Wall clock time and date at job start Tue Mar 31 2020 19:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35911 * 117.00515 * 2 1 4 4 C 1.39139 * 120.47065 * 0.02622 * 3 2 1 5 5 C 1.38529 * 118.37501 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.22259 * 359.97438 * 5 4 3 7 7 N 1.31851 * 120.88557 * 359.74572 * 6 5 4 8 8 C 1.31844 * 121.77995 * 0.52610 * 7 6 5 9 9 C 1.50698 * 119.65832 * 179.75101 * 8 7 6 10 10 C 1.50698 * 109.46944 * 269.72108 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 O 1.42895 * 110.88448 * 297.57268 * 14 13 12 16 16 C 1.55155 * 111.00403 * 173.64756 * 14 13 12 17 17 C 1.54323 * 102.94314 * 206.42062 * 16 14 13 18 18 N 1.47029 * 107.27091 * 22.19889 * 17 16 14 19 19 C 1.36935 * 125.64889 * 181.09283 * 18 17 16 20 20 H 1.07997 * 119.99671 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99810 * 359.95905 * 19 18 17 22 22 N 1.31614 * 120.00485 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99588 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47165 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47236 * 119.99723 * 23 21 19 26 26 H 1.48497 * 109.46996 * 239.99516 * 23 21 19 27 27 C 1.47432 * 108.69839 * 1.05508 * 18 17 16 28 28 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47121 * 299.99623 * 1 2 3 30 30 H 1.09001 * 109.46955 * 59.99552 * 1 2 3 31 31 H 1.08005 * 120.80984 * 359.95621 * 4 3 2 32 32 H 1.07999 * 120.39267 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.56206 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46601 * 149.72548 * 9 8 7 35 35 H 1.08993 * 109.46922 * 29.72848 * 9 8 7 36 36 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 37 37 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 38 38 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 39 39 H 0.96701 * 114.00190 * 59.30403 * 15 14 13 40 40 H 1.08998 * 110.72590 * 324.78876 * 16 14 13 41 41 H 1.09007 * 110.71607 * 88.06158 * 16 14 13 42 42 H 1.08998 * 109.88604 * 262.77777 * 17 16 14 43 43 H 1.08999 * 109.88123 * 141.61071 * 17 16 14 44 44 H 0.97003 * 120.00128 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.36211 * 217.03312 * 27 18 17 46 46 H 1.09000 * 110.45683 * 94.76491 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0005 5 6 1.9718 3.5945 0.0011 6 6 3.3543 3.5974 0.0016 7 7 4.0335 2.4674 0.0066 8 6 3.4306 1.2948 0.0010 9 6 4.2543 0.0328 0.0014 10 6 4.5292 -0.3880 -1.4192 11 8 4.0992 0.2721 -2.3414 12 7 5.2540 -1.4974 -1.6651 13 6 5.5162 -1.9099 -3.0461 14 6 6.3482 -3.1939 -3.0457 15 8 7.6199 -2.9767 -2.4312 16 6 6.5127 -3.7505 -4.4846 17 6 6.7211 -5.2614 -4.2491 18 7 6.1550 -5.5797 -2.9300 19 6 6.1570 -6.8142 -2.3375 20 1 5.7140 -6.9453 -1.3613 21 6 6.7281 -7.8971 -2.9917 22 7 7.2672 -7.7374 -4.1817 23 14 6.7302 -9.5813 -2.1837 24 1 6.0671 -9.4950 -0.8577 25 1 5.9955 -10.5437 -3.0433 26 1 8.1302 -10.0439 -2.0073 27 6 5.5857 -4.3493 -2.3506 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2185 2.3518 0.0003 32 1 1.4235 4.5250 0.0019 33 1 3.8851 4.5380 0.0024 34 1 3.7073 -0.7577 0.5152 35 1 5.1979 0.2151 0.5156 36 1 5.5983 -2.0252 -0.9276 37 1 4.5705 -2.0900 -3.5574 38 1 6.0643 -1.1220 -3.5628 39 1 7.5671 -2.6756 -1.5138 40 1 5.6122 -3.5724 -5.0723 41 1 7.3845 -3.3121 -4.9703 42 1 7.7856 -5.4952 -4.2619 43 1 6.2048 -5.8316 -5.0213 44 1 7.6660 -8.4943 -4.6390 45 1 5.7560 -4.3229 -1.2743 46 1 4.5193 -4.2844 -2.5668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754753890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:17 Heat of formation + Delta-G solvation = -53.730428 kcal Electronic energy + Delta-G solvation = -28912.745639 eV Core-core repulsion = 24803.961979 eV Total energy + Delta-G solvation = -4108.783660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.10912 -39.68653 -38.47202 -38.25149 -35.07218 -34.05435 -33.41704 -32.09721 -31.70954 -29.76654 -28.93080 -27.87131 -27.54733 -25.58432 -23.72128 -23.17687 -22.61775 -20.76536 -20.03719 -19.80010 -18.43908 -17.59748 -17.44857 -16.91976 -16.66466 -16.20128 -15.96749 -15.39697 -15.29443 -14.70302 -14.68096 -14.28241 -14.21234 -14.14512 -13.76934 -13.55519 -13.36514 -13.22808 -12.84201 -12.62210 -12.41624 -11.93730 -11.87343 -11.77843 -11.72238 -11.66569 -10.98148 -10.88774 -10.68625 -10.32879 -10.21160 -10.08273 -10.05934 -9.85530 -9.77590 -9.67816 -9.38353 -9.01743 -8.61515 -8.58062 -6.81608 -5.70155 -3.03664 0.80630 0.99600 2.69446 2.85270 3.09586 3.40376 3.45145 3.48146 3.59808 4.01256 4.29135 4.40338 4.48154 4.54438 4.64556 4.75893 4.79299 4.81633 4.92363 5.00286 5.12706 5.14672 5.18923 5.21070 5.41747 5.51301 5.54538 5.69152 5.69811 5.78108 5.88619 6.01562 6.13468 6.20222 6.39556 6.39751 6.46726 6.58506 6.64700 6.86676 7.47790 7.55354 7.66366 7.72883 7.85339 8.03342 8.24730 8.26752 9.22197 9.82453 10.47894 11.41648 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002386 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.722483 B =11733.113978 C =12502.712558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.094 3.906 4 C -0.166 4.166 5 C -0.134 4.134 6 C 0.062 3.938 7 N -0.438 5.438 8 C 0.127 3.873 9 C -0.088 4.088 10 C 0.525 3.475 11 O -0.537 6.537 12 N -0.727 5.727 13 C 0.106 3.894 14 C 0.102 3.898 15 O -0.537 6.537 16 C -0.128 4.128 17 C 0.182 3.818 18 N -0.599 5.599 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.290 1.290 27 C 0.118 3.882 28 H 0.105 0.895 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.139 0.861 32 H 0.137 0.863 33 H 0.159 0.841 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.399 0.601 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.364 0.636 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.252 0.748 45 H 0.038 0.962 46 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 21.453 10.306 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.217 6.217 3 C 0.045 3.955 4 C -0.192 4.192 5 C -0.154 4.154 6 C -0.095 4.095 7 N -0.147 5.147 8 C -0.013 4.013 9 C -0.128 4.128 10 C 0.310 3.690 11 O -0.413 6.413 12 N -0.379 5.379 13 C -0.018 4.018 14 C 0.060 3.940 15 O -0.341 6.341 16 C -0.167 4.167 17 C 0.057 3.943 18 N -0.325 5.325 19 C -0.357 4.357 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.743 3.257 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.217 1.217 27 C -0.009 4.009 28 H 0.123 0.877 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.176 0.824 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.234 0.766 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.210 0.790 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -11.211 21.328 8.982 25.715 hybrid contribution -1.310 -0.796 1.220 1.959 sum -12.520 20.532 10.202 26.123 Atomic orbital electron populations 1.23130 0.78020 1.04559 1.01255 1.86119 1.21636 1.25809 1.88135 1.19847 0.93076 0.85283 0.97248 1.21661 1.00746 0.92130 1.04700 1.21969 0.95767 0.98205 0.99468 1.22594 0.91441 0.96283 0.99144 1.67447 1.40024 0.97506 1.09766 1.19905 0.87725 0.93357 1.00305 1.20453 1.01877 0.94678 0.95819 1.20234 0.77739 0.80246 0.90744 1.90704 1.50944 1.53417 1.46284 1.45932 1.55376 1.27305 1.09300 1.22016 1.00339 0.96906 0.82576 1.22707 0.83474 0.91470 0.96348 1.86639 1.28286 1.89623 1.29519 1.22908 1.01511 0.99858 0.92427 1.21137 0.98921 0.86924 0.87315 1.44360 1.67308 1.03634 1.17180 1.19065 1.32369 0.83800 1.00421 0.90472 1.24808 1.00621 0.98107 0.96901 1.69972 1.43364 1.29635 1.13746 0.86040 0.77263 0.84132 0.78270 1.20552 1.21777 1.21742 1.22126 0.95355 0.87386 0.96080 0.87695 0.92602 0.92497 0.84306 0.84521 0.82420 0.86747 0.86831 0.76623 0.90550 0.90869 0.79039 0.90957 0.90947 0.93133 0.93810 0.93770 0.94373 0.95607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.83 101.05 0.99 1.16 16 2 O -0.31 -3.22 9.55 -19.46 -0.19 -3.41 16 3 C 0.09 1.05 6.67 -39.07 -0.26 0.79 16 4 C -0.17 -1.47 9.14 -39.14 -0.36 -1.83 16 5 C -0.13 -1.08 10.11 -39.47 -0.40 -1.48 16 6 C 0.06 0.60 11.18 -17.54 -0.20 0.41 16 7 N -0.44 -5.45 10.27 -9.35 -0.10 -5.55 16 8 C 0.13 1.57 5.29 -82.41 -0.44 1.13 16 9 C -0.09 -0.95 5.77 -29.04 -0.17 -1.11 16 10 C 0.52 7.26 7.82 -10.99 -0.09 7.17 16 11 O -0.54 -9.60 16.03 5.55 0.09 -9.51 16 12 N -0.73 -9.13 5.17 -60.29 -0.31 -9.44 16 13 C 0.11 1.57 4.89 -4.04 -0.02 1.55 16 14 C 0.10 1.76 0.95 -88.47 -0.08 1.68 16 15 O -0.54 -9.35 13.19 -35.23 -0.46 -9.81 16 16 C -0.13 -2.46 6.16 -24.90 -0.15 -2.61 16 17 C 0.18 4.49 5.37 -3.06 -0.02 4.48 16 18 N -0.60 -15.26 3.40 -170.07 -0.58 -15.84 16 19 C -0.23 -6.36 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -27.29 10.31 55.49 0.57 -26.72 16 23 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.12 2.33 5.93 -2.53 -0.01 2.31 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.26 7.70 -51.93 -0.40 -0.14 16 30 H 0.06 0.34 7.70 -51.93 -0.40 -0.06 16 31 H 0.14 0.84 6.45 -52.48 -0.34 0.50 16 32 H 0.14 0.66 8.06 -52.49 -0.42 0.23 16 33 H 0.16 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.11 1.03 7.52 -51.93 -0.39 0.64 16 35 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 4.06 7.30 -40.82 -0.30 3.77 16 37 H 0.08 1.19 8.11 -51.92 -0.42 0.77 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.36 4.76 8.16 45.56 0.37 5.13 16 40 H 0.07 1.25 8.01 -51.93 -0.42 0.84 16 41 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 42 H 0.05 1.41 7.38 -51.93 -0.38 1.03 16 43 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 44 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 46 H 0.03 0.52 8.03 -51.93 -0.42 0.10 16 LS Contribution 380.33 15.07 5.73 5.73 Total: -1.00 -37.12 380.33 -7.69 -44.81 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.98 Total: 5.81 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.45 Total: 6.81 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -0.41 Total: -57.55 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.56 Total: -22.74 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.12 -7.69 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754753890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.921 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds