Wall clock time and date at job start Tue Mar 31 2020 19:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35911 * 117.00515 * 2 1 4 4 C 1.39139 * 120.47065 * 0.02622 * 3 2 1 5 5 C 1.38529 * 118.37501 * 179.97438 * 4 3 2 6 6 C 1.38254 * 119.22259 * 359.97438 * 5 4 3 7 7 N 1.31851 * 120.88557 * 359.74572 * 6 5 4 8 8 C 1.31844 * 121.77995 * 0.52610 * 7 6 5 9 9 C 1.50698 * 119.65832 * 179.75101 * 8 7 6 10 10 C 1.50698 * 109.46944 * 269.72108 * 9 8 7 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 O 1.42895 * 110.88448 * 297.57268 * 14 13 12 16 16 C 1.55155 * 111.00403 * 173.64756 * 14 13 12 17 17 C 1.54323 * 102.94314 * 206.42062 * 16 14 13 18 18 N 1.47029 * 107.27091 * 22.19889 * 17 16 14 19 19 C 1.36935 * 125.64889 * 181.09283 * 18 17 16 20 20 H 1.07997 * 119.99671 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99810 * 359.95905 * 19 18 17 22 22 N 1.31614 * 120.00485 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99588 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47165 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47236 * 119.99723 * 23 21 19 26 26 H 1.48497 * 109.46996 * 239.99516 * 23 21 19 27 27 C 1.47432 * 108.69839 * 1.05508 * 18 17 16 28 28 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47121 * 299.99623 * 1 2 3 30 30 H 1.09001 * 109.46955 * 59.99552 * 1 2 3 31 31 H 1.08005 * 120.80984 * 359.95621 * 4 3 2 32 32 H 1.07999 * 120.39267 * 180.02562 * 5 4 3 33 33 H 1.08001 * 119.56206 * 180.02562 * 6 5 4 34 34 H 1.09003 * 109.46601 * 149.72548 * 9 8 7 35 35 H 1.08993 * 109.46922 * 29.72848 * 9 8 7 36 36 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 37 37 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 38 38 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 39 39 H 0.96701 * 114.00190 * 59.30403 * 15 14 13 40 40 H 1.08998 * 110.72590 * 324.78876 * 16 14 13 41 41 H 1.09007 * 110.71607 * 88.06158 * 16 14 13 42 42 H 1.08998 * 109.88604 * 262.77777 * 17 16 14 43 43 H 1.08999 * 109.88123 * 141.61071 * 17 16 14 44 44 H 0.97003 * 120.00128 * 180.02562 * 22 21 19 45 45 H 1.08997 * 110.36211 * 217.03312 * 27 18 17 46 46 H 1.09000 * 110.45683 * 94.76491 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0005 5 6 1.9718 3.5945 0.0011 6 6 3.3543 3.5974 0.0016 7 7 4.0335 2.4674 0.0066 8 6 3.4306 1.2948 0.0010 9 6 4.2543 0.0328 0.0014 10 6 4.5292 -0.3880 -1.4192 11 8 4.0992 0.2721 -2.3414 12 7 5.2540 -1.4974 -1.6651 13 6 5.5162 -1.9099 -3.0461 14 6 6.3482 -3.1939 -3.0457 15 8 7.6199 -2.9767 -2.4312 16 6 6.5127 -3.7505 -4.4846 17 6 6.7211 -5.2614 -4.2491 18 7 6.1550 -5.5797 -2.9300 19 6 6.1570 -6.8142 -2.3375 20 1 5.7140 -6.9453 -1.3613 21 6 6.7281 -7.8971 -2.9917 22 7 7.2672 -7.7374 -4.1817 23 14 6.7302 -9.5813 -2.1837 24 1 6.0671 -9.4950 -0.8577 25 1 5.9955 -10.5437 -3.0433 26 1 8.1302 -10.0439 -2.0073 27 6 5.5857 -4.3493 -2.3506 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 0.2185 2.3518 0.0003 32 1 1.4235 4.5250 0.0019 33 1 3.8851 4.5380 0.0024 34 1 3.7073 -0.7577 0.5152 35 1 5.1979 0.2151 0.5156 36 1 5.5983 -2.0252 -0.9276 37 1 4.5705 -2.0900 -3.5574 38 1 6.0643 -1.1220 -3.5628 39 1 7.5671 -2.6756 -1.5138 40 1 5.6122 -3.5724 -5.0723 41 1 7.3845 -3.3121 -4.9703 42 1 7.7856 -5.4952 -4.2619 43 1 6.2048 -5.8316 -5.0213 44 1 7.6660 -8.4943 -4.6390 45 1 5.7560 -4.3229 -1.2743 46 1 4.5193 -4.2844 -2.5668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754753890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:16 Heat of formation + Delta-G solvation = -83.624068 kcal Electronic energy + Delta-G solvation = -28914.041925 eV Core-core repulsion = 24803.961979 eV Total energy + Delta-G solvation = -4110.079946 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.84419 -40.87387 -39.75165 -39.05152 -36.75871 -35.28015 -34.19044 -33.96654 -32.44772 -31.43246 -30.19319 -28.92193 -28.29310 -27.29424 -25.30529 -23.83550 -23.52647 -22.28360 -21.44209 -21.28118 -19.13515 -18.91586 -18.60091 -18.14989 -17.68741 -17.22813 -16.74739 -16.70976 -16.45154 -16.39513 -15.81882 -15.64131 -15.31771 -15.02791 -14.95189 -14.81905 -14.37965 -14.22270 -14.03498 -13.90249 -13.75638 -13.23853 -13.16157 -12.94880 -12.83320 -12.78177 -12.34952 -12.33999 -12.31513 -12.08185 -11.96854 -11.79168 -11.71158 -11.08182 -10.90217 -10.68731 -10.61716 -10.56291 -10.15492 -9.32337 -8.87963 -7.83697 -5.19216 0.11247 0.31075 1.46735 1.48144 1.58221 1.64387 2.09290 2.25863 2.49997 2.84021 3.19155 3.30727 3.35361 3.48333 3.64643 3.65521 3.83804 3.90873 3.95709 3.99128 4.09894 4.28018 4.34667 4.36593 4.46378 4.48707 4.53818 4.59667 4.67307 4.71317 4.80989 4.84747 4.93681 4.97408 5.06121 5.09573 5.13235 5.33876 5.45581 5.51956 5.64283 5.76785 6.19770 6.23313 6.48028 6.84442 7.01613 7.10229 7.21360 7.77663 8.41996 9.27363 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019607 B = 0.002386 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.722483 B =11733.113978 C =12502.712558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.326 6.326 3 C 0.077 3.923 4 C -0.170 4.170 5 C -0.127 4.127 6 C 0.046 3.954 7 N -0.468 5.468 8 C 0.094 3.906 9 C -0.081 4.081 10 C 0.526 3.474 11 O -0.580 6.580 12 N -0.716 5.716 13 C 0.121 3.879 14 C 0.123 3.877 15 O -0.553 6.553 16 C -0.122 4.122 17 C 0.190 3.810 18 N -0.621 5.621 19 C -0.238 4.238 20 H 0.087 0.913 21 C -0.071 4.071 22 N -0.953 5.953 23 Si 0.980 3.020 24 H -0.262 1.262 25 H -0.294 1.294 26 H -0.294 1.294 27 C 0.114 3.886 28 H 0.116 0.884 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.166 0.834 32 H 0.173 0.827 33 H 0.181 0.819 34 H 0.131 0.869 35 H 0.131 0.869 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.384 0.616 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.008 0.992 43 H 0.009 0.991 44 H 0.246 0.754 45 H 0.057 0.943 46 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.753 23.095 12.269 29.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.029 3.971 4 C -0.196 4.196 5 C -0.146 4.146 6 C -0.111 4.111 7 N -0.178 5.178 8 C -0.045 4.045 9 C -0.121 4.121 10 C 0.313 3.687 11 O -0.460 6.460 12 N -0.369 5.369 13 C -0.003 4.003 14 C 0.081 3.919 15 O -0.360 6.360 16 C -0.161 4.161 17 C 0.065 3.935 18 N -0.347 5.347 19 C -0.367 4.367 20 H 0.105 0.895 21 C -0.263 4.263 22 N -0.603 5.603 23 Si 0.808 3.192 24 H -0.186 1.186 25 H -0.221 1.221 26 H -0.222 1.222 27 C -0.012 4.012 28 H 0.134 0.866 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.183 0.817 32 H 0.190 0.810 33 H 0.198 0.802 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.027 0.973 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -12.809 22.982 11.011 28.522 hybrid contribution -0.880 -1.220 0.640 1.635 sum -13.689 21.762 11.651 28.226 Atomic orbital electron populations 1.23386 0.76261 1.05735 1.02383 1.86073 1.23567 1.25933 1.88224 1.20031 0.93179 0.86228 0.97655 1.22068 1.02151 0.91690 1.03708 1.22379 0.95359 0.99438 0.97436 1.23130 0.92647 0.96467 0.98870 1.67414 1.41216 0.98317 1.10812 1.20118 0.88662 0.93709 1.02028 1.20463 1.02953 0.94973 0.93702 1.20759 0.76721 0.79607 0.91608 1.90680 1.52686 1.54771 1.47816 1.45794 1.55060 1.27258 1.08805 1.21686 0.99482 0.95283 0.83889 1.22377 0.83445 0.91621 0.94478 1.86606 1.28315 1.89766 1.31295 1.22799 1.02990 0.95852 0.94421 1.20822 0.95753 0.90280 0.86626 1.44653 1.67575 1.04801 1.17685 1.19511 1.31420 0.85032 1.00722 0.89520 1.25698 1.01046 1.01952 0.97647 1.70207 1.44636 1.30160 1.15265 0.84984 0.76835 0.79371 0.77978 1.18586 1.22087 1.22165 1.22341 0.95588 0.86073 0.97195 0.86622 0.90667 0.92097 0.81673 0.80985 0.80221 0.85133 0.85084 0.75016 0.90925 0.90965 0.76711 0.88874 0.90039 0.97402 0.97290 0.94518 0.92448 0.94879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 113.37 1.11 1.30 16 2 O -0.33 -6.45 9.55 -92.54 -0.88 -7.33 16 3 C 0.08 1.63 6.67 22.60 0.15 1.78 16 4 C -0.17 -2.63 9.14 22.56 0.21 -2.42 16 5 C -0.13 -1.71 10.11 22.34 0.23 -1.49 16 6 C 0.05 0.81 11.18 84.69 0.95 1.76 16 7 N -0.47 -11.24 10.27 -183.50 -1.88 -13.13 16 8 C 0.09 2.23 5.29 42.67 0.23 2.46 16 9 C -0.08 -1.64 5.77 29.10 0.17 -1.47 16 10 C 0.53 13.87 7.82 87.66 0.69 14.56 16 11 O -0.58 -20.44 16.03 -3.04 -0.05 -20.49 16 12 N -0.72 -16.56 5.17 -463.05 -2.39 -18.95 16 13 C 0.12 3.38 4.89 86.38 0.42 3.81 16 14 C 0.12 4.05 0.95 -9.40 -0.01 4.04 16 15 O -0.55 -18.31 13.19 -148.98 -1.96 -20.28 16 16 C -0.12 -4.63 6.16 31.78 0.20 -4.43 16 17 C 0.19 9.71 5.37 86.73 0.47 10.18 16 18 N -0.62 -31.80 3.40 -691.97 -2.35 -34.15 16 19 C -0.24 -13.28 10.28 84.03 0.86 -12.42 16 20 H 0.09 4.54 7.83 -2.91 -0.02 4.52 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 22 N -0.95 -58.65 10.31 21.65 0.22 -58.43 16 23 Si 0.98 46.03 29.55 68.60 2.03 48.06 16 24 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 C 0.11 4.33 5.93 86.85 0.51 4.85 16 28 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 0.52 7.70 -2.39 -0.02 0.50 16 30 H 0.06 0.61 7.70 -2.39 -0.02 0.59 16 31 H 0.17 1.50 6.45 -2.91 -0.02 1.48 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.13 2.14 7.52 -2.39 -0.02 2.12 16 35 H 0.13 2.09 8.14 -2.39 -0.02 2.08 16 36 H 0.41 7.31 7.30 -92.71 -0.68 6.63 16 37 H 0.07 2.13 8.11 -2.38 -0.02 2.11 16 38 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.38 9.09 8.16 -74.06 -0.60 8.48 16 40 H 0.09 3.13 8.01 -2.39 -0.02 3.11 16 41 H 0.08 2.94 8.14 -2.38 -0.02 2.92 16 42 H 0.01 0.45 7.38 -2.39 -0.02 0.44 16 43 H 0.01 0.51 7.51 -2.39 -0.02 0.49 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 45 H 0.06 1.97 7.97 -2.39 -0.02 1.95 16 46 H 0.03 1.25 8.03 -2.39 -0.02 1.24 16 Total: -1.00 -83.25 380.33 -0.89 -84.15 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -0.26 Total: 21.66 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.64 Total: 18.89 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -6.40 Total: -124.66 kcal Atomic # 8 Polarization: -45.20 SS G_CDS: -2.90 Total: -48.10 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -83.25 -0.89 -84.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754753890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.523 kcal (2) G-P(sol) polarization free energy of solvation -83.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds