Wall clock time and date at job start Tue Mar 31 2020 19:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35647 * 116.99931 * 2 1 4 4 C 1.39335 * 120.54132 * 0.24997 * 3 2 1 5 5 C 1.38308 * 118.43970 * 180.23990 * 4 3 2 6 6 C 1.38767 * 119.44546 * 359.51329 * 5 4 3 7 7 N 1.31379 * 121.06375 * 0.24618 * 6 5 4 8 8 C 1.32858 * 121.70011 * 0.02562 * 7 6 5 9 9 C 1.47830 * 119.78793 * 180.02562 * 8 7 6 10 10 O 1.21548 * 120.00301 * 179.97438 * 9 8 7 11 11 N 1.34780 * 119.99756 * 0.02562 * 9 8 7 12 12 C 1.46491 * 120.00067 * 174.69133 * 11 9 8 13 13 C 1.52996 * 109.54350 * 304.11059 * 12 11 9 14 14 N 1.46506 * 109.46950 * 305.57905 * 13 12 11 15 15 C 1.36943 * 119.99905 * 175.02519 * 14 13 12 16 16 H 1.08003 * 119.99936 * 0.02562 * 15 14 13 17 17 C 1.38811 * 119.99855 * 180.02562 * 15 14 13 18 18 N 1.31616 * 119.99851 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99868 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47435 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47440 * 120.00110 * 19 17 15 22 22 H 1.48501 * 109.47151 * 240.00039 * 19 17 15 23 23 C 1.53180 * 109.54577 * 183.93108 * 12 11 9 24 24 C 1.53282 * 109.06062 * 297.02786 * 23 12 11 25 25 O 1.42898 * 109.46287 * 302.44664 * 24 23 12 26 26 C 1.42900 * 114.10237 * 61.15804 * 25 24 23 27 27 C 1.53088 * 109.41483 * 298.84553 * 26 25 24 28 28 H 1.08993 * 109.47170 * 300.00333 * 1 2 3 29 29 H 1.09007 * 109.47170 * 60.00157 * 1 2 3 30 30 H 1.09004 * 109.46865 * 180.02562 * 1 2 3 31 31 H 1.08000 * 120.78484 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.27687 * 179.78526 * 5 4 3 33 33 H 1.07997 * 119.46978 * 180.27733 * 6 5 4 34 34 H 0.96999 * 119.99871 * 354.68887 * 11 9 8 35 35 H 1.08994 * 109.47712 * 65.58137 * 13 12 11 36 36 H 1.09007 * 109.47333 * 185.58470 * 13 12 11 37 37 H 0.96994 * 119.99800 * 355.03112 * 14 13 12 38 38 H 0.97000 * 119.99943 * 180.02562 * 18 17 15 39 39 H 1.08998 * 109.51913 * 57.01902 * 23 12 11 40 40 H 1.08994 * 109.51951 * 177.21027 * 23 12 11 41 41 H 1.09000 * 109.45828 * 182.44626 * 24 23 12 42 42 H 1.09002 * 109.46803 * 62.44749 * 24 23 12 43 43 H 1.08997 * 109.48586 * 178.86169 * 26 25 24 44 44 H 1.09005 * 109.48756 * 58.82897 * 26 25 24 45 45 H 1.09005 * 109.52287 * 297.69747 * 27 26 25 46 46 H 1.08997 * 109.58019 * 177.54280 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2970 2.3843 0.0052 5 6 1.9696 3.5928 -0.0001 6 6 3.3573 3.6012 -0.0001 7 7 4.0420 2.4799 0.0000 8 6 3.4411 1.2950 -0.0004 9 6 4.2532 0.0597 0.0003 10 8 3.7075 -1.0264 0.0005 11 7 5.5987 0.1379 0.0019 12 6 6.4031 -1.0808 0.1199 13 6 6.0006 -1.8390 1.3864 14 7 6.1021 -0.9458 2.5433 15 6 5.6932 -1.3751 3.7777 16 1 5.2963 -2.3723 3.8985 17 6 5.7889 -0.5287 4.8737 18 7 6.2721 0.6867 4.7263 19 14 5.2318 -1.1145 6.5576 20 1 4.7323 -2.5093 6.4563 21 1 6.3768 -1.0668 7.5022 22 1 4.1441 -0.2334 7.0534 23 6 7.8874 -0.7098 0.1946 24 6 8.2976 -0.0211 -1.1119 25 8 8.0255 -0.8895 -2.2136 26 6 6.6459 -1.2322 -2.3596 27 6 6.1693 -1.9697 -1.1055 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 0.2175 2.3527 0.0098 32 1 1.4195 4.5222 0.0003 33 1 3.8829 4.5446 0.0003 34 1 6.0344 1.0010 -0.0753 35 1 4.9738 -2.1911 1.2883 36 1 6.6653 -2.6915 1.5262 37 1 6.4588 -0.0504 2.4348 38 1 6.3394 1.2780 5.4923 39 1 8.0519 -0.0330 1.0330 40 1 8.4820 -1.6129 0.3322 41 1 9.3632 0.2067 -1.0832 42 1 7.7314 0.9029 -1.2288 43 1 6.5215 -1.8769 -3.2296 44 1 6.0577 -0.3242 -2.4928 45 1 6.7293 -2.8982 -0.9941 46 1 5.1065 -2.1940 -1.1954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755099898.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:27 Heat of formation + Delta-G solvation = -83.083971 kcal Electronic energy + Delta-G solvation = -30834.932808 eV Core-core repulsion = 26724.876283 eV Total energy + Delta-G solvation = -4110.056525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.08954 -41.23585 -39.30508 -39.08833 -37.17337 -35.44456 -33.79185 -32.80826 -32.26077 -32.00409 -31.57123 -28.36353 -28.18227 -25.92565 -25.32230 -24.60683 -23.83249 -23.08053 -22.24044 -20.26870 -19.47739 -19.26573 -18.71991 -18.05064 -17.16924 -17.00469 -16.94348 -16.83661 -16.38911 -16.25256 -15.98739 -15.51034 -15.34724 -15.28107 -15.08189 -14.85653 -14.56715 -14.46809 -14.15160 -13.78020 -13.58176 -13.42958 -13.23917 -13.04846 -12.83167 -12.79369 -12.45083 -12.40114 -12.31235 -12.10433 -11.97210 -11.66751 -11.40791 -11.09867 -10.92087 -10.79852 -10.61672 -10.40908 -9.88519 -9.45016 -8.95930 -7.95678 -5.22266 -0.30410 0.25267 1.41037 1.41921 1.52338 1.85052 2.16575 2.25803 2.52958 2.90093 2.94445 3.25884 3.37454 3.59298 3.62268 3.75414 3.80284 3.87566 4.00208 4.02306 4.22396 4.24401 4.27452 4.29742 4.33271 4.44009 4.50459 4.66060 4.68188 4.73962 4.78925 4.85919 4.86352 4.91458 5.00433 5.07123 5.10780 5.15019 5.21982 5.44287 5.44938 5.68191 6.22535 6.23750 6.26116 6.56992 6.87227 7.32946 7.36284 8.07483 8.35849 9.27312 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007224 B = 0.005988 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3875.152591 B = 4675.145145 C = 6915.275662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.308 6.308 3 C 0.118 3.882 4 C -0.174 4.174 5 C -0.091 4.091 6 C 0.048 3.952 7 N -0.440 5.440 8 C 0.004 3.996 9 C 0.574 3.426 10 O -0.545 6.545 11 N -0.691 5.691 12 C 0.178 3.822 13 C 0.144 3.856 14 N -0.727 5.727 15 C -0.241 4.241 16 H 0.062 0.938 17 C -0.071 4.071 18 N -0.962 5.962 19 Si 0.968 3.032 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.294 1.294 23 C -0.147 4.147 24 C 0.066 3.934 25 O -0.389 6.389 26 C 0.073 3.927 27 C -0.155 4.155 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.195 0.805 34 H 0.407 0.593 35 H 0.023 0.977 36 H 0.021 0.979 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.118 0.882 42 H 0.055 0.945 43 H 0.112 0.888 44 H 0.044 0.956 45 H 0.084 0.916 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.381 7.053 -16.632 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.219 6.219 3 C 0.067 3.933 4 C -0.200 4.200 5 C -0.111 4.111 6 C -0.114 4.114 7 N -0.152 5.152 8 C -0.132 4.132 9 C 0.360 3.640 10 O -0.422 6.422 11 N -0.342 5.342 12 C 0.091 3.909 13 C 0.017 3.983 14 N -0.370 5.370 15 C -0.373 4.373 16 H 0.080 0.920 17 C -0.263 4.263 18 N -0.613 5.613 19 Si 0.798 3.202 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.221 1.221 23 C -0.185 4.185 24 C -0.011 4.011 25 O -0.308 6.308 26 C -0.004 4.004 27 C -0.194 4.194 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.129 0.871 31 H 0.196 0.804 32 H 0.207 0.793 33 H 0.212 0.788 34 H 0.243 0.757 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.209 0.791 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.062 0.938 45 H 0.102 0.898 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.696 5.793 -16.627 19.216 hybrid contribution -1.324 0.435 1.653 2.162 sum -9.020 6.228 -14.974 18.557 Atomic orbital electron populations 1.23492 0.76387 1.05722 1.02785 1.86382 1.23420 1.25541 1.86560 1.20312 0.92241 0.86960 0.93781 1.22163 1.02530 0.90844 1.04497 1.22711 0.95209 0.99649 0.93497 1.23403 0.92831 0.96418 0.98728 1.67534 1.41025 0.97813 1.08843 1.20651 0.89612 0.92961 1.10005 1.17866 0.82549 0.87646 0.75957 1.90701 1.72372 1.28731 1.50372 1.45649 1.05144 1.10051 1.73399 1.20512 0.90903 0.85064 0.94384 1.21108 0.98101 0.92735 0.86395 1.42264 1.76230 1.14915 1.03579 1.19556 1.33080 0.97793 0.86870 0.91976 1.25440 1.03099 0.96499 1.01264 1.69810 1.53394 1.07801 1.30259 0.85146 0.77239 0.77439 0.80404 1.19802 1.21384 1.22078 1.22391 0.93368 1.03139 0.99618 1.22691 1.02663 0.91693 0.84011 1.87883 1.25744 1.67882 1.49242 1.22503 0.81975 0.98718 0.97162 1.22475 1.03213 0.99223 0.94536 0.91409 0.90029 0.87135 0.80371 0.79298 0.78812 0.75661 0.95904 0.96140 0.79087 0.94082 0.90998 0.89423 0.86366 0.92672 0.86975 0.93757 0.89758 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.83 113.37 1.11 1.32 16 2 O -0.31 -10.20 8.56 -68.63 -0.59 -10.78 16 3 C 0.12 3.73 6.71 22.93 0.15 3.89 16 4 C -0.17 -3.64 9.13 22.55 0.21 -3.43 16 5 C -0.09 -1.55 10.10 22.41 0.23 -1.33 16 6 C 0.05 1.08 11.17 84.89 0.95 2.03 16 7 N -0.44 -14.01 9.54 -184.62 -1.76 -15.78 16 8 C 0.00 0.16 6.76 41.93 0.28 0.45 16 9 C 0.57 23.74 7.21 86.78 0.63 24.37 16 10 O -0.54 -25.23 11.44 17.12 0.20 -25.03 16 11 N -0.69 -25.74 3.74 -425.24 -1.59 -27.33 16 12 C 0.18 6.50 0.32 3.73 0.00 6.50 16 13 C 0.14 6.72 4.79 86.38 0.41 7.14 16 14 N -0.73 -39.73 5.21 -343.44 -1.79 -41.52 16 15 C -0.24 -14.55 9.99 84.03 0.84 -13.71 16 16 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 17 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 18 N -0.96 -60.32 13.06 21.65 0.28 -60.04 16 19 Si 0.97 48.65 29.55 68.60 2.03 50.68 16 20 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 21 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 22 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 23 C -0.15 -4.72 4.84 30.75 0.15 -4.57 16 24 C 0.07 1.70 6.67 72.08 0.48 2.18 16 25 O -0.39 -10.69 10.77 -148.98 -1.60 -12.29 16 26 C 0.07 1.96 6.68 72.01 0.48 2.44 16 27 C -0.16 -4.98 4.82 30.69 0.15 -4.83 16 28 H 0.07 1.13 7.69 -2.39 -0.02 1.11 16 29 H 0.08 1.09 7.71 -2.38 -0.02 1.07 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.18 2.30 6.46 -2.91 -0.02 2.28 16 32 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.20 2.88 8.06 -2.91 -0.02 2.85 16 34 H 0.41 14.19 6.74 -92.71 -0.62 13.57 16 35 H 0.02 1.20 6.25 -2.39 -0.01 1.19 16 36 H 0.02 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.38 21.27 6.51 -92.71 -0.60 20.67 16 38 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 39 H 0.07 2.59 7.22 -2.39 -0.02 2.57 16 40 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 41 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.06 1.37 7.01 -2.39 -0.02 1.35 16 43 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.04 1.23 7.75 -2.38 -0.02 1.21 16 45 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 46 H 0.08 2.76 6.26 -2.39 -0.01 2.74 16 Total: -1.00 -81.71 368.41 1.51 -80.20 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -0.20 Total: 43.24 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 6.54 Total: 18.66 kcal Atomic # 7 Polarization: -139.81 SS G_CDS: -4.86 Total: -144.66 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -2.00 Total: -48.11 kcal Atomic # 14 Polarization: 48.65 SS G_CDS: 2.03 Total: 50.68 kcal Total: -81.71 1.51 -80.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755099898.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.887 kcal (2) G-P(sol) polarization free energy of solvation -81.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds