Wall clock time and date at job start Tue Mar 31 2020 19:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35647 * 116.99931 * 2 1 4 4 C 1.39335 * 120.54132 * 0.24997 * 3 2 1 5 5 C 1.38308 * 118.43970 * 180.23990 * 4 3 2 6 6 C 1.38767 * 119.44546 * 359.51329 * 5 4 3 7 7 N 1.31379 * 121.06375 * 0.24618 * 6 5 4 8 8 C 1.32858 * 121.70011 * 0.02562 * 7 6 5 9 9 C 1.47830 * 119.78793 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00301 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99756 * 0.02562 * 9 8 7 12 12 C 1.46491 * 120.00067 * 174.69133 * 11 9 8 13 13 C 1.52996 * 109.54350 * 304.11059 * 12 11 9 14 14 N 1.46506 * 109.46950 * 305.57905 * 13 12 11 15 15 C 1.36943 * 119.99905 * 175.02519 * 14 13 12 16 16 H 1.08003 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99855 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99851 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47435 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47440 * 120.00110 * 19 17 15 22 22 H 1.48501 * 109.47151 * 240.00039 * 19 17 15 23 23 C 1.53180 * 109.54577 * 183.93108 * 12 11 9 24 24 C 1.53282 * 109.06062 * 297.02786 * 23 12 11 25 25 O 1.42898 * 109.46287 * 302.44664 * 24 23 12 26 26 C 1.42900 * 114.10237 * 61.15804 * 25 24 23 27 27 C 1.53088 * 109.41483 * 298.84553 * 26 25 24 28 28 H 1.08993 * 109.47170 * 300.00333 * 1 2 3 29 29 H 1.09007 * 109.47170 * 60.00157 * 1 2 3 30 30 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.78484 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.27687 * 179.78526 * 5 4 3 33 33 H 1.07997 * 119.46978 * 180.27733 * 6 5 4 34 34 H 0.96999 * 119.99871 * 354.68887 * 11 9 8 35 35 H 1.08994 * 109.47712 * 65.58137 * 13 12 11 36 36 H 1.09007 * 109.47333 * 185.58470 * 13 12 11 37 37 H 0.96994 * 119.99800 * 355.03112 * 14 13 12 38 38 H 0.97000 * 119.99943 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.51913 * 57.01902 * 23 12 11 40 40 H 1.08994 * 109.51951 * 177.21027 * 23 12 11 41 41 H 1.09000 * 109.45828 * 182.44626 * 24 23 12 42 42 H 1.09002 * 109.46803 * 62.44749 * 24 23 12 43 43 H 1.08997 * 109.48586 * 178.86169 * 26 25 24 44 44 H 1.09005 * 109.48756 * 58.82897 * 26 25 24 45 45 H 1.09005 * 109.52287 * 297.69747 * 27 26 25 46 46 H 1.08997 * 109.58019 * 177.54280 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 0.0052 5 6 1.9696 3.5928 -0.0001 6 6 3.3573 3.6012 -0.0001 7 7 4.0420 2.4799 0.0000 8 6 3.4411 1.2950 -0.0004 9 6 4.2532 0.0597 0.0003 10 8 3.7075 -1.0264 0.0005 11 7 5.5987 0.1379 0.0019 12 6 6.4031 -1.0808 0.1199 13 6 6.0006 -1.8390 1.3864 14 7 6.1021 -0.9458 2.5433 15 6 5.6932 -1.3751 3.7777 16 1 5.2963 -2.3723 3.8985 17 6 5.7889 -0.5287 4.8737 18 7 6.2721 0.6867 4.7263 19 14 5.2318 -1.1145 6.5576 20 1 4.7323 -2.5093 6.4563 21 1 6.3768 -1.0668 7.5022 22 1 4.1441 -0.2334 7.0534 23 6 7.8874 -0.7098 0.1946 24 6 8.2976 -0.0211 -1.1119 25 8 8.0255 -0.8895 -2.2136 26 6 6.6459 -1.2322 -2.3596 27 6 6.1693 -1.9697 -1.1055 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2175 2.3527 0.0098 32 1 1.4195 4.5222 0.0003 33 1 3.8829 4.5446 0.0003 34 1 6.0344 1.0010 -0.0753 35 1 4.9738 -2.1911 1.2883 36 1 6.6653 -2.6915 1.5262 37 1 6.4588 -0.0504 2.4348 38 1 6.3394 1.2780 5.4923 39 1 8.0519 -0.0330 1.0330 40 1 8.4820 -1.6129 0.3322 41 1 9.3632 0.2067 -1.0832 42 1 7.7314 0.9029 -1.2288 43 1 6.5215 -1.8769 -3.2296 44 1 6.0577 -0.3242 -2.4928 45 1 6.7293 -2.8982 -0.9941 46 1 5.1065 -2.1940 -1.1954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755099898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:28 Heat of formation + Delta-G solvation = -56.545998 kcal Electronic energy + Delta-G solvation = -30833.782036 eV Core-core repulsion = 26724.876283 eV Total energy + Delta-G solvation = -4108.905753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.91838 -40.01070 -38.18193 -37.88910 -35.57236 -33.55098 -32.61126 -31.30580 -30.94364 -30.59358 -30.24240 -27.49771 -26.45757 -24.67084 -23.63310 -23.25531 -22.84833 -21.43370 -20.99191 -18.83454 -18.36524 -17.61019 -17.13913 -16.99621 -15.97230 -15.88713 -15.78650 -15.28070 -15.22768 -14.68225 -14.46769 -14.36712 -14.13573 -13.93889 -13.61433 -13.54207 -13.17888 -12.97938 -12.64445 -12.55050 -12.26055 -12.20427 -11.70431 -11.56195 -11.52214 -11.41276 -11.06806 -10.83511 -10.78122 -10.40764 -10.22579 -9.97631 -9.90053 -9.84459 -9.61817 -9.39403 -9.14777 -8.72405 -8.49912 -8.30512 -6.76867 -5.66589 -2.92450 0.74520 1.21898 3.10682 3.13983 3.47567 3.49895 3.53928 3.56307 4.06397 4.07709 4.34815 4.53382 4.65009 4.67184 4.88800 4.96686 5.00720 5.05175 5.12825 5.15508 5.21402 5.26355 5.38072 5.40981 5.52091 5.57940 5.68448 5.81676 5.86058 5.88462 5.92186 6.05537 6.17902 6.21454 6.30727 6.37692 6.41827 6.58626 6.66955 6.98702 7.17792 7.19898 7.37138 7.76034 7.81392 8.10915 8.52550 8.76530 9.63969 10.22820 10.58780 11.56485 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007224 B = 0.005988 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.152591 B = 4675.145145 C = 6915.275662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.269 6.269 3 C 0.135 3.865 4 C -0.178 4.178 5 C -0.113 4.113 6 C 0.057 3.943 7 N -0.416 5.416 8 C 0.056 3.944 9 C 0.584 3.416 10 O -0.509 6.509 11 N -0.697 5.697 12 C 0.174 3.826 13 C 0.141 3.859 14 N -0.724 5.724 15 C -0.226 4.226 16 H 0.068 0.932 17 C -0.017 4.017 18 N -0.934 5.934 19 Si 0.903 3.097 20 H -0.281 1.281 21 H -0.293 1.293 22 H -0.294 1.294 23 C -0.154 4.154 24 C 0.060 3.940 25 O -0.386 6.386 26 C 0.066 3.934 27 C -0.163 4.163 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.403 0.597 35 H 0.050 0.950 36 H 0.020 0.980 37 H 0.382 0.618 38 H 0.251 0.749 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.077 0.923 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.411 5.253 -15.908 18.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.179 6.179 3 C 0.085 3.915 4 C -0.205 4.205 5 C -0.133 4.133 6 C -0.103 4.103 7 N -0.128 5.128 8 C -0.083 4.083 9 C 0.368 3.632 10 O -0.384 6.384 11 N -0.349 5.349 12 C 0.088 3.912 13 C 0.013 3.987 14 N -0.368 5.368 15 C -0.357 4.357 16 H 0.086 0.914 17 C -0.212 4.212 18 N -0.584 5.584 19 Si 0.735 3.265 20 H -0.207 1.207 21 H -0.220 1.220 22 H -0.222 1.222 23 C -0.192 4.192 24 C -0.016 4.016 25 O -0.305 6.305 26 C -0.010 4.010 27 C -0.202 4.202 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.239 0.761 35 H 0.068 0.932 36 H 0.038 0.962 37 H 0.216 0.784 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.106 0.894 44 H 0.065 0.935 45 H 0.096 0.904 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.735 4.021 -15.877 17.709 hybrid contribution -1.518 0.924 1.439 2.287 sum -8.254 4.945 -14.439 17.351 Atomic orbital electron populations 1.23187 0.78916 1.04537 1.00931 1.86444 1.20575 1.24481 1.86357 1.20054 0.92438 0.85697 0.93354 1.21701 1.00885 0.91941 1.05971 1.22146 0.95822 0.98241 0.97114 1.22664 0.91319 0.96437 0.99923 1.67616 1.39880 0.97408 1.07880 1.20843 0.88620 0.93107 1.05775 1.17351 0.82125 0.86953 0.76761 1.90746 1.71736 1.27275 1.48615 1.45696 1.05352 1.10013 1.73797 1.20589 0.89796 0.84939 0.95837 1.21086 0.99659 0.92630 0.85307 1.42223 1.76556 1.14761 1.03261 1.19272 1.33226 0.97884 0.85365 0.91372 1.24669 1.02555 0.96249 0.97770 1.69667 1.52385 1.06896 1.29438 0.86158 0.77766 0.77659 0.84939 1.20651 1.22009 1.22162 1.22461 0.94844 1.03259 0.98631 1.22641 1.01100 0.92082 0.85822 1.87876 1.25650 1.67743 1.49253 1.22499 0.82289 0.98665 0.97596 1.22557 1.04100 0.99098 0.94455 0.92577 0.92805 0.87745 0.83920 0.84239 0.81982 0.76113 0.93211 0.96197 0.78372 0.93874 0.89129 0.89549 0.88845 0.93342 0.89378 0.93481 0.90424 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.83 101.05 0.99 1.19 16 2 O -0.27 -4.32 8.56 -40.59 -0.35 -4.66 16 3 C 0.14 2.13 6.71 -38.55 -0.26 1.87 16 4 C -0.18 -2.09 9.13 -39.15 -0.36 -2.45 16 5 C -0.11 -1.18 10.10 -39.36 -0.40 -1.57 16 6 C 0.06 0.70 11.17 -17.55 -0.20 0.50 16 7 N -0.42 -6.60 9.54 -9.71 -0.09 -6.70 16 8 C 0.06 0.99 6.76 -82.88 -0.56 0.43 16 9 C 0.58 11.39 7.21 -12.33 -0.09 11.30 16 10 O -0.51 -10.99 11.44 -16.63 -0.19 -11.18 16 11 N -0.70 -12.36 3.74 -48.38 -0.18 -12.54 16 12 C 0.17 3.07 0.32 -131.64 -0.04 3.03 16 13 C 0.14 3.13 4.79 -4.04 -0.02 3.11 16 14 N -0.72 -18.96 5.21 -59.90 -0.31 -19.27 16 15 C -0.23 -6.62 9.99 -15.06 -0.15 -6.77 16 16 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 17 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 18 N -0.93 -28.81 13.06 55.49 0.72 -28.09 16 19 Si 0.90 23.37 29.55 -169.99 -5.02 18.34 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 23 C -0.15 -2.44 4.84 -26.49 -0.13 -2.56 16 24 C 0.06 0.81 6.67 37.30 0.25 1.06 16 25 O -0.39 -5.62 10.77 -35.23 -0.38 -6.00 16 26 C 0.07 0.91 6.68 37.20 0.25 1.16 16 27 C -0.16 -2.55 4.82 -26.59 -0.13 -2.67 16 28 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 29 H 0.05 0.42 7.71 -51.93 -0.40 0.02 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.14 1.21 6.46 -52.49 -0.34 0.87 16 32 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.40 6.72 6.74 -40.82 -0.28 6.45 16 35 H 0.05 1.22 6.25 -51.93 -0.32 0.89 16 36 H 0.02 0.45 8.14 -51.92 -0.42 0.02 16 37 H 0.38 10.36 6.51 -40.82 -0.27 10.09 16 38 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.09 1.58 7.22 -51.93 -0.37 1.21 16 40 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 41 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.62 7.01 -51.93 -0.36 0.26 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.66 7.75 -51.93 -0.40 0.26 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.09 1.60 6.26 -51.93 -0.32 1.28 16 LS Contribution 368.41 15.07 5.55 5.55 Total: -1.00 -35.84 368.41 -7.58 -43.42 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -6.40 Total: 14.11 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.93 Total: 7.02 kcal Atomic # 7 Polarization: -66.73 SS G_CDS: 0.14 Total: -66.60 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.92 Total: -21.84 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.84 -7.58 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755099898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.128 kcal (2) G-P(sol) polarization free energy of solvation -35.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds