Wall clock time and date at job start Tue Mar 31 2020 18:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00063 * 2 1 4 4 O 1.21276 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.50693 * 119.99990 * 0.02562 * 3 2 1 6 6 C 1.50706 * 109.47138 * 179.97438 * 5 3 2 7 7 C 1.34512 * 125.78276 * 90.00146 * 6 5 3 8 8 C 1.41384 * 106.83801 * 180.02562 * 7 6 5 9 9 C 1.34515 * 106.84115 * 359.97438 * 8 7 6 10 10 O 1.34301 * 125.79287 * 269.69231 * 6 5 3 11 11 C 1.46498 * 119.99593 * 180.02562 * 2 1 3 12 12 C 1.53777 * 113.62007 * 16.48612 * 11 2 1 13 13 C 1.53782 * 87.08060 * 89.11376 * 12 11 2 14 14 N 1.46900 * 113.61177 * 139.98202 * 13 12 11 15 15 C 1.46907 * 110.99776 * 107.50307 * 14 13 12 16 16 C 1.50698 * 109.46804 * 179.97438 * 15 14 13 17 17 O 1.21298 * 120.00215 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00015 * 180.02562 * 16 15 14 19 19 C 1.37096 * 120.00570 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99840 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00278 * 180.02562 * 19 18 16 22 22 N 1.31419 * 119.99827 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00046 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.46666 * 90.00872 * 23 21 19 25 25 H 1.48502 * 109.47211 * 210.00163 * 23 21 19 26 26 H 1.48497 * 109.47249 * 330.00790 * 23 21 19 27 27 C 1.53778 * 113.61440 * 113.98681 * 11 2 1 28 28 H 1.08997 * 109.47294 * 264.65704 * 1 2 3 29 29 H 1.09003 * 109.47206 * 24.65594 * 1 2 3 30 30 H 1.08996 * 109.47294 * 144.65567 * 1 2 3 31 31 H 1.08993 * 109.47390 * 300.00070 * 5 3 2 32 32 H 1.09006 * 109.47140 * 60.00120 * 5 3 2 33 33 H 1.08002 * 126.58701 * 359.96316 * 7 6 5 34 34 H 1.08000 * 126.58009 * 179.97438 * 8 7 6 35 35 H 1.08001 * 125.79234 * 179.97438 * 9 8 7 36 36 H 1.09000 * 112.90692 * 245.23078 * 11 2 1 37 37 H 1.09000 * 113.61501 * 203.66687 * 12 11 2 38 38 H 1.09007 * 113.60983 * 334.56637 * 12 11 2 39 39 H 1.08995 * 113.61559 * 270.88681 * 13 12 11 40 40 H 1.00903 * 111.00059 * 343.55677 * 14 13 12 41 41 H 1.08996 * 109.46915 * 299.99811 * 15 14 13 42 42 H 1.09000 * 109.46712 * 60.00439 * 15 14 13 43 43 H 0.97002 * 120.00143 * 359.97438 * 18 16 15 44 44 H 0.97001 * 119.99696 * 179.97438 * 22 21 19 45 45 H 1.08998 * 113.61826 * 25.42780 * 27 11 2 46 46 H 1.09005 * 113.61884 * 156.33150 * 27 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3648 3.6177 0.0011 7 6 2.8759 4.2160 -1.0898 8 6 3.7453 5.2319 -0.6304 9 6 3.7131 5.1939 0.7138 10 8 2.8708 4.2181 1.0907 11 6 2.1974 -1.2688 -0.0006 12 6 1.3354 -2.4776 -0.4009 13 6 1.7379 -2.1832 -1.8557 14 7 2.0147 -3.3906 -2.6454 15 6 0.9410 -3.6424 -3.6159 16 6 1.2596 -4.8855 -4.4060 17 8 2.2804 -5.5013 -4.1823 18 7 0.4103 -5.3130 -5.3612 19 6 0.6998 -6.4441 -6.0797 20 1 1.6087 -6.9925 -5.8806 21 6 -0.1756 -6.8845 -7.0648 22 7 0.1023 -7.9685 -7.7539 23 14 -1.7472 -5.9357 -7.4098 24 1 -1.4868 -4.9081 -8.4498 25 1 -2.7952 -6.8717 -7.8903 26 1 -2.2090 -5.2729 -6.1637 27 6 3.0014 -1.5153 -1.2880 28 1 -0.3634 -0.0957 1.0232 29 1 -0.3634 0.9340 -0.4287 30 1 -0.3634 -0.8382 -0.5945 31 1 0.7585 2.5302 -0.8891 32 1 0.7591 2.5298 0.8909 33 1 2.6637 3.9675 -2.1193 34 1 4.3243 5.9085 -1.2414 35 1 4.2675 5.8409 1.3775 36 1 2.7738 -1.4263 0.9110 37 1 1.7154 -3.4281 -0.0265 38 1 0.2719 -2.3393 -0.2056 39 1 1.0673 -1.4893 -2.3624 40 1 2.1554 -4.1902 -2.0462 41 1 -0.0020 -3.7795 -3.0869 42 1 0.8575 -2.7930 -4.2938 43 1 -0.4062 -4.8207 -5.5399 44 1 -0.5090 -8.2761 -8.4413 45 1 3.2831 -0.6002 -1.8089 46 1 3.8370 -2.2028 -1.1561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755863076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:20 Heat of formation + Delta-G solvation = -37.831653 kcal Electronic energy + Delta-G solvation = -28023.857990 eV Core-core repulsion = 23915.763753 eV Total energy + Delta-G solvation = -4108.094238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.48388 -41.60309 -40.29549 -39.32720 -36.32598 -35.86247 -34.43158 -33.95853 -33.70138 -32.74667 -28.88728 -28.35662 -27.91909 -26.36647 -25.74483 -24.00798 -22.69134 -22.18568 -21.34298 -21.01963 -20.29354 -19.48703 -18.36946 -18.13689 -17.76568 -17.41014 -17.04287 -16.79815 -16.59228 -16.47390 -16.02824 -15.76137 -15.37337 -15.08066 -14.75219 -14.46449 -14.24681 -14.12197 -14.00642 -13.77777 -13.74150 -13.64220 -13.52498 -13.47234 -13.08818 -12.79447 -12.76121 -12.62417 -12.51221 -12.40054 -11.96585 -11.67689 -11.50946 -11.46695 -10.92625 -10.80674 -10.42570 -10.24319 -9.63321 -9.38314 -9.23674 -8.40525 -6.01900 0.75355 1.30732 1.37485 1.46248 1.58271 1.65095 1.95549 1.96547 2.21525 2.24455 2.75002 3.15738 3.34323 3.39388 3.57616 3.64883 3.82720 3.98722 4.04009 4.13424 4.15367 4.18726 4.28689 4.36273 4.45107 4.47671 4.54115 4.57942 4.63921 4.79007 4.88500 4.91909 4.94173 5.00325 5.02604 5.09598 5.17263 5.22108 5.53124 5.60622 5.62374 5.93074 6.13334 6.19792 6.35525 6.41301 6.60726 6.88854 7.14920 7.40457 7.97696 8.77211 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020481 B = 0.001915 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.807227 B =14617.621802 C =14980.126450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.595 5.595 3 C 0.508 3.492 4 O -0.577 6.577 5 C -0.052 4.052 6 C -0.015 4.015 7 C -0.215 4.215 8 C -0.231 4.231 9 C -0.044 4.044 10 O -0.193 6.193 11 C 0.128 3.872 12 C -0.156 4.156 13 C 0.075 3.925 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.446 3.554 17 O -0.617 6.617 18 N -0.590 5.590 19 C -0.330 4.330 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.258 1.258 25 H -0.276 1.276 26 H -0.226 1.226 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.138 0.862 33 H 0.154 0.846 34 H 0.164 0.836 35 H 0.234 0.766 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.348 0.652 41 H 0.085 0.915 42 H 0.111 0.889 43 H 0.391 0.609 44 H 0.279 0.721 45 H 0.051 0.949 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 28.827 19.731 35.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.329 5.329 3 C 0.297 3.703 4 O -0.457 6.457 5 C -0.091 4.091 6 C -0.065 4.065 7 C -0.234 4.234 8 C -0.250 4.250 9 C -0.111 4.111 10 O -0.089 6.089 11 C 0.023 3.977 12 C -0.195 4.195 13 C -0.035 4.035 14 N -0.313 5.313 15 C -0.068 4.068 16 C 0.234 3.766 17 O -0.502 6.502 18 N -0.231 5.231 19 C -0.460 4.460 20 H 0.071 0.929 21 C -0.216 4.216 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.183 1.183 25 H -0.201 1.201 26 H -0.150 1.150 27 C -0.174 4.174 28 H 0.095 0.905 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.172 0.828 34 H 0.182 0.818 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.168 0.832 41 H 0.103 0.897 42 H 0.129 0.871 43 H 0.226 0.774 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.371 28.475 19.554 35.125 hybrid contribution -0.558 -0.535 -0.382 0.862 sum -6.929 27.940 19.172 34.586 Atomic orbital electron populations 1.22332 0.76600 1.05618 1.04036 1.47656 1.08422 1.04003 1.72781 1.20961 0.87659 0.85978 0.75685 1.90744 1.16255 1.87866 1.50787 1.20287 0.95057 0.84677 1.09070 1.22009 1.01739 0.98430 0.84371 1.21875 1.01828 0.99751 0.99975 1.22168 1.04348 1.02971 0.95514 1.24716 0.96236 0.93293 0.96837 1.83967 1.48762 1.40619 1.35589 1.21615 0.94572 0.83912 0.97569 1.24023 1.02019 0.97284 0.96187 1.23148 0.96910 0.91918 0.91496 1.59947 1.43866 1.07076 1.20383 1.21675 0.94568 0.94952 0.95605 1.21101 0.84266 0.88432 0.82826 1.90553 1.28868 1.60565 1.70208 1.42015 1.22008 1.25083 1.34031 1.19004 1.07721 1.03251 1.15987 0.92943 1.26177 1.02925 0.97381 0.95115 1.69819 1.39503 1.24582 1.23698 0.85329 0.76655 0.78662 0.80624 1.18298 1.20073 1.14951 1.23327 0.97953 0.99806 0.96322 0.90471 0.87966 0.89345 0.82656 0.84385 0.82807 0.81843 0.74935 0.90711 0.88336 0.87454 0.87039 0.83182 0.89698 0.87091 0.77360 0.91163 0.92967 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.24 9.74 127.77 1.24 1.48 16 2 N -0.60 -8.32 3.01 -819.68 -2.47 -10.79 16 3 C 0.51 9.61 7.38 87.65 0.65 10.25 16 4 O -0.58 -17.34 15.22 -3.02 -0.05 -17.39 16 5 C -0.05 -0.58 4.71 29.10 0.14 -0.44 16 6 C -0.02 -0.29 5.81 24.83 0.14 -0.14 16 7 C -0.22 -4.06 10.81 22.19 0.24 -3.82 16 8 C -0.23 -3.95 10.91 22.19 0.24 -3.70 16 9 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 10 O -0.19 -3.92 10.65 -2.46 -0.03 -3.94 16 11 C 0.13 2.29 4.09 45.52 0.19 2.48 16 12 C -0.16 -2.23 6.82 31.12 0.21 -2.02 16 13 C 0.08 1.49 3.96 45.44 0.18 1.67 16 14 N -0.68 -19.42 6.24 -492.85 -3.08 -22.50 16 15 C 0.06 1.84 6.01 85.55 0.51 2.35 16 16 C 0.45 19.83 7.82 87.66 0.69 20.51 16 17 O -0.62 -34.41 15.78 -3.09 -0.05 -34.46 16 18 N -0.59 -27.32 5.09 -306.98 -1.56 -28.88 16 19 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 22 N -0.94 -56.36 13.96 21.66 0.30 -56.05 16 23 Si 0.97 37.91 27.74 68.60 1.90 39.81 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.28 -10.74 7.11 99.48 0.71 -10.03 16 26 H -0.23 -7.22 6.52 99.48 0.65 -6.58 16 27 C -0.13 -3.19 7.23 31.12 0.22 -2.96 16 28 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.10 -0.07 6.25 -2.39 -0.01 -0.08 16 30 H 0.09 0.29 5.63 -2.39 -0.01 0.27 16 31 H 0.16 0.64 7.42 -2.39 -0.02 0.63 16 32 H 0.14 0.76 8.11 -2.38 -0.02 0.74 16 33 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.23 1.69 8.06 -2.91 -0.02 1.67 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.10 1.50 7.82 -2.39 -0.02 1.48 16 38 H 0.11 0.95 5.81 -2.38 -0.01 0.93 16 39 H 0.11 1.84 7.76 -2.39 -0.02 1.82 16 40 H 0.35 10.51 7.90 -89.69 -0.71 9.80 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.11 2.70 8.13 -2.39 -0.02 2.68 16 43 H 0.39 14.67 5.76 -92.71 -0.53 14.13 16 44 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 45 H 0.05 1.45 7.41 -2.39 -0.02 1.43 16 46 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 Total: -1.00 -90.75 381.90 1.49 -89.26 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: -0.27 Total: 38.15 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.79 Total: 6.81 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -6.80 Total: -118.22 kcal Atomic # 8 Polarization: -55.67 SS G_CDS: -0.12 Total: -55.79 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.90 Total: 39.81 kcal Total: -90.75 1.49 -89.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755863076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.426 kcal (2) G-P(sol) polarization free energy of solvation -90.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds