 -7.89847 -5.16325 -0.33445 0.24003 1.42658 1.45827 1.52432 1.80990 2.17474 2.28919 2.56340 2.86202 3.07892 3.28626 3.42756 3.61282 3.75172 3.77418 3.88344 3.98933 4.01515 4.15939 4.22940 4.24556 4.29524 4.35313 4.47668 4.49113 4.61310 4.69003 4.74724 4.77356 4.82904 4.89584 4.92113 5.00035 5.02904 5.09159 5.22611 5.29351 5.34567 5.43197 5.57749 5.63207 6.22993 6.31542 6.37155 6.57244 6.88802 7.29757 7.40579 8.09230 8.36642 9.32561 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010560 B = 0.004027 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2650.889488 B = 6952.086456 C = 7981.875931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.087 4.087 6 C 0.048 3.952 7 N -0.444 5.444 8 C 0.003 3.997 9 C 0.556 3.444 10 O -0.567 6.567 11 N -0.683 5.683 12 C 0.124 3.876 13 C 0.187 3.813 14 N -0.711 5.711 15 C -0.213 4.213 16 H 0.064 0.936 17 C -0.060 4.060 18 N -0.957 5.957 19 Si 0.949 3.051 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.301 1.301 23 C -0.143 4.143 24 C 0.067 3.933 25 O -0.396 6.396 26 C 0.076 3.924 27 C -0.148 4.148 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.183 0.817 32 H 0.191 0.809 33 H 0.190 0.810 34 H 0.411 0.589 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.377 0.623 38 H 0.247 0.753 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.113 0.887 43 H 0.035 0.965 44 H 0.101 0.899 45 H 0.061 0.939 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.506 3.352 -10.952 19.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.071 3.929 4 C -0.196 4.196 5 C -0.106 4.106 6 C -0.114 4.114 7 N -0.156 5.156 8 C -0.133 4.133 9 C 0.342 3.658 10 O -0.447 6.447 11 N -0.333 5.333 12 C -0.002 4.002 13 C 0.096 3.904 14 N -0.352 5.352 15 C -0.345 4.345 16 H 0.082 0.918 17 C -0.253 4.253 18 N -0.608 5.608 19 Si 0.781 3.219 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.229 1.229 23 C -0.181 4.181 24 C -0.010 4.010 25 O -0.315 6.315 26 C -0.001 4.001 27 C -0.188 4.188 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.200 0.800 32 H 0.208 0.792 33 H 0.207 0.793 34 H 0.248 0.752 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.210 0.790 38 H 0.057 0.943 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.131 0.869 43 H 0.054 0.946 44 H 0.119 0.881 45 H 0.080 0.920 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.772 2.126 -10.941 18.505 hybrid contribution -0.845 0.592 1.760 2.040 sum -15.617 2.718 -9.181 18.318 Atomic orbital electron populations 1.23528 0.76153 1.05847 1.02999 1.86384 1.23606 1.25487 1.86542 1.20249 0.91904 0.87026 0.93677 1.22174 1.02607 0.90552 1.04287 1.22722 0.94888 0.99865 0.93163 1.23381 0.92973 0.96240 0.98794 1.67588 1.41251 0.97986 1.08753 1.20519 0.89587 0.92559 1.10654 1.18138 0.82708 0.87957 0.76952 1.90731 1.72507 1.29078 1.52404 1.45606 1.04943 1.10945 1.71780 1.21745 0.92301 0.86208 0.99974 1.20021 0.90462 0.91102 0.88782 1.42485 1.78500 1.13493 1.00712 1.19230 1.30140 1.01151 0.83975 0.91811 1.25200 1.02422 0.97398 1.00310 1.69766 1.48482 1.11118 1.31456 0.85433 0.76588 0.77185 0.82734 1.20171 1.22099 1.22912 1.22295 0.97622 1.01880 0.96260 1.22550 0.90247 0.86133 1.02050 1.87792 1.68934 1.38738 1.36017 1.22368 0.95535 0.97216 0.84949 1.22404 0.96436 0.97923 1.02055 0.87033 0.90818 0.90272 0.79957 0.79164 0.79305 0.75207 0.94491 0.91486 0.78974 0.94337 0.89393 0.90713 0.94480 0.86939 0.94619 0.88080 0.91996 0.90272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.83 113.37 1.11 1.25 16 2 O -0.31 -9.17 8.56 -68.62 -0.59 -9.76 16 3 C 0.12 3.51 6.71 22.93 0.15 3.67 16 4 C -0.17 -3.03 9.13 22.55 0.21 -2.82 16 5 C -0.09 -1.30 10.10 22.41 0.23 -1.08 16 6 C 0.05 1.06 11.17 84.89 0.95 2.00 16 7 N -0.44 -14.19 9.54 -184.63 -1.76 -15.95 16 8 C 0.00 0.12 6.76 41.93 0.28 0.40 16 9 C 0.56 23.07 7.80 86.78 0.68 23.74 16 10 O -0.57 -26.11 15.14 17.10 0.26 -25.85 16 11 N -0.68 -27.38 5.12 -465.99 -2.39 -29.76 16 12 C 0.12 4.87 4.36 86.38 0.38 5.25 16 13 C 0.19 7.03 0.41 3.72 0.00 7.03 16 14 N -0.71 -32.64 3.60 -302.81 -1.09 -33.73 16 15 C -0.21 -11.19 8.67 84.03 0.73 -10.46 16 16 H 0.06 3.41 6.78 -2.91 -0.02 3.39 16 17 C -0.06 -3.36 5.50 84.86 0.47 -2.90 16 18 N -0.96 -56.17 13.07 21.65 0.28 -55.88 16 19 Si 0.95 46.63 29.55 68.60 2.03 48.66 16 20 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 21 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 22 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 23 C -0.14 -4.51 4.80 30.69 0.15 -4.37 16 24 C 0.07 2.13 6.67 72.02 0.48 2.61 16 25 O -0.40 -13.67 10.77 -148.98 -1.60 -15.27 16 26 C 0.08 2.69 6.68 72.01 0.48 3.17 16 27 C -0.15 -5.25 4.79 30.68 0.15 -5.10 16 28 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 0.87 7.69 -2.39 -0.02 0.85 16 30 H 0.08 0.84 7.70 -2.39 -0.02 0.82 16 31 H 0.18 1.70 6.46 -2.91 -0.02 1.68 16 32 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.19 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.41 16.65 6.75 -92.70 -0.63 16.02 16 35 H 0.04 1.65 7.47 -2.39 -0.02 1.63 16 36 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 37 H 0.38 18.67 6.82 -92.71 -0.63 18.04 16 38 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 39 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.07 2.33 7.40 -2.39 -0.02 2.31 16 41 H 0.04 1.36 7.15 -2.39 -0.02 1.35 16 42 H 0.11 2.89 8.14 -2.39 -0.02 2.87 16 43 H 0.04 1.51 7.75 -2.39 -0.02 1.49 16 44 H 0.10 3.07 8.14 -2.39 -0.02 3.06 16 45 H 0.06 2.38 7.20 -2.39 -0.02 2.36 16 46 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -74.89 372.50 1.34 -73.54 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -0.23 Total: 41.59 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 6.44 Total: 22.41 kcal Atomic # 7 Polarization: -130.37 SS G_CDS: -4.96 Total: -135.32 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -1.93 Total: -50.88 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -74.89 1.34 -73.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754742787.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.649 kcal (2) G-P(sol) polarization free energy of solvation -74.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds