Wall clock time and date at job start Tue Mar 31 2020 18:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34778 * 120.00054 * 2 1 4 4 O 1.21287 * 119.99740 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.99987 * 0.02562 * 3 2 1 6 6 C 1.52999 * 109.47441 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.47251 * 180.02562 * 6 5 3 8 8 C 1.34778 * 119.99797 * 180.02562 * 7 6 5 9 9 O 1.21695 * 120.00180 * 359.97438 * 8 7 6 10 10 C 1.46661 * 119.99801 * 179.97438 * 8 7 6 11 11 C 1.36547 * 125.98702 * 179.97438 * 10 8 7 12 12 C 1.40360 * 106.70833 * 180.02562 * 11 10 8 13 13 C 1.35131 * 107.11647 * 359.97438 * 12 11 10 14 14 O 1.33934 * 108.76477 * 0.02562 * 13 12 11 15 15 C 1.46503 * 120.00032 * 180.02562 * 2 1 3 16 16 C 1.53773 * 113.61620 * 37.49661 * 15 2 1 17 17 C 1.53778 * 87.08309 * 220.01884 * 16 15 2 18 18 N 1.46502 * 113.61957 * 270.88472 * 17 16 15 19 19 C 1.36941 * 120.00048 * 252.50084 * 18 17 16 20 20 H 1.07999 * 119.99712 * 359.97438 * 19 18 17 21 21 C 1.38808 * 119.99723 * 179.97438 * 19 18 17 22 22 N 1.31611 * 120.00127 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99565 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46914 * 60.00413 * 23 21 19 25 25 H 1.48496 * 109.46858 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47668 * 300.00135 * 23 21 19 27 27 C 1.53776 * 87.08113 * 25.43317 * 17 16 15 28 28 H 1.09009 * 109.47058 * 90.00122 * 1 2 3 29 29 H 1.09001 * 109.46959 * 209.99531 * 1 2 3 30 30 H 1.08998 * 109.47505 * 330.00066 * 1 2 3 31 31 H 1.09007 * 109.47452 * 59.99486 * 5 3 2 32 32 H 1.09000 * 109.46924 * 299.99574 * 5 3 2 33 33 H 1.09007 * 109.46939 * 59.99513 * 6 5 3 34 34 H 1.09000 * 109.46993 * 299.99873 * 6 5 3 35 35 H 0.96998 * 120.00272 * 359.97438 * 7 6 5 36 36 H 1.08005 * 126.64485 * 359.97438 * 11 10 8 37 37 H 1.08003 * 126.44277 * 180.02562 * 12 11 10 38 38 H 1.07997 * 125.61851 * 180.26772 * 13 12 11 39 39 H 1.09005 * 112.85273 * 168.80842 * 15 2 1 40 40 H 1.09005 * 113.61633 * 334.56969 * 16 15 2 41 41 H 1.09004 * 113.61409 * 105.47213 * 16 15 2 42 42 H 1.09004 * 113.61583 * 139.97761 * 17 16 15 43 43 H 0.97001 * 119.99838 * 72.48699 * 18 17 16 44 44 H 0.97011 * 119.99857 * 179.97438 * 22 21 19 45 45 H 1.09004 * 113.61721 * 220.01899 * 27 17 16 46 46 H 1.08999 * 113.61889 * 89.11402 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3796 3.6352 0.0011 7 7 1.6471 4.9039 0.0023 8 6 2.3210 6.0711 0.0024 9 8 3.5379 6.0711 0.0020 10 6 1.5876 7.3412 0.0030 11 6 2.1433 8.5885 0.0037 12 6 1.0795 9.5041 0.0047 13 6 -0.0644 8.7848 0.0040 14 8 0.2459 7.4819 0.0032 15 6 2.1975 -1.2687 -0.0006 16 6 1.5374 -2.3608 -0.8587 17 6 1.9130 -3.3526 0.2548 18 7 3.2398 -3.9504 0.0856 19 6 3.3570 -5.2615 -0.2918 20 1 2.4713 -5.8550 -0.4642 21 6 4.6141 -5.8276 -0.4526 22 7 5.6934 -5.1044 -0.2420 23 14 4.7740 -7.6164 -0.9667 24 1 4.1207 -7.8126 -2.2858 25 1 6.2112 -7.9759 -1.0672 26 1 4.1171 -8.4828 0.0448 27 6 1.8954 -2.1551 1.2193 28 1 -0.3634 0.0000 -1.0278 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 0.7590 2.5298 0.8908 32 1 0.7585 2.5302 -0.8892 33 1 3.0063 3.5778 -0.8889 34 1 3.0062 3.5771 0.8911 35 1 0.6771 4.9039 0.0022 36 1 3.1972 8.8247 0.0042 37 1 1.1600 10.5812 0.0050 38 1 -1.0642 9.1932 0.0004 39 1 3.2625 -1.1426 -0.1955 40 1 0.4624 -2.2291 -0.9819 41 1 2.0528 -2.5467 -1.8010 42 1 1.1382 -4.0910 0.4615 43 1 4.0352 -3.4173 0.2406 44 1 6.5719 -5.5002 -0.3541 45 1 2.6998 -2.1747 1.9547 46 1 0.9183 -1.9670 1.6643 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755865275.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:44 Heat of formation + Delta-G solvation = -13.780414 kcal Electronic energy + Delta-G solvation = -27550.040374 eV Core-core repulsion = 23442.989076 eV Total energy + Delta-G solvation = -4107.051298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.12907 -40.32234 -39.67355 -38.15240 -35.58007 -34.86947 -33.54685 -33.02472 -31.61393 -30.12685 -29.61035 -27.11469 -25.59768 -25.10391 -24.10062 -23.09001 -22.31560 -22.06764 -20.84294 -19.61226 -18.75558 -18.27118 -17.58417 -17.11577 -16.85381 -16.74592 -16.24706 -16.09054 -15.70629 -15.13005 -14.86894 -14.48979 -14.05757 -13.93264 -13.82942 -13.48338 -13.46813 -13.14196 -13.05457 -12.95410 -12.73056 -12.53229 -12.08303 -12.04272 -11.91262 -11.71838 -11.51096 -10.85682 -10.76853 -10.71901 -10.53996 -10.26547 -10.19459 -9.88588 -9.68751 -9.57008 -9.54776 -9.12695 -8.90920 -8.45248 -7.01467 -5.78729 -3.09405 0.61850 1.89371 2.18862 2.62227 2.67241 2.80627 3.18089 3.43378 3.47551 3.49294 4.17648 4.39035 4.43139 4.52574 4.56046 4.59777 4.70749 4.93858 5.10170 5.12095 5.15596 5.15978 5.30061 5.36763 5.39775 5.41409 5.47615 5.57970 5.59528 5.70782 5.83898 5.85759 5.92290 5.98689 6.06005 6.20276 6.33177 6.39360 6.54447 6.69555 6.76939 7.00132 7.03403 7.48689 7.68321 7.68958 8.20827 8.39077 9.49757 10.06189 10.40152 11.43140 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031759 B = 0.001663 C = 0.001599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.429059 B =16832.168216 C =17502.909473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.602 5.602 3 C 0.513 3.487 4 O -0.533 6.533 5 C -0.152 4.152 6 C 0.132 3.868 7 N -0.721 5.721 8 C 0.602 3.398 9 O -0.512 6.512 10 C -0.079 4.079 11 C -0.120 4.120 12 C -0.225 4.225 13 C -0.007 4.007 14 O -0.166 6.166 15 C 0.124 3.876 16 C -0.182 4.182 17 C 0.172 3.828 18 N -0.705 5.705 19 C -0.248 4.248 20 H 0.072 0.928 21 C -0.010 4.010 22 N -0.929 5.929 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.168 4.168 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.404 0.596 36 H 0.161 0.839 37 H 0.157 0.843 38 H 0.211 0.789 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.387 0.613 44 H 0.257 0.743 45 H 0.071 0.929 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.873 27.682 1.274 33.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.335 5.335 3 C 0.299 3.701 4 O -0.409 6.409 5 C -0.192 4.192 6 C 0.009 3.991 7 N -0.372 5.372 8 C 0.387 3.613 9 O -0.389 6.389 10 C -0.131 4.131 11 C -0.140 4.140 12 C -0.244 4.244 13 C -0.077 4.077 14 O -0.061 6.061 15 C 0.022 3.978 16 C -0.224 4.224 17 C 0.059 3.941 18 N -0.343 5.343 19 C -0.379 4.379 20 H 0.090 0.910 21 C -0.207 4.207 22 N -0.576 5.576 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.209 4.209 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.179 0.821 37 H 0.175 0.825 38 H 0.228 0.772 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.221 0.779 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.490 27.165 1.229 32.332 hybrid contribution -0.277 -0.445 -0.295 0.602 sum -17.768 26.720 0.934 32.101 Atomic orbital electron populations 1.21758 0.80093 1.03096 1.01815 1.47968 1.06708 1.06241 1.72533 1.20253 0.88023 0.85056 0.76722 1.90775 1.13738 1.87221 1.49185 1.21842 0.99580 0.92919 1.04907 1.21163 0.93626 0.79557 1.04762 1.45869 1.10640 1.05712 1.74988 1.16508 0.86327 0.81249 0.77171 1.90940 1.11892 1.86158 1.49913 1.22106 0.80553 0.96228 1.14207 1.22033 1.01420 0.90464 1.00095 1.21900 0.91817 1.01392 1.09266 1.24436 1.00823 0.79795 1.02662 1.84049 1.23411 1.28039 1.70595 1.22783 0.97810 0.79475 0.97739 1.24308 0.99320 0.97726 1.01040 1.20899 0.89926 0.91280 0.91982 1.42204 1.00966 1.10489 1.80689 1.19219 0.92335 0.87294 1.39084 0.90989 1.24787 0.95398 0.98304 1.02166 1.69661 0.97144 1.35773 1.55039 0.86241 0.76653 0.84679 0.78408 1.21199 1.21653 1.21191 1.23962 1.01403 0.97800 0.97691 0.92530 0.90434 0.91423 0.88226 0.88236 0.89880 0.89886 0.76113 0.82104 0.82498 0.77250 0.86350 0.91022 0.90943 0.91426 0.77904 0.93274 0.91070 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 8.84 59.84 0.53 1.16 16 2 N -0.60 -7.77 3.08 -173.00 -0.53 -8.30 16 3 C 0.51 6.97 7.67 -10.99 -0.08 6.89 16 4 O -0.53 -9.86 15.46 5.55 0.09 -9.77 16 5 C -0.15 -1.27 4.37 -27.89 -0.12 -1.39 16 6 C 0.13 1.38 4.96 -4.05 -0.02 1.36 16 7 N -0.72 -6.20 5.55 -61.63 -0.34 -6.54 16 8 C 0.60 6.69 7.79 -12.86 -0.10 6.59 16 9 O -0.51 -7.68 16.86 5.19 0.09 -7.59 16 10 C -0.08 -0.72 7.13 -36.79 -0.26 -0.99 16 11 C -0.12 -0.99 10.62 -39.39 -0.42 -1.41 16 12 C -0.22 -1.27 10.87 -39.89 -0.43 -1.71 16 13 C -0.01 -0.03 12.08 29.63 0.36 0.32 16 14 O -0.17 -1.18 10.40 5.00 0.05 -1.13 16 15 C 0.12 2.05 4.08 -67.12 -0.27 1.78 16 16 C -0.18 -3.02 7.31 -25.92 -0.19 -3.21 16 17 C 0.17 3.32 4.56 -67.12 -0.31 3.02 16 18 N -0.71 -17.63 5.31 -52.64 -0.28 -17.91 16 19 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.29 5.50 -17.44 -0.10 -0.38 16 22 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 23 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C -0.17 -2.75 7.36 -25.92 -0.19 -2.94 16 28 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 29 H 0.08 0.63 6.34 -51.93 -0.33 0.30 16 30 H 0.07 0.37 6.44 -51.93 -0.33 0.03 16 31 H 0.10 0.58 7.40 -51.93 -0.38 0.20 16 32 H 0.10 0.60 8.11 -51.93 -0.42 0.18 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.61 16 34 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 35 H 0.40 2.26 8.23 -40.82 -0.34 1.93 16 36 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.16 0.51 8.06 -52.48 -0.42 0.09 16 38 H 0.21 0.10 8.06 -52.49 -0.42 -0.33 16 39 H 0.12 2.40 7.23 -51.93 -0.38 2.03 16 40 H 0.07 0.97 6.72 -51.93 -0.35 0.62 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 43 H 0.39 10.46 7.90 -40.82 -0.32 10.13 16 44 H 0.26 7.61 8.31 -40.81 -0.34 7.28 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.08 1.03 6.92 -51.93 -0.36 0.67 16 LS Contribution 388.05 15.07 5.85 5.85 Total: -1.00 -36.29 388.05 -7.70 -43.99 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -6.56 Total: 9.61 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -1.76 Total: 2.09 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: -0.43 Total: -60.34 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: 0.23 Total: -18.49 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.29 -7.70 -43.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755865275.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.208 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds