Wall clock time and date at job start Tue Mar 31 2020 18:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34225 * 117.00444 * 2 1 4 4 O 1.20827 * 119.99288 * 0.02562 * 3 2 1 5 5 C 1.50688 * 120.00321 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47279 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47121 * 180.02562 * 6 5 3 8 8 C 1.52997 * 109.47428 * 59.99889 * 7 6 5 9 9 C 1.50704 * 109.46971 * 59.99860 * 8 7 6 10 10 O 1.21297 * 119.99886 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00092 * 179.97438 * 9 8 7 12 12 C 1.40151 * 120.00099 * 180.02562 * 11 9 8 13 13 C 1.40416 * 125.97476 * 0.02562 * 12 11 9 14 14 C 1.35237 * 107.86796 * 179.97438 * 13 12 11 15 15 N 1.34970 * 107.85941 * 0.26441 * 14 13 12 16 16 C 1.46504 * 125.96940 * 179.73198 * 15 14 13 17 17 C 1.50699 * 109.46610 * 125.00265 * 16 15 14 18 18 H 1.08001 * 120.00250 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00163 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99479 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00617 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46688 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47180 * 119.99918 * 21 19 17 24 24 H 1.48504 * 109.47157 * 240.00277 * 21 19 17 25 25 N 1.31213 * 125.97528 * 180.02562 * 12 11 9 26 26 C 1.53004 * 109.47060 * 300.00148 * 8 7 6 27 27 C 1.53003 * 109.47226 * 60.00038 * 26 8 7 28 28 H 1.08996 * 109.46662 * 300.00036 * 1 2 3 29 29 H 1.08997 * 109.47178 * 59.99896 * 1 2 3 30 30 H 1.08998 * 109.47233 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47643 * 300.00171 * 5 3 2 32 32 H 1.08997 * 109.46953 * 60.00265 * 6 5 3 33 33 H 1.08993 * 109.47118 * 299.99989 * 6 5 3 34 34 H 1.09007 * 109.46834 * 299.99737 * 7 6 5 35 35 H 1.08999 * 109.46917 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.47294 * 179.97438 * 8 7 6 37 37 H 0.96994 * 119.99525 * 0.02562 * 11 9 8 38 38 H 1.08000 * 126.06023 * 359.97438 * 13 12 11 39 39 H 1.08002 * 126.06518 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.46990 * 244.99353 * 16 15 14 41 41 H 1.08992 * 109.47218 * 5.00271 * 16 15 14 42 42 H 0.97001 * 119.99807 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.46953 * 179.97438 * 26 8 7 44 44 H 1.08993 * 109.47118 * 299.99944 * 26 8 7 45 45 H 1.08999 * 109.47022 * 179.97438 * 27 26 8 46 46 H 1.09001 * 109.47297 * 59.99646 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0002 2.7420 0.0002 7 6 5.5282 2.8220 -0.0011 8 6 6.0742 2.1293 -1.2512 9 6 5.5343 2.8135 -2.4808 10 8 4.7868 3.7620 -2.3681 11 7 5.8830 2.3719 -3.7055 12 6 5.3813 3.0085 -4.8489 13 6 4.5123 4.1113 -4.8648 14 6 4.2649 4.4261 -6.1565 15 7 4.9442 3.5552 -6.9322 16 6 4.9527 3.5330 -8.3971 17 6 6.3744 3.6034 -8.8921 18 1 7.1899 3.6594 -8.1862 19 6 6.6340 3.5962 -10.2462 20 7 5.6410 3.5274 -11.1058 21 14 8.3961 3.6841 -10.8599 22 1 9.3211 3.7545 -9.7003 23 1 8.7011 2.4737 -11.6643 24 1 8.5669 4.8947 -11.7029 25 7 5.6417 2.6782 -6.0918 26 6 5.6403 0.6621 -1.2520 27 6 4.1124 0.5821 -1.2509 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9565 0.7804 0.8891 32 1 3.6109 3.2355 0.8907 33 1 3.6102 3.2366 -0.8893 34 1 5.9186 2.3271 0.8883 35 1 5.8372 3.8672 0.0000 36 1 7.1626 2.1867 -1.2523 37 1 6.4810 1.6137 -3.7955 38 1 4.1124 4.6180 -3.9989 39 1 3.6320 5.2288 -6.5053 40 1 4.4907 2.6108 -8.7492 41 1 4.3931 4.3878 -8.7767 42 1 5.8236 3.5220 -12.0584 43 1 6.0289 0.1688 -2.1429 44 1 6.0307 0.1673 -0.3628 45 1 3.8033 -0.4632 -1.2519 46 1 3.7219 1.0769 -2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000180235607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:51 Heat of formation + Delta-G solvation = -54.087013 kcal Electronic energy + Delta-G solvation = -29047.695155 eV Core-core repulsion = 24938.896032 eV Total energy + Delta-G solvation = -4108.799123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26886 -40.60552 -39.80782 -37.44326 -36.51617 -34.81443 -33.39728 -32.10192 -31.15251 -30.63927 -29.29374 -28.05130 -26.74832 -24.89152 -23.25963 -22.95915 -22.32659 -20.97994 -20.53269 -19.84411 -19.05256 -17.76273 -17.07163 -16.83743 -16.61951 -16.52679 -16.33279 -15.94546 -15.28448 -14.69575 -14.42523 -14.39431 -14.21611 -13.95974 -13.74163 -13.41506 -12.99998 -12.86764 -12.75434 -12.51271 -12.34948 -12.29644 -12.23286 -12.13835 -11.77066 -11.47201 -11.23605 -11.04858 -11.01568 -10.91116 -10.85659 -10.48150 -10.38749 -10.31183 -10.26923 -9.95198 -9.48103 -9.35543 -8.64673 -8.12092 -7.46119 -6.25306 -4.30279 2.01117 2.33602 2.48631 2.80293 2.93932 3.21430 3.28941 3.35497 3.72695 3.86838 4.24842 4.30354 4.30828 4.40454 4.62294 4.73251 4.83293 4.84681 4.92893 4.93785 5.04767 5.09902 5.11410 5.20555 5.26358 5.42716 5.50531 5.58585 5.66745 5.69254 5.82099 5.85048 5.93378 5.98340 6.17065 6.24997 6.41786 6.50490 6.65279 6.86550 7.04767 7.43109 7.55227 7.58101 7.70744 7.88509 8.04447 8.28912 8.63994 8.79949 9.35415 10.83507 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002436 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.280179 B =11490.224007 C =12106.118181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.501 6.501 5 C -0.076 4.076 6 C -0.121 4.121 7 C -0.095 4.095 8 C -0.108 4.108 9 C 0.522 3.478 10 O -0.510 6.510 11 N -0.631 5.631 12 C 0.256 3.744 13 C -0.287 4.287 14 C 0.050 3.950 15 N -0.319 5.319 16 C 0.258 3.742 17 C -0.527 4.527 18 H 0.069 0.931 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.908 3.092 22 H -0.271 1.271 23 H -0.281 1.281 24 H -0.282 1.282 25 N -0.305 5.305 26 C -0.110 4.110 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.409 0.591 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.267 0.733 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.081 0.919 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.530 -7.735 24.650 26.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.387 6.387 5 C -0.095 4.095 6 C -0.158 4.158 7 C -0.132 4.132 8 C -0.129 4.129 9 C 0.308 3.692 10 O -0.384 6.384 11 N -0.278 5.278 12 C 0.003 3.997 13 C -0.318 4.318 14 C -0.100 4.100 15 N -0.101 5.101 16 C 0.140 3.860 17 C -0.566 4.566 18 H 0.087 0.913 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.735 3.265 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 N -0.136 5.136 26 C -0.147 4.147 27 C -0.155 4.155 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.244 0.756 38 H 0.177 0.823 39 H 0.184 0.816 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.727 -7.555 23.642 25.098 hybrid contribution 0.501 0.236 -0.157 0.575 sum -3.226 -7.319 23.485 24.810 Atomic orbital electron populations 1.23262 0.76470 1.03620 1.02605 1.86501 1.23355 1.33722 1.84198 1.23903 0.92186 0.81261 0.72183 1.90685 1.67122 1.36348 1.44549 1.21146 0.86586 1.00264 1.01479 1.21756 0.95596 0.92725 1.05717 1.21328 0.95240 1.01414 0.95249 1.21420 1.02099 0.96162 0.93231 1.20607 0.81039 0.83998 0.83583 1.90595 1.34712 1.27325 1.85743 1.42553 1.48472 1.33800 1.02991 1.19139 0.98340 0.95543 0.86681 1.21528 1.09782 1.03326 0.97197 1.22566 0.99286 0.97017 0.91092 1.49076 1.32164 1.20878 1.07986 1.19745 0.99530 0.99257 0.67424 1.21293 0.91523 1.51681 0.92056 0.91261 1.24955 0.98205 0.94637 0.96348 1.69932 1.31181 1.49777 1.02482 0.86273 0.83729 0.77739 0.78767 1.19569 1.20683 1.20759 1.77318 1.20681 1.17726 0.97882 1.21566 0.95337 0.94105 1.03729 1.21593 0.95812 1.01401 0.96678 0.91995 0.91806 0.88138 0.87552 0.91224 0.87682 0.90981 0.90323 0.87730 0.75555 0.82298 0.81569 0.93739 0.92565 0.92377 0.90475 0.89931 0.90022 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.66 10.47 -39.24 -0.41 -4.07 16 3 C 0.46 5.33 7.25 36.00 0.26 5.59 16 4 O -0.50 -7.37 15.73 -18.75 -0.29 -7.66 16 5 C -0.08 -0.68 2.63 -91.77 -0.24 -0.92 16 6 C -0.12 -1.24 4.20 -26.73 -0.11 -1.35 16 7 C -0.09 -0.76 5.09 -26.73 -0.14 -0.90 16 8 C -0.11 -0.88 3.01 -91.77 -0.28 -1.16 16 9 C 0.52 6.84 5.61 -10.98 -0.06 6.77 16 10 O -0.51 -8.30 10.79 5.54 0.06 -8.24 16 11 N -0.63 -9.22 5.34 -11.13 -0.06 -9.28 16 12 C 0.26 5.05 8.11 -154.40 -1.25 3.80 16 13 C -0.29 -5.69 9.61 -39.83 -0.38 -6.08 16 14 C 0.05 1.02 11.44 -17.24 -0.20 0.82 16 15 N -0.32 -7.44 3.67 -62.56 -0.23 -7.67 16 16 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 17 C -0.53 -14.66 9.23 -34.44 -0.32 -14.98 16 18 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.90 -25.35 13.29 55.43 0.74 -24.61 16 21 Si 0.91 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 N -0.30 -6.96 12.42 31.44 0.39 -6.57 16 26 C -0.11 -0.72 5.36 -26.73 -0.14 -0.86 16 27 C -0.12 -1.01 4.91 -26.73 -0.13 -1.14 16 28 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 29 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.10 1.47 5.47 -51.93 -0.28 1.19 16 34 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 35 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 4.83 8.24 -40.82 -0.34 4.50 16 38 H 0.16 3.08 5.91 -52.49 -0.31 2.77 16 39 H 0.17 2.77 8.06 -52.49 -0.42 2.35 16 40 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.08 0.46 7.56 -51.93 -0.39 0.07 16 44 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 46 H 0.07 0.84 7.22 -51.93 -0.37 0.46 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -34.50 377.37 -7.92 -42.43 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.73 Total: 4.65 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.05 Total: -0.95 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.84 Total: -48.13 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.65 Total: -19.98 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.50 -7.92 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180235607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.661 kcal (2) G-P(sol) polarization free energy of solvation -34.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds